Fixed scientific paper so it can get to throught he discovery stage now

examples/scientific_paper_writer.yaml

@@ -282,14 +282,8 @@ agents:
                 msg = msg.replace('GOTO_DISCOVERY:', '', 1).strip()
                 print(f"DEBUG discovery_controller: extracted msg='{msg}'", file=sys.stderr)
 
-            # Check if this is a pass-through message from an ask agent (no SET_ prefix and not from user)
-            # These should be shown directly to the user with DISCOVERY_RESPONSE prefix
-            if not msg.startswith('SET_') and not msg.startswith('GOTO_') and not msg.startswith('ROUTE_') and '?' in msg:
-                # This is a question from an ask agent, show it to the user without routing again
-                result = f"DISCOVERY_RESPONSE:{msg}"
-                print(f"DEBUG discovery_controller: detected question, returning: {result}", file=sys.stderr)
             # Process SET_ responses from ask agents
-            elif 'SET_TOPIC:' in msg:
+            if 'SET_TOPIC:' in msg:
                 topic = msg.replace('SET_TOPIC:', '').strip()
                 context['paper_details']['topic'] = topic
                 result = f"DISCOVERY_RESPONSE:Thank you, topic has been set to \"{topic}\"\n\nCan you please specify the length, you would like to target for this paper."
@@ -338,6 +332,8 @@ agents:
     config:
       provider: openai
       model: gpt-3.5-turbo
+      memory_enabled: true
+      max_history: 10
       system_prompt: |
         You are an assistant helping to define a scientific paper. If the user has not yet provided a topic, ask them
         "What topic would you like to write about?" If the user's answer isn't clear, ask clarifying questions until
@@ -350,6 +346,8 @@ agents:
     config:
       provider: openai
       model: gpt-3.5-turbo
+      memory_enabled: true
+      max_history: 10
       system_prompt: |
         The topic has just been set. If the user has not yet provided information about the desired length, ask them
         "What length would you like for this paper? You can specify in pages, paragraphs, or word count." If the user
@@ -364,6 +362,8 @@ agents:
     config:
       provider: openai
       model: gpt-3.5-turbo
+      memory_enabled: true
+      max_history: 10
       system_prompt: |
         The length has just been set. If the user has not yet provided information about the target audience, ask them
         "Who is the target audience for this paper? (e.g., general public, experts, academics, etc.)" If the user
@@ -376,6 +376,8 @@ agents:
     config:
       provider: openai
       model: gpt-3.5-turbo
+      memory_enabled: true
+      max_history: 10
       system_prompt: |
         The audience has just been set. If the user has not yet provided information about publication plans, ask them
         "Do you plan to submit this paper to a specific publication or journal?" If the user doesnt give an answer
@@ -390,6 +392,8 @@ agents:
     config:
       provider: openai
       model: gpt-3.5-turbo
+      memory_enabled: true
+      max_history: 10
       system_prompt: |
         The intended publication has just been set. If the user has not yet provided information about the desired
         format, ask them "What format would you like for this paper? (Note: Currently only 'latex' is supported.)"
@@ -407,6 +411,8 @@ agents:
     config:
       provider: openai
       model: gpt-3.5-turbo
+      memory_enabled: true
+      max_history: 10
       system_prompt: |
         If the user has not yet been asked about other requirements, ask them "Are there any other requirements or
         specifications that should be considered for this paper?" If the user doesnt give an answer sufficiently