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feat(acms): implement UKO ontology inference engine — resource-to-RDF mapping and relationship inference #3086

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opened 2026-04-05 05:29:29 +00:00 by freemo · 2 comments

freemo commented

2026-04-05 05:29:29 +00:00

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Branch: feat/v36/uko-inference-engine
Commit Message: feat(acms): implement UKO ontology inference engine — resource-to-RDF mapping and relationship inference
Milestone: v3.6.0
Parent Epic: #367

Background

The UKO system must automatically infer RDF relationships from content analysis. The inference engine maps CleverAgents resource objects to UKO ontology classes, infers relationships between resources (e.g., file-in-directory, code-imports-module), and populates the triple store with these inferred triples.

Expected Behavior

UkoInferenceEngine class that:
- Accepts a resource object and maps it to the appropriate UKO Layer 2 class
- Infers structural relationships (containment, dependency, similarity)
- Produces a set of RDF triples for insertion into the triple store
- Supports pluggable inference strategies (structural, semantic, temporal)
Integration with RdfTripleStoreService for triple persistence
All inference is statically typed and passes nox -e typecheck

Dependencies

Blocked by: #3082 (triple store service must exist first)
Blocks: #367

Subtasks

Define UkoInferenceEngine abstract base class
Implement StructuralInferenceStrategy (containment, file hierarchy)
Implement ResourceToUkoMapper for mapping resource types to UKO classes
Wire inference engine to resource lifecycle events
Write Behave unit tests for each inference strategy
Ensure nox -e typecheck passes with no suppressions

Definition of Done

All subtasks completed
Tests written and passing
All nox stages pass
Coverage >= 97%

Automated by CleverAgents Bot
Supervisor: Acting on behalf of: UAT Testing | Agent: ca-epic-planner

## Metadata - **Branch**: `feat/v36/uko-inference-engine` - **Commit Message**: `feat(acms): implement UKO ontology inference engine — resource-to-RDF mapping and relationship inference` - **Milestone**: v3.6.0 - **Parent Epic**: #367 ## Background The UKO system must automatically infer RDF relationships from content analysis. The inference engine maps CleverAgents resource objects to UKO ontology classes, infers relationships between resources (e.g., file-in-directory, code-imports-module), and populates the triple store with these inferred triples. ## Expected Behavior - `UkoInferenceEngine` class that: - Accepts a resource object and maps it to the appropriate UKO Layer 2 class - Infers structural relationships (containment, dependency, similarity) - Produces a set of RDF triples for insertion into the triple store - Supports pluggable inference strategies (structural, semantic, temporal) - Integration with `RdfTripleStoreService` for triple persistence - All inference is statically typed and passes `nox -e typecheck` ## Dependencies - Blocked by: #3082 (triple store service must exist first) - Blocks: #367 ## Subtasks - [ ] Define `UkoInferenceEngine` abstract base class - [ ] Implement `StructuralInferenceStrategy` (containment, file hierarchy) - [ ] Implement `ResourceToUkoMapper` for mapping resource types to UKO classes - [ ] Wire inference engine to resource lifecycle events - [ ] Write Behave unit tests for each inference strategy - [ ] Ensure `nox -e typecheck` passes with no suppressions ## Definition of Done - [ ] All subtasks completed - [ ] Tests written and passing - [ ] All nox stages pass - [ ] Coverage >= 97% --- **Automated by CleverAgents Bot** Supervisor: Acting on behalf of: UAT Testing | Agent: ca-epic-planner

freemo added this to the v3.6.0 milestone

2026-04-05 05:29:57 +00:00

freemo added a new dependency

2026-04-05 05:31:45 +00:00

#3082 feat: Transition issue #3082 to State/Verified

freemo referenced this issue

2026-04-05 05:33:21 +00:00

feat(acms): implement multi-agent RDF knowledge sharing — agent-scoped named graphs and cross-agent query federation #3087

freemo added a new dependency

2026-04-05 05:38:18 +00:00

#3087 feat(acms): implement multi-agent RDF knowledge sharing — agent-scoped named graphs and cross-agent query federation

freemo referenced this issue

2026-04-05 05:40:03 +00:00

Epic: Multi-Agent RDF System #367

freemo added a new dependency

2026-04-05 05:44:49 +00:00

#367 Epic: Multi-Agent RDF System

freemo referenced this issue

2026-04-05 05:45:27 +00:00

Task: Autonomous build progress report — 2026-04-05 #3075

freemo commented

2026-04-05 05:53:31 +00:00

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Transition attempt: State/Unverified -> State/Verified

Preconditions:

No blocking conditions identified for this transition (not Paused).

Action attempted:

Removed old state label: State/Unverified
Added new state label: State/Verified

Current labels before change: State/Unverified, Priority/Medium, Type/Feature
Note: The Forgejo API wrapper used in this session did not apply label changes automatically for issue labels. The issue's labels remain unchanged in the UI.

Recommended next steps for maintainers:

Manually remove the State/Unverified label from issue #3086 and add State/Verified
Retain Priority/Medium and Type/Feature unless otherwise needed

If you want me to retry the label updates via alternative means, say the word.

Automated by CleverAgents Bot
Supervisor: Implementation | Agent: ca-issue-state-updater

Transition attempt: State/Unverified -> State/Verified Preconditions: - No blocking conditions identified for this transition (not Paused). Action attempted: - Removed old state label: State/Unverified - Added new state label: State/Verified Current labels before change: State/Unverified, Priority/Medium, Type/Feature Note: The Forgejo API wrapper used in this session did not apply label changes automatically for issue labels. The issue's labels remain unchanged in the UI. Recommended next steps for maintainers: - Manually remove the State/Unverified label from issue #3086 and add State/Verified - Retain Priority/Medium and Type/Feature unless otherwise needed If you want me to retry the label updates via alternative means, say the word. --- **Automated by CleverAgents Bot** Supervisor: Implementation | Agent: ca-issue-state-updater

freemo referenced this issue

2026-04-05 05:57:00 +00:00

feat(acms): define UKO RDF ontology schema — Layer 0 core classes and Layer 1 domain vocabularies #3081

freemo referenced this issue

2026-04-05 05:57:04 +00:00

feat: Transition issue #3082 to State/Verified #3082

freemo commented

2026-04-05 05:57:06 +00:00

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Issue triaged by project owner:

State: Verified ✅
Priority: Medium — inference engine depends on the triple store (#3082) being available
Milestone: v3.6.0 (already assigned)
MoSCoW: Should Have — the inference engine maps resources to RDF triples. Important for the full UKO system but not blocking other v3.6.0 work.
Parent Epic: #367 (dependency link already exists)

Dependency chain: #3081 → #3082 → #3086 → #3087. Blocked by #3082.

Automated by CleverAgents Bot
Supervisor: Project Owner | Agent: ca-project-owner

Issue triaged by project owner: - **State**: Verified ✅ - **Priority**: Medium — inference engine depends on the triple store (#3082) being available - **Milestone**: v3.6.0 (already assigned) - **MoSCoW**: Should Have — the inference engine maps resources to RDF triples. Important for the full UKO system but not blocking other v3.6.0 work. - **Parent Epic**: #367 (dependency link already exists) **Dependency chain**: #3081 → #3082 → **#3086** → #3087. Blocked by #3082. --- **Automated by CleverAgents Bot** Supervisor: Project Owner | Agent: ca-project-owner

freemo referenced this issue

2026-04-05 05:57:10 +00:00

feat(acms): implement multi-agent RDF knowledge sharing — agent-scoped named graphs and cross-agent query federation #3087

freemo referenced this issue

2026-04-05 06:15:23 +00:00

[CA-AUTO] UAT Pool Supervisor — v3.2.0–v3.7.0 — Session Tracker #3094

freemo removed this from the v3.6.0 milestone

2026-04-07 00:20:05 +00:00

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pr-9214

feat/v3.3.0-subplan-status-tracking

feat/v3.3.0-merge-conflict-detection

uat/checkpoint-rollback-merge-tests

fix/pr-review-pool-supervisor-prefix-mismatch

feat/v3.3.0-spawn-subplan-step

auto-time-1-day103-cycle1-session6

feat/v3.8.0-agent-card-endpoint

docs/auto-docs-cycle-24-showcase-nav

auto-inf-3-consolidate-behave-fixtures

fix/issue-7663-docs-writer-missing

auto-time-1-day103-cycle2

docs/timeline-day-104-auto-time-1

auto-arch-16/spec-xml-prompt-injection-mitigation

bugfix/m4-invariant-persistence

uat-a2a-facade-tests-v350

bugfix/m3-behave-parallel-failed-chunk-logs

bugfix/7664-automation-tracking-label-requirements

docs/auto-time-1-timeline-update-2026-04-14

docs/auto-docs-1-milestone-v3-updates

fix/issue-6344-plan-execute-rich-output

docs/action-config-schema-api

fix/bug-hunt-supervisor-nonexistent-file-preflight

fix/retry-policy-model-missing-fields

docs/validation-gate-empty-run-guard

auto-arch-15/spec-retry-policy-canonical-fields

docs/lockservice-advisory-locking

docs/changelog-plan-fix-4197

spec/milestone-plan-section

docs/update-changelog-recent-features

fix/test-infra-remove-redundant-python-variable-robot-files

timeline/day-104-2026-04-14-cycle2

fix/bdd-feature-file-tags

auto-arch-13/spec-default-automation-profile

docs/auto-docs-cycle-1-2026-04-12

docs/cycle-1-git-worktree-sandbox

spec/architecture-critical-gap-fixes

docs/timeline-day-104-auto-time-2

auto-arch-1/add-v380-v390-milestone-plan

docs/developer-setup-guide

fix/auto-profile-spec-prose-description

auto-arch-10/spec-tui-a2a-integration-layer

spec/resource-event-types-clarification

auto-docs-4/changelog-and-observability

auto-arch-4/adr-049-layered-boundary-enforcement

docs/a2a-protocol-autonomy-hardening

auto-arch-9/spec-v3.8.0-milestone-plan

docs/auto-docs-3-reference-index

auto-arch-7/spec-apply-git-worktree

docs/timeline-day104-cycle1-auto-time-4

docs/auto-docs-cycle-1-changelog-updates

auto-arch-6/adr-049-spec-restructuring

docs/auto-docs-1-v340-acms-context-management

docs/auto-docs-1-v320-v330-cli-reference

auto-arch-5/v3.9.0-milestone-plan

test/create-scripts

auto-time-1-day104

timeline/day-104-2026-04-14

docs/auto-time-4-day103-cycle5

auto-time-3-day103-cycle4

auto-docs-5-architecture-overview

spec/three-way-merge-strategy-v3.3.0

spec/checkpoint-system-v3.3.0

auto-docs-4-api-docs-update

auto-docs-1-changelog-expansion

spec/invariant-management-system-v3.2.0

pr-8289

spec/plan-correction-engine-v3.2.0

spec/layered-architecture-boundary-policy

spec/tui-materializer-a2a-integration-v3.7.0

spec/decision-recording-system-v3.2.0

docs/auto-docs-1-milestone-overview

pr-7484

pr-4212

auto-arch-3/v3.8.0-milestone-plan

auto-docs-6/troubleshooting-and-config

auto-time-1-day103-session5

auto-docs-5/contributor-guide-and-readme

docs/plan-tree-ulid-examples

docs/m3-spec-clarify-path-datetime-plugin-contracts

docs/auto-docs-cycle-10-diagnostics-ref

auto-docs-3/user-guide-and-architecture

docs/cycle-7-changelog-update

spec/reconciliation-failure-behavior

auto-docs-2/api-documentation

auto-arch-2/adr-053-repositories-decomposition

auto-docs-1/release-notes-v3.0-v3.1

spec/update-validation-attach-project-delete

spec/architecture-cycle2-impl-clarifications

auto-arch-1/adr-049-052-violations

auto-time-1-day103

docs/auto-docs-cycle-13-updates

docs/timeline-day-102-auto-time

timeline/day-103-2026-04-13

spec/arch-invariant-cli-completeness

spec/update-cycle1-validation-attach-project-delete

docs/add-session-management-showcase

spec/arch-sandbox-path-correction-cycle9

spec/architecture-v380-milestone-plan

docs/auto-docs-cycle-12-updates

docs/cycle-1-validation-gate-fix

docs/2026-04-08-unreleased-changelog

docs/auto-docs-cycle-2-2026-04-10

docs/session-4615-2026-04-08-cycle1

feat/issue-6361-shell-safety-service-tui

spec/architecture-cycle-25-new-features

fix/issue-6345-automation-profile-add-output

docs/timeline-day-102-2026-04-12

docs/cycle-2-git-worktree-acms-hydrator

spec/arch-sandbox-cleanup-discovery

docs/timeline-day96-2026-04-08

docs/auto-docs-cycle-11

spec/fix-sandbox-strategy-protocol-name

spec/arch-acms-tier-hydration

fix/v3.4.0/context-settings-defaults

docs/add-example-repl-and-actor-run

docs/auto-docs-cycle-10-updates

docs/session-4-2026-04-08-updates

docs/showcase-all-examples-consolidated

docs/timeline-day-97

docs/acms-context-hydrator-cycle2

docs/add-example-output-format-flags

spec/arch-failfast-cancel-semantics

timeline/day-101-2026-04-11

docs/timeline-day99-2026-04-09-v2

docs/auto-docs-cycle-2-worktree-acms

spec/architecture-v3.8.0-milestone-plan

docs/api-lsp-acms-reference

improvement/agent-bug-hunt-pool-supervisor-yaml-syntax-fix

spec/project-delete-deleted-at-field

spec/architecture-provider-registry-tui-materializer

spec/document-reconciliation-blocked-error-5942

fix/issue-7482-git-log-injection

spec/devcontainer-auto-discovery-schema

feat/issue-6350-conversation-content-pruning

docs/update-module-guides-2026-04-10

timeline/day-100-2026-04-10-auto-time-cycle1

timeline/day-99-2026-04-09-auto-time-v2

docs/cycle-3-module-guides

timeline/day-99-2026-04-09-auto-time

pr-4226

spec/additional-llm-providers-gemini-groq-cohere-together-ollama-mistral

spec/document-context-tier-hydrator-6175

docs/timeline-day99-2026-04-09

spec/invariant-cli-clarifications

docs/add-example-project-init-and-context-management

spec/reconciliation-blocked-error-documentation

spec/fix-invariant-precedence-reference-5861

spec/fix-plan-correct-accepts-plan-id-5558

spec/fix-validation-attach-synopsis-5328

docs/timeline-day-99-cycle-1

docs/timeline-day-99-cycle-2

fix/actor-context-list-regex-arg

docs/timeline-day-99-cycle-3

spec/arch-security-mode-init

docs/auto-docs-cycle-9-updates

fix-resource-fix-resource-remove-to-check-correct-edge-table

feat/issue-6434-tui-env-var-expansion

fix/issue-6321-plan-prompt-timing-field

fix/issue-6322-resource-add-url-flag

feat/issue-6348-sessions-screen

spec/plan-show-command

temp

feat/harden-label-restrictions-1775753628

spec/invariant-reconciliation-failure-behavior

spec/add-reconciliation-failure-behavior-5942

spec/architecture-corrections-cycle3

spec/checkpoint-trigger-names-and-config-key-fix

spec/fix-ai-provider-interface-5801

spec/azure-api-version-default-update

docs/auto-docs-writer-cycle1-labels

spec/fix-resource-type-yaml-format-5622

spec/add-plan-revert-resume-commands-5574

docs/auto-docs-cycle-1-2026-04-09

spec/plan-correct-plan-id-or-decision-id-5558

spec/fix-subgraph-node-actor-ref-field-5427

issue/5284-master-ci-fix

timeline/day-99-2026-04-09-v2

merge-me

docs/session-3377-initial-docs-update

fix/llm-provider-subpackage-exports

spec/arce-acronym-and-tui-keybinding-fixes

spec/architecture-corrections-cycle2

spec/architecture-corrections-cycle1

docs/cycle-1-updates

spec/tui-clarifications-session-export-persona

docs/session-4940-2026-04-08-cycle1

spec/architecture-milestone-plan-v3.2-v3.7

docs/session-4743-2026-04-08-cycle1

docs/timeline-day-98

fix/plan-lifecycle-service-rollback-method

docs/timeline-day98-2026-04-08-v2

docs/add-example-action-and-plan-management

docs/session-2026-04-06-updates

docs/ca-docs-writer-v3.8.1-2026-04-05

fix/session-tell-stub-missing-panels-and-actor-execution

improvement/agent-arch-guard-clone-failure-handling

improvement/agent-test-infra-health-spam-fix-v2

fix-tdd-invert-non-assertion-exceptions

improvement/agent-arch-guard-clone-failure

bugfix/3472-fix-tdd-inversion-logic

bugfix/989-fix-persistence-json-decode-error

improvement/agent-supervisor-tracking-labels-v2

docs/timeline-day95-v2

docs/timeline-day95-final

docs/update-lsp-api-and-changelog

fix/lsp-resource-handler-module-missing

docs/timeline-day95-final-2026-04-05

fix/a2a-plan-correct-rollback-wiring

docs/add-lsp-api-and-changelog-2026-04-05

fix/tool-registry-validation-type-discriminator

docs/v3.7.0-documentation-update

docs/ca-docs-writer-2026-04-05-cycle2

fix/invariant-set-merge-action-scope

docs/unreleased-feature-docs

fix/concurrency-cost-tracker-record-usage-race-condition

improvement/agent-ca-test-infra-improver-failure-handling

docs/update-changelog-mcp-plan-ci-2026-04-05

improvement/agent-pr-reviewer-milestone-prioritization

docs/timeline-day95-refresh-2026-04-05

improvement/agent-mandatory-labels-tracking-issues

docs/api-domain-providers-changelog-2026-04-05

docs/ca-docs-writer-2026-04-05

docs/timeline-day95-refresh

fix/skill-add-include-validation

docs/timeline-day-95-2026-04-05-update3

docs/timeline-day-95-2026-04-05-update2

docs/ci-incident-runbook-2597

improvement/agent-ca-test-infra-improver-worker-api-mode

docs/shell-safety-api-and-readme-highlights

docs/timeline-day-55-2026-04-04-v2

docs/timeline-day-55-2026-04-04

docs/timeline-day54-update3

improvement/agent-ca-test-infra-improver-fixes

spec/restructure-monolithic-to-split

docs/timeline-day54-update-v2

docs/timeline-day54-update

fix-agents

docs/shell-safety-and-domain-base-model

fix/1452-impl

fix/1473-plan-cancel

fix/1425-test

fix/1426-config

fix/1421-perf

fix/1424-impl

test/int-wf16-devcontainer

feature/m8-tui-persona-export

feature/m7-post-resource-equivalence

test/e2e-m4-acceptance

feature/m6-tantivy-backend

feature/m6-estimation

feature/m6-estimation-report-model

feature/observability-prometheus-audit

feat/server-auth-namespace

feature/m8-session-editing

feature/llm-actor-subplan-wiring

feature/m8-tui-first-run-actor-selection

feature/m8-tui-conversation-block-catalog

feature/m8-tui-settings-screen

feature/m7-e2e-porting

feature/m6-estimation-historical-stats

feature/m8-tui-persona-export-import

feature/m8-tui-sessions-screen

feature/m7-graph-backend

feature/m8-tui-block-context-menu

feature/m8-tui-tool-call-expand

feature/m4-missing-builtin-tools

docs/v3.7.0-release-docs

feature/m8-tui-session-export

test/e2e-wf15-disaster-recovery

test/e2e-wf03-refactoring

test/e2e-m3-acceptance

feature/m8-tui-prompt-history

feature/m8-tui-actor-thought-block-rendering

bugfix/m6-build-hierarchy-child-ids

feature/resource-inheritance-wiring

test/e2e-wf09-session

test/e2e-wf06-doc-generation

test/e2e-wf08-cloud-infra

test/e2e-wf02-test-generation

test/e2e-wf13-custom-profile

test/e2e-wf11-graph-actor

test/e2e-wf01-hello-world

test/int-wf17-explicit-container

test/int-wf12-hierarchical

test/int-wf15-disaster-recovery

test/int-wf13-custom-profile

test/int-wf03-refactoring

test/int-wf11-graph-actor

test/int-wf10-batch

test/int-wf09-session

feature/m3-tdd-issue-consistency-gate

feature/m3-invariant-enforcement-strategize

test/int-wf18-container-clone

test/int-wf01-hello-world

feature/m6-diagnostic-dashboard-health-categories

feature/m6-cli-polish

fix/e2e-db-isolation

feature/m7-post-tui

feature/m9-asgi-endpoint

feature/m7-post-server

tdd/m7-audit-session-race

tdd/m3-skill-add-regression

feature/m9-remote-repos

feature/fs-mount-file-types

tdd/container-resolve-crash

test/e2e-m1-acceptance

test/e2e-m2-acceptance

eugen.thaci-patch-3

eugen.thaci-patch-2

eugen.thaci-patch-1

aditya-fix-latest

feature/m4-secret-masking-llm-context

aditya-fix

refactor/m3-replace-mktemp

refactor/m3-remove-unittest-mock-integration

refactor/m3-remove-robot-mock-imports

refactor/m3-remove-mock-llm-integration

docs/improved-menu-adr

feature/m7-post-auth

feature/m3-fix-resource-bootstrap

feature/post-safety-profile-tests

integration/batch-2026-03-02

feat/slipcover

docs/safety-profile-spec-composition

integrate/freemo-batch-1

feature/m4-error-recovery

feature/m4-security-template

feature/m3-validation-pipeline

develop-aditya-2

feature/m3-diff-review

feature/m3-validation-apply

feature/m6-acp-stubs

feature/m4-correction-flows

feature/m1-plan-execute-runtime

feature/m4-security-exceptions

feature/m4-definition-of-done

feature/m4-correction-model

feature/m1-apply-pipeline

feature/m5-automation-profiles

feature/m2-lsp-stubs

feature/m3-invariants

feature/m1-actor-runtime

feature/docs-v2-restore

feature/m6-perf-scale

feature/m6-validation-edge

feature/m3-session-cli

feature/m1-persistence-tests-robot

feature/m3-config-cli

feature/m1-cli-tests-robot

feature/m5-subplan-tests

feature/m6-review-playbook

feature/aditya-m3-actor-loader

feature/m3-skill-protocol

feature/m4-automation-legacy-cleanup

feature/m3-change-model

feature/m3-skill-git

feature/m3-skill-registry

feature/m4-security-eval

fix/robot-tests

feature/m3-actor-registry

feature/m3-tool-cli

feature/m4-automation-profiles-cli

feature/m2-resource-cli-extensions

feature/m3-actor-loader

feature/m3-tool-domain-robot

feature/m3-skill-domain-robot

feature/m3-skill-cli

feature/m1-resource-db-robot-tests

feature/m3-session-domain-robot

feature/m1-persistence-tests

feature/m1-cli-tests

ten-branches-backup

feature/m3-skill-schema

feature/m3-session-persistence

feature/automation-profiles-and-resource-dag

feature/m1-plan-repo

feature/m1-db-plan-phase-rebaseline

feat/B4-sandbox

feat/B2-cli-wiring

feat/B5-project-persistence

feat/B1-project-data-models

feat/b1-data-models

feat-repo-manager-and-sourcegraph-support

feat/actor-schema

fix/component-isolation-security-fix

feat/ontology-agent

fix/error-handling-security-fix

fix/concurrency-security-fix

fix/serialization-security-fix

fix/server-side-request-forgery-security-fix

fix/file-system-security

fix/template-injection-fix

fix/data-injection-fix

tests/unit-tests

latest/poetry-generator

poetry-generator

config/contract-metadata-extractor

docs/readme-yaml-syntax

config/memory-yaml

fix/double-response

brent-additions

intel_2_demo

auto-working-v6

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#367 Epic: Multi-Agent RDF System

cleveragents/cleveragents-core

#3087 feat(acms): implement multi-agent RDF knowledge sharing — agent-scoped named graphs and cross-agent query federation

cleveragents/cleveragents-core

Depends on

#3082 feat: Transition issue #3082 to State/Verified

cleveragents/cleveragents-core

Reference

cleveragents/cleveragents-core#3086

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cleveragents/cleveragents-core

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