Proposal: update specification — restructure monolithic spec into docs/specification/ directory #3557

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opened 2026-04-05 19:35:40 +00:00 by freemo · 3 comments

freemo commented 2026-04-05 19:35:40 +00:00

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Proposal: Specification Restructure

Type: Spec structural change (requires human approval before implementation)

What Changed in the Implementation

No specific implementation change triggered this — this is a proactive structural improvement identified during spec-updater cycle 1 (2026-04-05).

Current State

docs/specification.md is a single monolithic file of 46,597 lines. The spec-updater guidelines specify that when the spec exceeds ~3,000 lines, it should be restructured into a docs/specification/ directory with logical sub-documents.

Proposed Change

Restructure docs/specification.md into a docs/specification/ directory with the following logical sub-documents:

docs/specification/
├── index.md              # Root index with links to all sections
├── overview.md           # Overview, standards alignment, glossary
├── cli-commands.md       # Full CLI command reference (currently the largest section)
├── architecture.md       # System architecture, layers, components
├── data-model.md         # Domain models, database schema
├── plan-lifecycle.md     # Plan phases, decisions, corrections
├── acms.md               # Advanced Context Management System
├── lsp-integration.md    # LSP integration details
├── a2a-protocol.md       # A2A protocol details
├── server-architecture.md # Server and client architecture
└── security.md           # Safety profiles, sandbox, checkpoints

Rationale

1. Navigability: A 46,597-line file is extremely difficult to navigate, search, and maintain
2. Parallel editing: Multiple agents working on different spec sections will have fewer merge conflicts
3. Spec-updater guidelines: The CONTRIBUTING.md and spec-updater instructions explicitly call for this split when the spec exceeds ~3,000 lines
4. Tooling: Most editors and diff tools struggle with files this large

Scope

• All sections of docs/specification.md (46,597 lines)
• mkdocs.yml navigation configuration
• Any cross-references within the spec (internal links)
• Any external references to docs/specification.md in other docs

Implementation Notes

• The split should be purely structural — no content changes
• All existing anchors/links should be preserved or redirected
• The docs/specification/index.md should serve as the entry point
• MkDocs navigation in mkdocs.yml will need updating

Current vs Proposed

Current: Single file docs/specification.md (46,597 lines)

Proposed: Directory docs/specification/ with ~10 sub-documents averaging ~4,600 lines each

---

Automated by CleverAgents Bot
Supervisor: Spec Evolution | Agent: ca-spec-updater

## Proposal: Specification Restructure **Type:** Spec structural change (requires human approval before implementation) ### What Changed in the Implementation No specific implementation change triggered this — this is a proactive structural improvement identified during spec-updater cycle 1 (2026-04-05). ### Current State `docs/specification.md` is a **single monolithic file of 46,597 lines**. The spec-updater guidelines specify that when the spec exceeds ~3,000 lines, it should be restructured into a `docs/specification/` directory with logical sub-documents. ### Proposed Change Restructure `docs/specification.md` into a `docs/specification/` directory with the following logical sub-documents: ``` docs/specification/ ├── index.md # Root index with links to all sections ├── overview.md # Overview, standards alignment, glossary ├── cli-commands.md # Full CLI command reference (currently the largest section) ├── architecture.md # System architecture, layers, components ├── data-model.md # Domain models, database schema ├── plan-lifecycle.md # Plan phases, decisions, corrections ├── acms.md # Advanced Context Management System ├── lsp-integration.md # LSP integration details ├── a2a-protocol.md # A2A protocol details ├── server-architecture.md # Server and client architecture └── security.md # Safety profiles, sandbox, checkpoints ``` ### Rationale 1. **Navigability**: A 46,597-line file is extremely difficult to navigate, search, and maintain 2. **Parallel editing**: Multiple agents working on different spec sections will have fewer merge conflicts 3. **Spec-updater guidelines**: The CONTRIBUTING.md and spec-updater instructions explicitly call for this split when the spec exceeds ~3,000 lines 4. **Tooling**: Most editors and diff tools struggle with files this large ### Scope - All sections of `docs/specification.md` (46,597 lines) - `mkdocs.yml` navigation configuration - Any cross-references within the spec (internal links) - Any external references to `docs/specification.md` in other docs ### Implementation Notes - The split should be purely structural — no content changes - All existing anchors/links should be preserved or redirected - The `docs/specification/index.md` should serve as the entry point - MkDocs navigation in `mkdocs.yml` will need updating ### Current vs Proposed **Current:** Single file `docs/specification.md` (46,597 lines) **Proposed:** Directory `docs/specification/` with ~10 sub-documents averaging ~4,600 lines each --- **Automated by CleverAgents Bot** Supervisor: Spec Evolution | Agent: ca-spec-updater

freemo referenced this issue 2026-04-05 19:35:55 +00:00

[Automated] CleverAgents Build Session - 2026-04-05 #3377

freemo referenced this issue 2026-04-05 19:45:38 +00:00

[Automated] CleverAgents Build Session - 2026-04-05 #3377

freemo commented 2026-04-05 20:00:33 +00:00

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This issue is a proposal awaiting human review (needs feedback label). I will not modify its state — a human must approve or reject it.

Summary for human reviewer: The spec-updater proposes restructuring the monolithic docs/specification.md (46,597 lines) into a docs/specification/ directory with ~10 sub-documents. This is a structural-only change with no content modifications. The rationale is sound — navigability, reduced merge conflicts, and alignment with spec-updater guidelines. However, this is a significant structural change that affects cross-references, MkDocs configuration, and all agents that reference spec line numbers.

---

Automated by CleverAgents Bot
Supervisor: Human Liaison | Agent: ca-human-liaison

This issue is a proposal awaiting human review (`needs feedback` label). I will not modify its state — a human must approve or reject it. **Summary for human reviewer:** The spec-updater proposes restructuring the monolithic `docs/specification.md` (46,597 lines) into a `docs/specification/` directory with ~10 sub-documents. This is a structural-only change with no content modifications. The rationale is sound — navigability, reduced merge conflicts, and alignment with spec-updater guidelines. However, this is a significant structural change that affects cross-references, MkDocs configuration, and all agents that reference spec line numbers. --- **Automated by CleverAgents Bot** Supervisor: Human Liaison | Agent: ca-human-liaison

freemo referenced this issue 2026-04-05 20:08:39 +00:00

[Automated] CleverAgents Build Session - 2026-04-05 #3572

freemo referenced this issue 2026-04-06 06:16:34 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 06:19:03 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 06:50:28 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 07:21:01 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 08:07:20 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 08:53:57 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 09:25:55 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 10:11:39 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 10:58:25 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 11:44:10 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 12:30:21 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 13:16:16 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

freemo referenced this issue 2026-04-06 14:02:24 +00:00

[Automated] CleverAgents Build Session - 2026-04-06 #3775

HAL9000 referenced this issue 2026-04-08 19:33:22 +00:00

[Automated] CleverAgents Build Session - 2026-04-08 #4799

freemo commented 2026-04-08 20:01:29 +00:00

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@HAL9000 approved, but aggressively check for duplicates as I think there is more than one duplicate of this ticket.

@HAL9000 approved, but aggressively check for duplicates as I think there is more than one duplicate of this ticket.

HAL9000 referenced this issue 2026-04-08 20:04:16 +00:00

Proposal: update specification — split monolithic docs/specification.md (46,738 lines) into docs/specification/ directory #4749

HAL9000 commented 2026-04-08 20:05:02 +00:00

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Issue triaged by project owner — approved by @freemo (2026-04-08):

• State: Verified — @freemo explicitly approved this proposal. Duplicate check performed: #4749 was a duplicate and has been closed.
• Priority: Medium — Important structural improvement but not blocking any milestone work. The spec is functional as-is.
• Milestone: v3.5.0 — Autonomy Hardening milestone (documentation infrastructure is part of this milestone's scope)
• Story Points: 8 (XL) — Splitting a 46,000+ line file into 10+ sub-documents with preserved cross-references, MkDocs navigation updates, and all agent reference updates is a 2-4 day effort
• MoSCoW: Should Have — The spec-updater guidelines explicitly call for this split at >3,000 lines. It improves maintainability and reduces merge conflicts. Not blocking but important for long-term project health.
• Parent Epic: #369 (Epic: Large Project Autonomy & Context) — spec maintainability directly enables autonomous agents to work effectively with the spec

Duplicate check: #4749 was a duplicate (same proposal, created 2026-04-08). Closed as duplicate.

---

Automated by CleverAgents Bot
Supervisor: Project Owner | Agent: project-owner

Issue triaged by project owner — approved by @freemo (2026-04-08): - **State**: Verified — @freemo explicitly approved this proposal. Duplicate check performed: #4749 was a duplicate and has been closed. - **Priority**: Medium — Important structural improvement but not blocking any milestone work. The spec is functional as-is. - **Milestone**: v3.5.0 — Autonomy Hardening milestone (documentation infrastructure is part of this milestone's scope) - **Story Points**: 8 (XL) — Splitting a 46,000+ line file into 10+ sub-documents with preserved cross-references, MkDocs navigation updates, and all agent reference updates is a 2-4 day effort - **MoSCoW**: Should Have — The spec-updater guidelines explicitly call for this split at >3,000 lines. It improves maintainability and reduces merge conflicts. Not blocking but important for long-term project health. - **Parent Epic**: #369 (Epic: Large Project Autonomy & Context) — spec maintainability directly enables autonomous agents to work effectively with the spec **Duplicate check**: #4749 was a duplicate (same proposal, created 2026-04-08). Closed as duplicate. --- **Automated by CleverAgents Bot** Supervisor: Project Owner | Agent: project-owner

HAL9000 added this to the v3.5.0 milestone 2026-04-08 20:05:29 +00:00

HAL9000 added a new dependency 2026-04-08 20:06:50 +00:00

#369 Epic: Large Project Autonomy & Context

HAL9000 referenced this issue 2026-04-08 20:07:14 +00:00

[Automated] CleverAgents Build Session - 2026-04-08 #4799

HAL9000 referenced this issue 2026-04-28 14:56:09 +00:00

docs(specification): split monolithic spec into docs/specification/ directory #10920

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pr-10681

test/issue-10510-mcptooladapter-rlock-tdd

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pr-9247

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chore/timeline-day-105-2026-04-15

docs/timeline-update-2026-04-15-auto-time-1

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fix/plan-phase-migration-raw-sql-root-plan-id

auto-arch-12/spec-acms-context-tier-hydrator

timeline/day-106-2026-04-15-auto-time-1

feat/invariant-enforcement-strategize

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docs/auto-docs-4-fix-conflicts

docs/auto-docs-1-milestone-docs-v3.0.0-v3.1.0

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pr-9220

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pr-9214

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feat/v3.3.0-merge-conflict-detection

uat/checkpoint-rollback-merge-tests

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auto-time-1-day103-cycle1-session6

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auto-time-1-day103-cycle2

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uat-a2a-facade-tests-v350

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docs/auto-time-1-timeline-update-2026-04-14

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docs/action-config-schema-api

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docs/validation-gate-empty-run-guard

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feat/issue-6361-shell-safety-service-tui

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docs/timeline-day-102-2026-04-12

docs/cycle-2-git-worktree-acms-hydrator

spec/arch-sandbox-cleanup-discovery

docs/timeline-day96-2026-04-08

docs/auto-docs-cycle-11

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fix/v3.4.0/context-settings-defaults

docs/add-example-repl-and-actor-run

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spec/document-reconciliation-blocked-error-5942

fix/issue-7482-git-log-injection

spec/devcontainer-auto-discovery-schema

feat/issue-6350-conversation-content-pruning

docs/update-module-guides-2026-04-10

timeline/day-100-2026-04-10-auto-time-cycle1

timeline/day-99-2026-04-09-auto-time-v2

docs/cycle-3-module-guides

timeline/day-99-2026-04-09-auto-time

pr-4226

spec/additional-llm-providers-gemini-groq-cohere-together-ollama-mistral

spec/document-context-tier-hydrator-6175

docs/timeline-day99-2026-04-09

spec/invariant-cli-clarifications

docs/add-example-project-init-and-context-management

spec/reconciliation-blocked-error-documentation

spec/fix-invariant-precedence-reference-5861

spec/fix-plan-correct-accepts-plan-id-5558

spec/fix-validation-attach-synopsis-5328

docs/timeline-day-99-cycle-1

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fix/actor-context-list-regex-arg

docs/timeline-day-99-cycle-3

spec/arch-security-mode-init

docs/auto-docs-cycle-9-updates

fix-resource-fix-resource-remove-to-check-correct-edge-table

feat/issue-6434-tui-env-var-expansion

fix/issue-6321-plan-prompt-timing-field

fix/issue-6322-resource-add-url-flag

feat/issue-6348-sessions-screen

spec/plan-show-command

temp

feat/harden-label-restrictions-1775753628

spec/invariant-reconciliation-failure-behavior

spec/add-reconciliation-failure-behavior-5942

spec/architecture-corrections-cycle3

spec/checkpoint-trigger-names-and-config-key-fix

spec/fix-ai-provider-interface-5801

spec/azure-api-version-default-update

docs/auto-docs-writer-cycle1-labels

spec/fix-resource-type-yaml-format-5622

spec/add-plan-revert-resume-commands-5574

docs/auto-docs-cycle-1-2026-04-09

spec/plan-correct-plan-id-or-decision-id-5558

spec/fix-subgraph-node-actor-ref-field-5427

issue/5284-master-ci-fix

timeline/day-99-2026-04-09-v2

merge-me

docs/session-3377-initial-docs-update

fix/llm-provider-subpackage-exports

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spec/architecture-corrections-cycle2

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docs/timeline-day98-2026-04-08-v2

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docs/ca-docs-writer-v3.8.1-2026-04-05

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improvement/agent-test-infra-health-spam-fix-v2

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Points

13

13 man-hours worth of work for an expert with no learning curve.

  

Points

2

2 man-hours worth of work for an expert with no learning curve.

  

Points

21

21 man-hours worth of work for an expert with no learning curve.

  

Points

3

3 man-hours worth of work for an expert with no learning curve.

  

Points

34

34 man-hours worth of work for an expert with no learning curve.

  

Points

5

5 man-hours worth of work for an expert with no learning curve.

  

Points

55

55 man-hours worth of work for an expert with no learning curve.

  

Points

8

8 man-hours worth of work for an expert with no learning curve.

  

Points

88

88 man-hours worth of work for an expert with no learning curve.

  

Priority

Backlog

This ticket has backlogged priority and is not to be worked on yet

  

Priority

CI Blocker

Critical priority issue that blocks CI/CD pipeline and prevents PR merges

  

Priority

Critical

The priority is critical

  

Priority

High

The priority is high

  

Priority

Low

The priority is low

  

Priority

Medium

The priority is medium

  

Signed-off: Owner

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

  

Signed-off: Scrum Master

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

  

Signed-off: Tech Lead

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

  

Spike

A ticket for learning a tool or technology that is needed to be able to do future planning and design.

  

State

Completed

The ticket has been fully implemented, completed, and merged with the source code. This label should only be applied once a ticket is closed.

  

State

Duplicate

A ticket that represents the same content as an existing ticket.

  

State

In Progress

A ticket that is actively being developed.

  

State

In Review

A ticket that has had some code completed to implement but is waiting to pass peer review and is not yet merged in.

  

State

Paused

This ticket's work started but wasn't finished. It's on hold (likely in a feature branch) and will be resumed later, either due to a blocker or a delay.

  

State

Unverified

All new tickets start in this state. A developer may set it to show the ticket is unverified. This means we haven't agreed to work on it. It will either move to a verified state or be closed as wontdo.

  

State

Verified

The issue has been verified by a developer as legitimate. It will be worked on and verified tickets are now considered part of the backlog.

  

State

Wont Do

This ticket has been decided it wont be done. This may mean the bug has been determined to not be real (cant verify) or the feature is one we have decided we dont want to adopt.

  

Type

Automation

Any edits or discussion about the AI automated coding system.

  

Type

Bug

Something that doesnt work as intended.

  

Type

Discussion

Anytime a ticket represents a discussion about a subject and doesnt fall into one of the other categories.

  

Type

Documentation

An error or improvement needed in the documentation.

  

Type

Epic

Any first tier epic. That is, an epic which contains only issues as children and will not have sub-epics.

  

Type

Feature

Some new functionality not present.

  

Type

Legendary

A type of Epic which will contain other Epics.

  

Type

Refactor

A code change that restructures existing code without changing its external behavior.

  

Type

Support

Someone needs help using the project.

  

Type

Task

A generic task that doesnt fit into the other type categories.

  

Type

Testing

Work exclusively focusing on fixing or expanding testing.

No labels

auto/needs-reevaluation

controller-managed

auto/blocked-by-deps

auto/ci-timeout

auto/claimed-implementer

auto/claimed-merge

auto/claimed-reviewer

auto/driver-down

auto/invariant-violation

auto/last-attempt-tier-0

auto/last-attempt-tier-1

auto/last-attempt-tier-2

auto/last-attempt-tier-min

Automation Tracking

auto/needs-conflict-resolution

auto/needs-implementer

auto/postmortem

auto/ready-to-merge

auto/restart-throttled

auto/revert

auto/sentinel

auto/stale-inactivity

auto/unstable

Blocked

Bounty

$100

Bounty

$1000

Bounty

$10000

Bounty

$20

Bounty

$2000

Bounty

$250

Bounty

$50

Bounty

$500

Bounty

$5000

Bounty

$750

MoSCoW

Could have

MoSCoW

Must have

MoSCoW

Should have

Needs Feedback

Points

1

Points

13

Points

2

Points

21

Points

3

Points

34

Points

5

Points

55

Points

8

Points

88

Priority

Backlog

Priority

CI Blocker

Priority

Critical

Priority

High

Priority

Low

Priority

Medium

Signed-off: Owner

Signed-off: Scrum Master

Signed-off: Tech Lead

Spike

State

Completed

State

Duplicate

State

In Progress

State

In Review

State

Paused

State

Unverified

State

Verified

State

Wont Do

Type

Automation

Type

Bug

Type

Discussion

Type

Documentation

Type

Epic

Type

Feature

Type

Legendary

Type

Refactor

Type

Support

Type

Task

Type

Testing

Milestone

Clear milestone

No items

No milestone

v3.5.0

Projects

Clear projects

No items

No project

Assignees

Clear assignees

No assignees

2 participants

Notifications

Subscribe

Due date

The due date is invalid or out of range. Please use the format "yyyy-mm-dd".

No due date set.

Blocks

#369 Epic: Large Project Autonomy & Context

cleveragents/cleveragents-core

Reference

cleveragents/cleveragents-core#3557

No description provided.