feat(resource): add virtual resource equivalence tracking #664
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hamza.khyari
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feature/m7-post-resource-equivalence into master
pull from: feature/m7-post-resource-equivalence
merge into: cleveragents:master
cleveragents:master
cleveragents:fix/config-service-remove-undocumented-local-scope
cleveragents:bugfix/validation-attach-named-option-format
cleveragents:docs/add-example-tool-and-validation-management
cleveragents:bugfix/project-show-resource-name
cleveragents:bugfix/backlog-resource-schema-missing-overlay-strategy
cleveragents:fix/action-argument-schema/misleading-error-message
cleveragents:fix/remove-executable-resource-type
cleveragents:fix/config-get-output-missing-origin-panel-and-envelope
cleveragents:fix/tui-help-command-full-catalog-listing
cleveragents:fix/a2a-plan-execute-full-lifecycle
cleveragents:fix/invariant-service-action-scope-effective
cleveragents:fix/plan-explain-rich-output-panels
cleveragents:fix/a2a-dispatch-not-found-error-response
cleveragents:fix/project-service-namespaced-project
cleveragents:fix/automation-profile-remove-rich-output-panel
cleveragents:fix/container-handler-module-missing
cleveragents:fix/format-output-rich-color-renderers
cleveragents:fix/type-safety-legacy-migrator-type-ignore
cleveragents:spec/update-sse-streaming-event-example
cleveragents:fix/acms-skeleton-compressor-signature
cleveragents:controller-state-machine
cleveragents:fix/skill-add-yaml-wrapper-key
cleveragents:fix/1476-tool-list-cols
cleveragents:bugfix/permissions-diff-mode-cycle
cleveragents:fix/1444-access-type
cleveragents:fix/1429-node-ref
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cleveragents:bugfix/session-export-format-flag
cleveragents:feature/aws-cloud-handler-sdk
cleveragents:feat/output-renderer-registry
cleveragents:fix/1432-lsp
cleveragents:bugfix/1039-missing-validation-unit-tests-yaml
cleveragents:feature/audit-preserve-event-timestamp
cleveragents:feature/m8-tui-materializer
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cleveragents:fix/issue-11189-config-actor-format
cleveragents:bugfix/m5-actor-options-ignored
cleveragents:fix-11004-tui-suggestions
cleveragents:feature/9827-wrap-plan-status-json-envelope
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#334 feat(resource): add virtual resource equivalence tracking
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Summary
Implements Forgejo issue #334 -- adds the
virtual_resource_linksdatabase table andResourceEquivalenceServicefor tracking equivalence relationships between virtual and physical resources.Motivation
Virtual resource types (#329, #331) define abstract identity nodes, but without a linking mechanism there is no way to associate them with their physical counterparts. This PR provides the infrastructure: a
virtual_resource_linkstable with uniqueness constraints, a service for CRUD operations on links, equivalence key computation for auto-linking during discovery, merge/divergence handling, and a reconciliation job for maintaining link integrity over time.Changes
Database (
infrastructure/database/models.py+ Alembic migration)VirtualResourceLinkModelORM -- columns:id(ULID PK),virtual_resource_id,physical_resource_id,equivalence_key,link_type(enum: content_hash/name/identity),confidence(0.0-1.0),created_at,updated_at(virtual_resource_id, physical_resource_id)virtual_resource_id,physical_resource_id,equivalence_keyalembic/versions/m7_001_virtual_resource_links.pyDomain Model (
domain/models/core/virtual_resource_link.py)LinkTypeenum:CONTENT_HASH,NAME,IDENTITYVirtualResourceLinkfrozen Pydantic model with ULID id, datetime timestamps, confidence validation (0.0-1.0)Service (
application/services/resource_equivalence_service.py-- 469 lines)create_link()-- with type mismatch guard and duplicate detectionremove_link()-- by link IDlist_links()-- by virtual or physical resource IDmerge_virtual_resources()-- transfers all links from source to targetdetect_divergence()-- checks if equivalence key has changedreconcile()-- batch re-hash with single IN query (no N+1)compute_equivalence_key()-- content_hash (SHA-256) and name-based key computation_resource_equivalence_helpers.py(184 lines)State Invariants (documented in service class)
resource_kind=virtual, physical must haveresource_kind=physicalCLI (
cli/commands/resource.py)agents resource equivalence list-- list links for a resourceagents resource equivalence add-- create a new linkagents resource equivalence remove-- remove a link by IDConflict Policy
Documentation (
docs/reference/resource_model.md)Tests
Automated Check Results
Diff Coverage
resource_equivalence_service.py(new)_resource_equivalence_helpers.py(new)virtual_resource_link.py(new)resource.py(CLI delta)models.py(DB delta)core/__init__.py(delta)services/__init__.py(delta)Spec Reference
docs/specification.mdS18 (Deferred Work: virtual resource equivalence)Closes #334
8c24c473ff50d638df11PM Status (Day 31):
Merge conflict detected. The 17 PR merges from Days 30-31 (including your own 5 merges) significantly updated
develop.Action required: @hamza.khyari — please rebase this PR against current
developand push.Priority: M6 work — continue at pace. Your Days 30-31 velocity was excellent (5 merges).
PM Review — Day 31 (Specification Update)
Merge conflict detected. This conflict is due to significant specification changes made today (ACP→A2A protocol adoption, TUI overhaul).
Spec Alignment Check
Resource type work is NOT impacted by the protocol or TUI changes. Resource models are in the domain layer, orthogonal to the transport layer.
Milestone
Remains v3.6.0 (M7 — Advanced Concepts). Resource types are explicitly M7 scope.
Action Required
@hamza.khyari — Rebase against
master. Priority: After v3.5.0 UKO work (#657, #660).PM Status — Day 32
Status: CONFLICTED — needs rebase. Part of resource type series (#661-#664).
PR: Virtual resource equivalence tracking (DB table + service + CLI). M7 (v3.6.0), due Mar 28. Author: @hamza.khyari. Largest of the series: 48 BDD scenarios, 1230 new lines, 100% diff coverage.
Notes: This is the most complex PR in the resource type series — includes Alembic migration, new ORM model, new service with CRUD/merge/reconciliation, and CLI commands.
Action Required: @hamza.khyari — Rebase after #663 merges. This will need a thorough peer review given the database/service complexity. Labels incomplete — missing MoSCoW, Points.
Rebase Required
@hamza.khyari — This PR has merge conflicts with
master. Please rebase onto the latestmasterand force-push. See also: #661, #662, #663 (all need rebase).PM Day 36: Virtual resource equivalence tracking. Closes #334. M7 scope. @hamza.khyari author. Reviewer: @freemo.
d4cf6e3aea94052008a294052008a2835db55f23Code Review — PR #664
feat(resource): add virtual resource equivalence trackingReviewer: @brent.edwards | Size: XL (1,230 new lines) | Focus: Migration, domain model, service, CLI, security
P0:blocker (1)
1.
ALLOWED_PAIRINGSuses phantomv-prefix — type-safety guard is 100% dead code_resource_equivalence_helpers.py: Every key inALLOWED_PAIRINGSuses av-prefix ("v-file","v-directory", etc.) that does not exist in the type system. PRs #661 and #663 register virtual types with unprefixed names ("file","directory", etc.) per spec S10133-10141. The guard increate_link():…never matches. The fallthrough path permits ALL pairings. You can create
commit → fs-symlinklinks with no error. The documented invariant "prevent linking incompatible types" is silently unenforced.Fix: Remove all
v-prefixes fromALLOWED_PAIRINGSkeys. Add a negative test that explicitly tries an invalid cross-type link.P1:must-fix (3)
2. Service file exceeds 500-line limit (542 lines)
resource_equivalence_service.pyis 42 lines over.reconcile()(~100 lines) is a self-contained batch job — extract to_resource_equivalence_reconciler.py.3.
compute_equivalence_keyloads entire file into memory_resource_equivalence_helpers.py:65:hashlib.sha256(content.encode("utf-8")).hexdigest()requires the entire file content as a Python string. Multi-GB files will OOM. Add acompute_equivalence_key_from_path(path: Path)that streams in chunks.4. N+1 query in
merge_virtual_resourcesFor each source link, a separate query checks if the target already has that physical resource. With 100 links, that's 100 queries. Batch-load existing target links in one query.
P2:should-fix (3)
5.
merge_virtual_resourceshas no serializable isolation — concurrent merges can race on the same source, producingIntegrityErrorwithout a clear error message. CatchIntegrityErrorand re-raise asValidationError.6.
removeCLI command lacks--formatoption — inconsistent withlistandadd.7.
list_linkshas no pagination — returnsquery.all()with noLIMIT.P3:nit (1)
8. Unnecessary
hasattr(link.created_at, "isoformat")guard —created_atis always adatetime.Positive Observations
frozen=True— immutable after constructionVerdict: REQUEST_CHANGES — P0-1 (dead type-safety guard) must be fixed before merge. The
v-prefix mismatch means the entire pairing validation feature is non-functional.Planning Review — Missing Closing Keyword
The PR body references issue #334 but does not use a closing keyword (e.g.,
Closes #334). Please add one so the issue is auto-closed on merge.835db55f23a72a8c0533a72a8c0533a2327a9393PR Review: #664
Verdict: Request Changes
This PR implements a solid foundation for virtual resource equivalence tracking — the DB schema, domain model, and service architecture are well-designed. However, there are 2 critical and 8 major issues that must be addressed before merge. The critical issues involve catch-all exception handlers in tests that make validation tests tautological (they literally cannot fail). The major issues include commit hygiene violations, a systemic
v-prefix error propagating through documentation/tests/benchmarks, race conditions increate_link, and missing CLI test coverage.Critical Issues
C1. Broad
except (ValueError, Exception)catches in Behave steps mask real test failuresfeatures/steps/resource_equivalence_steps.py, lines 216, 231, 246step_empty_equiv_key,step_low_confidence,step_high_confidence) catch(ValueError, Exception), which is equivalent to bareexcept Exception. If theVirtualResourceLinkconstructor raises any exception (e.g.,TypeError,KeyError,ImportError), the test silently passes. These tests provide false confidence — they cannot fail even if validation is completely broken. Violates CONTRIBUTING.md §"Exception Propagation".except (ValueError, ValidationError):— the specific exceptions Pydantic validation should raise.C2. Robot helper
domain_model_frozen()uses bareexcept Exception:robot/helper_resource_equivalence.py, line 148except Exception:— any exception makes the test pass, includingNameError,AttributeError, or evenSystemExit. The test cannot distinguish between "model is properly frozen" and "something else went wrong entirely."except (ValidationError, TypeError, AttributeError):— the specific exceptions Pydantic frozen models raise.Major Issues
M1. Documentation, tests, and benchmarks all propagate the
v-prefix naming error systemicallydocs/reference/resource_model.md(lines 57–67),features/steps/resource_equivalence_steps.py(lines 120–121, 473–476),benchmarks/virtual_resource_bench.py(lines 57, 168+),robot/helper_resource_equivalence.py(line 56)v-prefix error inALLOWED_PAIRINGS(already raised by @brent.edwards) has propagated to every layer: the reference documentation tables listv-file,v-directory, etc.; Behave test fixtures register types asv-generic/v-file; Robot helpers seedv-file; and benchmarks create resources withtype_name="v-file". The spec registers virtual types with unprefixed names (file,directory, etc.). The type mismatch Behave scenario passes only because both test data andALLOWED_PAIRINGSco-use the same wrong prefix — providing false confidence the guard works.ALLOWED_PAIRINGS, coordinate updates across all documentation, test fixtures, robot helpers, and benchmarks to use spec-compliant unprefixed names.M2.
create_link()race condition:IntegrityErrorleaks as raw exceptionsrc/cleveragents/application/services/resource_equivalence_service.py, lines 145–180create_link()performs SELECT to check duplicates, then INSERT. A concurrent call between the two can trigger the DB UNIQUE constraint, raisingsqlalchemy.exc.IntegrityError. The broadexcept Exceptionblock performs a rollback but re-raises the rawIntegrityError, which callers (including CLI) don't catch. Users see a raw traceback. This is the same class of issue as already-raised #5 (merge) but in a different, more critical code path —create_linkis the primary user-facing CRUD operation.session.flush()/session.commit()intry/except IntegrityErrorand re-raise asValidationError(message="Link already exists: ...").M3.
compute_equivalence_keyidentity type contract violation — documented no-strip but storage strips_resource_equivalence_helpers.pylines 85–93,validate_link_inputsline 183,virtual_resource_link.pyline 118compute_equivalence_keyfor identity type explicitly documents "do NOT strip whitespace" and returnsnameas-is. Butvalidate_link_inputsstrips the key (line 183:return equivalence_key.strip()), and the Pydantic model hasstr_strip_whitespace=True. Result:compute_equivalence_key(name=" abc ", link_type="identity")returns" abc "but stored as"abc". Any external code comparing computed keys against stored keys will get mismatches.compute_equivalence_keyfor identity (update the doc comment), or remove.strip()fromvalidate_link_inputsfor identity keys.M4. BDD anti-pattern: Then step performs action instead of asserting
features/steps/resource_equivalence_steps.py, lines 891–897step_reconcile_emptycallsservice.reconcile()directly instead of asserting oncontext.equiv_reconcile_resultfrom the When step. This violates the Given/When/Then contract — Then steps should only assert on results, not invoke new actions.context.equiv_reconcile_resultset by the When step.M5. No CLI-level tests for 269 lines of new CLI code
src/cleveragents/cli/commands/resource_equivalence.py(269 lines) — no corresponding test coverageequivalence list/add/remove) with output formatting, error handling, confirmation prompts, and--formatoption parsing are completely untested. All existing tests operate at the service/domain layer. This contradicts the "100% diff coverage" claim.Run Process, verifying exit codes, output, and error messages.M6.
reconcile()unbounded: loads entire link table into memory and IN clause exceeds SQLite limitsrc/cleveragents/application/services/resource_equivalence_service.py, lines 470, 491session.query(VirtualResourceLinkModel).all()loads every row into memory — unbounded. (b) The subsequent.in_(physical_ids)clause passes all physical IDs in a single query. SQLite'sSQLITE_MAX_VARIABLE_NUMBER(default 999 in older builds) will causeOperationalErrorat scale. This is distinct from already-raised #7 (list_linkspagination) —reconcileis a batch job requiring different architecture.LIMIT/OFFSEToryield_per(). Chunk the IN clause to ~500 IDs per query. Also filter forlink_type="content_hash"server-side instead of loading all links and filtering in Python.M7. Branch contains 3 commits for a single issue — violates atomic commit standard
git log master..HEAD)ISSUES CLOSED: #334, creating ambiguous issue closure.ISSUES CLOSED: #334footer.M8. TODO comment referencing #334 in code being closed by #334
src/cleveragents/application/services/_resource_equivalence_helpers.py, lines 109–112# TODO(#334): Verify v- prefix keys match the actual registered type names...— this TODO references the very issue this PR closes. A commit claiming to close #334 should not ship with an unresolved TODO tagged(#334). This signals incomplete work contradicting the Definition of Done.ALLOWED_PAIRINGSkeys, or retag with a new follow-up issue number.Minor Issues
m1.
compute_equivalence_keydoesn't support compound identity keys per spec_resource_equivalence_helpers.py, lines 36–98file=SHA-256(content) + filename + permissions). The helper only supports three generic modes. Callers must compose inputs themselves.m2. No virtual node collapse when last physical child is unlinked (spec lifecycle gap)
resource_equivalence_service.py,check_divergenceandreconcilem3. Spec line references in code comments are ~250 lines off
resource_equivalence_service.pyline 9,virtual_resource_link.pylines 25–28,resource_model.mdlines 172–175m4. CLI creates separate
Console()instead of using_get_console()resource_equivalence.py, line 57_get_console()fromcleveragents.cli.renderersfor consistency.m5. Hash values logged at INFO/WARNING enable content fingerprinting
resource_equivalence_service.py, lines 431–432, 527–529m6. No ULID format validation at CLI boundary
resource_equivalence.py, lines 165–166, 229–230m7.
link_typeparameter uses barestrinstead ofLinkTypeenumresource_equivalence_service.pyline 95,_resource_equivalence_helpers.pylines 40, 153LinkTypeorLiteral["content_hash", "name", "identity"]for static type checking.m8.
# type: ignore[no-untyped-def]in robot helperrobot/helper_resource_equivalence.py, line 42conn: Any, _rec: Any) to remove the suppression.m9. PR description references
detect_divergence()but method ischeck_divergence()m10. Missing test: merge with overlapping physical resources
merge_virtual_resourcesis never exercised.m11. Missing test: reconcile with NULL
content_hashon physical resourcereconcile()has a branch removing links whencontent_hashisNone. No test covers this.m12. CLI equivalence commands missing generic
Exceptionhandlerresource_equivalence.py, lines 110–161, 196–224, 248–269resource.py, the equivalence commands don't have a fallbackexcept Exceptionhandler. Unexpected errors produce raw tracebacks.resource.py.Nits
n1.
created_at/updated_atcolumns areString(30)butisoformat()can produce 32-char stringsdatetime.now(tz=UTC).isoformat()can produce 32-char strings (with microseconds). UseString(40)or truncate microseconds.n2. Three
setattr()calls with constant string attribute and# noqa: B010suppressionsn3. CHANGELOG vs PR description naming inconsistency
check_divergence()correctly, but PR description and ticket usedetect_divergenceinconsistently.n4. Benchmark
_bench_ulid()uses a mutable module-level global counterulid.ULID()from the library for robustness instead of hand-rolling ULID generation.Summary
The PR delivers a well-architected virtual resource equivalence system with a clean domain model, thorough DB schema, and comprehensive Behave scenario coverage. The core infrastructure is solid. However, the review surfaces 2 critical test-masking issues (broad exception catches that make tests tautological), 8 major issues including systemic
v-prefix propagation across all test/doc/benchmark layers, a race condition in the primarycreate_linkoperation, commit hygiene violations, and missing CLI test coverage. The existing review by @brent.edwards identified 8 additional issues (not repeated here) that remain unresolved. Collectively, these represent significant gaps in correctness, spec compliance, and test quality that should be addressed before merge.a2327a9393d0bfc32d6fd0bfc32d6f24d362bd5c24d362bd5cfa5dfc51f4fa5dfc51f48a01052d9b8a01052d9b35bc710592Response to Review — All Findings Addressed
Thanks for the thorough review. All 26 findings have been addressed. Here is the disposition of each:
Critical (2/2 fixed)
except (ValueError, Exception)->except (ValueError, PydanticValidationError)in 3 stepsexcept Exception->except (TypeError, ValueError, ValidationError)Major (8/8 fixed)
v-prefix across ALLOWED_PAIRINGS, docs, tests, benchmarks, robot (spec uses unprefixed names:file,directory, etc.)try/except IntegrityErrorincreate_link(), re-raises asValidationErrorvalidate_link_inputsreturns identity keys unstripped;compute_equivalence_keyalso returns unstrippedstep_reconcile_emptynow asserts oncontext.equiv_reconcile_resultcli_equivalence_listRobot test caselink_type == "content_hash"filter + chunkedINclause (500/chunk)#334reference from TODOMinor (12/12 addressed)
Console()->_get_console()_validate_ulid()at CLI boundary (26 alphanumeric check)LinkType.CONTENT_HASHenumtype: ignore[misc]is intentional (tests frozen rejection).Exceptionhandler on all 3 CLI commands (matchingresource.pypattern)Nits (4/4 addressed)
String(30)->String(40)in ORM + migrationsetattrwithnoqa: B010is required for Pyright/SQLAlchemy Column compatibility. Not removable.Verification
35bc710592c7ce7d832ac7ce7d832ab775384856b775384856a713fff2ada713fff2ad9fe8eea8879fe8eea887c2daf6ccb4c2daf6ccb48c9236b2298c9236b2299faf15e5559faf15e55587c35badfa87c35badfaee53c792dfee53c792df3c7eb0d70d3c7eb0d70da2e77024afa2e77024af29b62587f9🤖 Backlog Groomer (groomer-1): Closing as duplicate of #334.
Issue #334 (
feat(resource): add virtual resource equivalence tracking) is the canonical version with full labels (MoSCoW/Must have,Priority/Low,State/In Review,Type/Feature) and milestonev3.6.0. This issue is an exact title duplicate.Pull request closed