feat(resource): add virtual resource equivalence tracking #334

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Commit Message: feat(resource): add virtual resource equivalence tracking
Branch: feature/m7-post-resource-equivalence

Background

virtual_resource_links table maps virtual resource ULIDs to physical resource ULIDs with uniqueness constraints. ResourceEquivalenceService creates, merges virtual resources, and updates links on content divergence. Equivalence key computation (hash or name) supports auto-linking during discovery.

Acceptance Criteria

Add virtual_resource_links table mapping virtual resource ULID to physical resource ULIDs with uniqueness constraints.
Add ResourceEquivalenceService to create/merge virtual resources and update links on content divergence.
Add helper to compute equivalence key (hash or name) for auto-linking during resource discovery.
Add agents resource equivalence list/add/remove CLI to manage equivalence sets (post-M6).
Add conflict policy for equivalence (prefer physical over virtual; log divergence events).

Definition of Done

This issue is complete when:

All subtasks below are completed and checked off.
A Git commit is created where the first line of the commit message matches
the Commit Message in Metadata exactly, followed by a blank line, then
additional lines providing relevant details about the implementation. The
commit body should be appropriate in size for a commit message and relatively
complete in describing what was done.
The commit is pushed to the remote on the branch matching the Branch in
Metadata exactly.
The commit is submitted as a pull request to master, reviewed, and
merged before this issue is marked done.

Subtasks

Add virtual_resource_links table mapping virtual resource ULID to physical resource ULIDs with uniqueness constraints.
Add ResourceEquivalenceService to create/merge virtual resources and update links on content divergence.
Add helper to compute equivalence key (hash or name) for auto-linking during resource discovery.
Add agents resource equivalence list/add/remove CLI to manage equivalence sets (post-M6).
Add conflict policy for equivalence (prefer physical over virtual; log divergence events).
Add equivalence reconciliation job to re-hash linked resources on schedule.
Add guard to prevent linking resources of incompatible types (type mismatch error).
Update docs/reference/resource_model.md with physical/virtual equivalence rules and examples.
Add CLI examples for equivalence list/add/remove.
Tests (Behave): Add scenarios for linking/unlinking physical resources to virtual resources and divergence updates.
Tests (Robot): Add Robot test that creates two identical physical resources and verifies a shared virtual resource.
Tests (ASV): Add benchmarks/virtual_resource_bench.py for equivalence update overhead.
Verify coverage >=97% via nox -s coverage_report. If coverage is <97% then review the current unit test coverage report at build/coverage.xml and use it to write new Behave based unit tests to improve code coverage. Specifically, write Behave style unit tests that are descriptively named and specifically improves coverage on whichever file has the most uncovered lines by writing tests that will target the uncovered lines in the report. Once that is done rerun nox -s coverage_report to verify all tests pass and coverage is above >=97%. Only mark this as complete once coverage is >=97%, if not repeat this task as many times as is needed until coverage reaches >=97%.
Run nox (all default sessions, including benchmark), fix any errors if needed ensuring nox passes across entire code base, do not ignore any failure even if it seems unrelated to this commit, fix it.

Section: ### Section 18: Deferred Work
Status: Open

## Metadata - **Commit Message**: `feat(resource): add virtual resource equivalence tracking` - **Branch**: `feature/m7-post-resource-equivalence` ## Background `virtual_resource_links` table maps virtual resource ULIDs to physical resource ULIDs with uniqueness constraints. `ResourceEquivalenceService` creates, merges virtual resources, and updates links on content divergence. Equivalence key computation (hash or name) supports auto-linking during discovery. ## Acceptance Criteria - [x] Add `virtual_resource_links` table mapping virtual resource ULID to physical resource ULIDs with uniqueness constraints. - [x] Add `ResourceEquivalenceService` to create/merge virtual resources and update links on content divergence. - [x] Add helper to compute equivalence key (hash or name) for auto-linking during resource discovery. - [x] Add `agents resource equivalence list/add/remove` CLI to manage equivalence sets (post-M6). - [x] Add conflict policy for equivalence (prefer physical over virtual; log divergence events). ## Definition of Done This issue is complete when: - All subtasks below are completed and checked off. - A Git commit is created where the **first line** of the commit message matches the Commit Message in Metadata exactly, followed by a blank line, then additional lines providing relevant details about the implementation. The commit body should be appropriate in size for a commit message and relatively complete in describing what was done. - The commit is pushed to the remote on the branch matching the **Branch** in Metadata exactly. - The commit is submitted as a **pull request** to `master`, reviewed, and **merged** before this issue is marked done. ## Subtasks - [x] Add `virtual_resource_links` table mapping virtual resource ULID to physical resource ULIDs with uniqueness constraints. - [x] Add `ResourceEquivalenceService` to create/merge virtual resources and update links on content divergence. - [x] Add helper to compute equivalence key (hash or name) for auto-linking during resource discovery. - [x] Add `agents resource equivalence list/add/remove` CLI to manage equivalence sets (post-M6). - [x] Add conflict policy for equivalence (prefer physical over virtual; log divergence events). - [x] Add equivalence reconciliation job to re-hash linked resources on schedule. - [x] Add guard to prevent linking resources of incompatible types (type mismatch error). - [x] Update `docs/reference/resource_model.md` with physical/virtual equivalence rules and examples. - [x] Add CLI examples for equivalence list/add/remove. - [x] Tests (Behave): Add scenarios for linking/unlinking physical resources to virtual resources and divergence updates. - [x] Tests (Robot): Add Robot test that creates two identical physical resources and verifies a shared virtual resource. - [x] Tests (ASV): Add `benchmarks/virtual_resource_bench.py` for equivalence update overhead. - [x] Verify coverage >=97% via `nox -s coverage_report`. If coverage is <97% then review the current unit test coverage report at `build/coverage.xml` and use it to write new Behave based unit tests to improve code coverage. Specifically, write Behave style unit tests that are descriptively named and specifically improves coverage on whichever file has the most uncovered lines by writing tests that will target the uncovered lines in the report. Once that is done rerun `nox -s coverage_report` to verify all tests pass and coverage is above >=97%. Only mark this as complete once coverage is >=97%, if not repeat this task as many times as is needed until coverage reaches >=97%. - [x] Run `nox` (all default sessions, including benchmark), fix any errors if needed ensuring nox passes across **entire** code base, do not ignore any failure even if it seems unrelated to this commit, fix it. **Section**: ### Section 18: Deferred Work **Status**: Open

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Expected completion updated (Day 15 rebaseline): Day 47 / 2026-03-27 (previously Day 42 / 2026-03-22)

**Expected completion updated (Day 15 rebaseline):** Day 47 / 2026-03-27 (previously Day 42 / 2026-03-22)

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docs/context-management-deep-dive-v2

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docs/a2a-protocol-guide

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docs/tui-user-guide-keybindings

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Should have feature in order to satisfy the epic/legendary.

Needs Feedback

There are questions in the ticket that can not be completed until the project owner provides clarity.

1 man-hours worth of work for an expert with no learning curve.

13 man-hours worth of work for an expert with no learning curve.

2 man-hours worth of work for an expert with no learning curve.

21 man-hours worth of work for an expert with no learning curve.

3 man-hours worth of work for an expert with no learning curve.

34 man-hours worth of work for an expert with no learning curve.

5 man-hours worth of work for an expert with no learning curve.

55 man-hours worth of work for an expert with no learning curve.

8 man-hours worth of work for an expert with no learning curve.

88 man-hours worth of work for an expert with no learning curve.

Priority

Backlog

This ticket has backlogged priority and is not to be worked on yet

Priority

CI Blocker

Critical priority issue that blocks CI/CD pipeline and prevents PR merges

Priority

Critical

The priority is critical

The priority is medium

Signed-off: Owner

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

Signed-off: Scrum Master

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

Signed-off: Tech Lead

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

Spike

A ticket for learning a tool or technology that is needed to be able to do future planning and design.

The ticket has been fully implemented, completed, and merged with the source code. This label should only be applied once a ticket is closed.

Completed

A ticket that represents the same content as an existing ticket.

Duplicate

A ticket that is actively being developed.

In Progress

A ticket that has had some code completed to implement but is waiting to pass peer review and is not yet merged in.

In Review

This ticket's work started but wasn't finished. It's on hold (likely in a feature branch) and will be resumed later, either due to a blocker or a delay.

Paused

All new tickets start in this state. A developer may set it to show the ticket is unverified. This means we haven't agreed to work on it. It will either move to a verified state or be closed as wontdo.

Unverified

The issue has been verified by a developer as legitimate. It will be worked on and verified tickets are now considered part of the backlog.

Verified

This ticket has been decided it wont be done. This may mean the bug has been determined to not be real (cant verify) or the feature is one we have decided we dont want to adopt.

Wont Do

Any edits or discussion about the AI automated coding system.

Automation

Something that doesnt work as intended.

Bug

Anytime a ticket represents a discussion about a subject and doesnt fall into one of the other categories.

Discussion

An error or improvement needed in the documentation.

Documentation

Any first tier epic. That is, an epic which contains only issues as children and will not have sub-epics.

Epic

Some new functionality not present.

Feature

A type of Epic which will contain other Epics.

Legendary

A code change that restructures existing code without changing its external behavior.

Refactor

Someone needs help using the project.

Support

A generic task that doesnt fit into the other type categories.

Task