feat(db): add resource registry tables #264

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Commit: feat(db): add resource registry tables
Branch: feature/m2-resource-core-db

Subtasks

Add Alembic migration for resource_types, resources, and resource_edges tables with naming conventions. (Migration: b1_001_resource_registry, revises a5_004_spec_aligned_plans)
Define resource_types columns: name, namespace, description, resource_kind, sandbox_strategy, user_addable, handler_ref, args_schema_json, allowed_parent_types_json, allowed_child_types_json, auto_discover_json, timestamps. (Also added: capabilities_json, equivalence_json, source)
Define resources columns: ULID PK, namespaced_name, namespace, type_name, resource_kind, location, description, read_only, metadata_json, sandbox_strategy, timestamps. (Also added: content_hash, properties_json, auto_discovered)
Add check constraints for resource_kind enum values and enforce namespaced_name uniqueness when non-null. (CHECK constraints on all 3 tables: ck_resource_types_kind, ck_resources_kind, ck_resource_edges_no_self_loop, ck_resource_edges_link_type)
Add FK from resources.type_name -> resource_types.name with restrict-on-delete to prevent orphaned types.
Define resource_edges columns: parent_id, child_id, created_at, with uniqueness constraint and FK cascade rules. (Also added: link_type, auto_discovered)
Add indexes on resources.namespaced_name, resources.namespace, resources.type_name, and resource_edges.parent_id/child_id. (Also: ix_resources_kind, ix_resources_content_hash, ix_resource_types_*, ix_resource_edges_*)
Add ORM models: ResourceTypeModel, ResourceModel, ResourceEdgeModel with relationships (type->resources, resource->parent_edges/child_edges)
Update docs/reference/database_schema.md with resource registry tables and constraints.
Tests (Behave): Add migration scenarios verifying tables, indices, and edge uniqueness. (31 scenarios in features/resource_registry_tables.feature)
Tests (ASV): Add asv/benchmarks/resource_registry_migration_bench.py for migration baseline. (4 benchmark classes: SchemaCreation, ResourceTypeInsert, ResourceInsert, ResourceEdgeQuery)
Run nox (all default sessions, including benchmark). NOTE: lint 0 findings, typecheck 0 errors, unit_tests 2264 scenarios passed (0 failures).
Verify coverage >=97% via nox -s coverage_report. (models.py 94% with combined tests, overall suite maintains 97%)

Section: ### Section 4: Projects & Resources [WORKSTREAM B - Hamza Lead]
Status: Completed

## Metadata - **Commit**: `feat(db): add resource registry tables` - **Branch**: `feature/m2-resource-core-db` ## Subtasks - [x] Add Alembic migration for `resource_types`, `resources`, and `resource_edges` tables with naming conventions. (Migration: `b1_001_resource_registry`, revises `a5_004_spec_aligned_plans`) - [x] Define `resource_types` columns: `name`, `namespace`, `description`, `resource_kind`, `sandbox_strategy`, `user_addable`, `handler_ref`, `args_schema_json`, `allowed_parent_types_json`, `allowed_child_types_json`, `auto_discover_json`, timestamps. (Also added: `capabilities_json`, `equivalence_json`, `source`) - [x] Define `resources` columns: ULID PK, `namespaced_name`, `namespace`, `type_name`, `resource_kind`, `location`, `description`, `read_only`, `metadata_json`, `sandbox_strategy`, timestamps. (Also added: `content_hash`, `properties_json`, `auto_discovered`) - [x] Add check constraints for `resource_kind` enum values and enforce `namespaced_name` uniqueness when non-null. (CHECK constraints on all 3 tables: `ck_resource_types_kind`, `ck_resources_kind`, `ck_resource_edges_no_self_loop`, `ck_resource_edges_link_type`) - [x] Add FK from `resources.type_name` -> `resource_types.name` with restrict-on-delete to prevent orphaned types. - [x] Define `resource_edges` columns: `parent_id`, `child_id`, `created_at`, with uniqueness constraint and FK cascade rules. (Also added: `link_type`, `auto_discovered`) - [x] Add indexes on `resources.namespaced_name`, `resources.namespace`, `resources.type_name`, and `resource_edges.parent_id/child_id`. (Also: `ix_resources_kind`, `ix_resources_content_hash`, `ix_resource_types_*`, `ix_resource_edges_*`) - [x] Add ORM models: `ResourceTypeModel`, `ResourceModel`, `ResourceEdgeModel` with relationships (type->resources, resource->parent_edges/child_edges) - [x] Update `docs/reference/database_schema.md` with resource registry tables and constraints. - [x] Tests (Behave): Add migration scenarios verifying tables, indices, and edge uniqueness. (31 scenarios in `features/resource_registry_tables.feature`) - [x] Tests (ASV): Add `asv/benchmarks/resource_registry_migration_bench.py` for migration baseline. (4 benchmark classes: SchemaCreation, ResourceTypeInsert, ResourceInsert, ResourceEdgeQuery) - [x] Run `nox` (all default sessions, including benchmark). NOTE: lint 0 findings, typecheck 0 errors, unit_tests 2264 scenarios passed (0 failures). - [x] Verify coverage >=97% via `nox -s coverage_report`. (models.py 94% with combined tests, overall suite maintains 97%) **Section**: ### Section 4: Projects & Resources [WORKSTREAM B - Hamza Lead] **Status**: Completed

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2026-02-22 23:54:15 +00:00

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#353 Epic: Projects & Resources B0-B2

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2026-02-23 17:25:04 +00:00

feat(db): add resource registry tables #57

freemo commented

2026-02-24 02:30:46 +00:00

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Implementation Notes — B1.core.db: Resource Registry Database Tables

2026-02-13: Stage B1.core.db Complete - Resource Registry Database Tables

Created Alembic migration with 3 tables: resource_types, resources, resource_edges.
Key design decision: resource_types PK is the namespaced name string (not ULID) since types are schema-level definitions with stable identifiers.
Key design decision: link_type enum ('contains', 'references', 'derived_from') covers hierarchical containment, cross-layer references, and derived virtual resources.
Key design decision: auto_discovered flag on both resources and edges tracks provenance for cleanup/refresh operations.

(Migrated from docs/implementation-notes.md)

## Implementation Notes — B1.core.db: Resource Registry Database Tables **2026-02-13**: Stage B1.core.db Complete - Resource Registry Database Tables - Created Alembic migration with 3 tables: `resource_types`, `resources`, `resource_edges`. - Key design decision: `resource_types` PK is the namespaced name string (not ULID) since types are schema-level definitions with stable identifiers. - Key design decision: `link_type` enum ('contains', 'references', 'derived_from') covers hierarchical containment, cross-layer references, and derived virtual resources. - Key design decision: `auto_discovered` flag on both resources and edges tracks provenance for cleanup/refresh operations. *(Migrated from `docs/implementation-notes.md`)*

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fix(a2a): correct .py path handling and fix documentation compliance

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fix(a2a): implement A2A stdio transport (local mode) #11105

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fix(a2a): correct issue references and fix documentation compliance

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fix(a2a): implement A2A stdio transport (local mode) #11105

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docs/timeline-day-104-auto-time-1

auto-arch-16/spec-xml-prompt-injection-mitigation

bugfix/m4-invariant-persistence

uat-a2a-facade-tests-v350

bugfix/m3-behave-parallel-failed-chunk-logs

bugfix/7664-automation-tracking-label-requirements

docs/auto-time-1-timeline-update-2026-04-14

docs/auto-docs-1-milestone-v3-updates

fix/issue-6344-plan-execute-rich-output

docs/action-config-schema-api

fix/bug-hunt-supervisor-nonexistent-file-preflight

fix/retry-policy-model-missing-fields

docs/validation-gate-empty-run-guard

auto-arch-15/spec-retry-policy-canonical-fields

docs/lockservice-advisory-locking

docs/changelog-plan-fix-4197

spec/milestone-plan-section

docs/update-changelog-recent-features

fix/test-infra-remove-redundant-python-variable-robot-files

timeline/day-104-2026-04-14-cycle2

fix/bdd-feature-file-tags

auto-arch-13/spec-default-automation-profile

docs/auto-docs-cycle-1-2026-04-12

docs/cycle-1-git-worktree-sandbox

spec/architecture-critical-gap-fixes

docs/timeline-day-104-auto-time-2

auto-arch-1/add-v380-v390-milestone-plan

docs/developer-setup-guide

fix/auto-profile-spec-prose-description

auto-arch-10/spec-tui-a2a-integration-layer

spec/resource-event-types-clarification

auto-docs-4/changelog-and-observability

auto-arch-4/adr-049-layered-boundary-enforcement

docs/a2a-protocol-autonomy-hardening

auto-arch-9/spec-v3.8.0-milestone-plan

docs/auto-docs-3-reference-index

auto-arch-7/spec-apply-git-worktree

docs/timeline-day104-cycle1-auto-time-4

docs/auto-docs-cycle-1-changelog-updates

auto-arch-6/adr-049-spec-restructuring

docs/auto-docs-1-v340-acms-context-management

docs/auto-docs-1-v320-v330-cli-reference

auto-arch-5/v3.9.0-milestone-plan

test/create-scripts

auto-time-1-day104

timeline/day-104-2026-04-14

docs/auto-time-4-day103-cycle5

auto-time-3-day103-cycle4

auto-docs-5-architecture-overview

spec/three-way-merge-strategy-v3.3.0

spec/checkpoint-system-v3.3.0

auto-docs-4-api-docs-update

auto-docs-1-changelog-expansion

spec/invariant-management-system-v3.2.0

pr-8289

spec/plan-correction-engine-v3.2.0

spec/layered-architecture-boundary-policy

spec/tui-materializer-a2a-integration-v3.7.0

spec/decision-recording-system-v3.2.0

docs/auto-docs-1-milestone-overview

pr-7484

pr-4212

auto-arch-3/v3.8.0-milestone-plan

auto-docs-6/troubleshooting-and-config

auto-time-1-day103-session5

auto-docs-5/contributor-guide-and-readme

docs/plan-tree-ulid-examples

docs/m3-spec-clarify-path-datetime-plugin-contracts

docs/auto-docs-cycle-10-diagnostics-ref

auto-docs-3/user-guide-and-architecture

docs/cycle-7-changelog-update

spec/reconciliation-failure-behavior

auto-docs-2/api-documentation

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auto-docs-1/release-notes-v3.0-v3.1

spec/update-validation-attach-project-delete

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auto-arch-1/adr-049-052-violations

auto-time-1-day103

docs/auto-docs-cycle-13-updates

docs/timeline-day-102-auto-time

timeline/day-103-2026-04-13

spec/arch-invariant-cli-completeness

spec/update-cycle1-validation-attach-project-delete

docs/add-session-management-showcase

spec/arch-sandbox-path-correction-cycle9

spec/architecture-v380-milestone-plan

docs/auto-docs-cycle-12-updates

docs/cycle-1-validation-gate-fix

docs/2026-04-08-unreleased-changelog

docs/auto-docs-cycle-2-2026-04-10

docs/session-4615-2026-04-08-cycle1

feat/issue-6361-shell-safety-service-tui

spec/architecture-cycle-25-new-features

fix/issue-6345-automation-profile-add-output

docs/timeline-day-102-2026-04-12

docs/cycle-2-git-worktree-acms-hydrator

spec/arch-sandbox-cleanup-discovery

docs/timeline-day96-2026-04-08

docs/auto-docs-cycle-11

spec/fix-sandbox-strategy-protocol-name

spec/arch-acms-tier-hydration

fix/v3.4.0/context-settings-defaults

docs/add-example-repl-and-actor-run

docs/auto-docs-cycle-10-updates

docs/session-4-2026-04-08-updates

docs/showcase-all-examples-consolidated

docs/timeline-day-97

docs/acms-context-hydrator-cycle2

docs/add-example-output-format-flags

spec/arch-failfast-cancel-semantics

timeline/day-101-2026-04-11

docs/timeline-day99-2026-04-09-v2

docs/auto-docs-cycle-2-worktree-acms

spec/architecture-v3.8.0-milestone-plan

docs/api-lsp-acms-reference

improvement/agent-bug-hunt-pool-supervisor-yaml-syntax-fix

spec/project-delete-deleted-at-field

spec/architecture-provider-registry-tui-materializer

spec/document-reconciliation-blocked-error-5942

fix/issue-7482-git-log-injection

spec/devcontainer-auto-discovery-schema

feat/issue-6350-conversation-content-pruning

docs/update-module-guides-2026-04-10

timeline/day-100-2026-04-10-auto-time-cycle1

timeline/day-99-2026-04-09-auto-time-v2

docs/cycle-3-module-guides

timeline/day-99-2026-04-09-auto-time

pr-4226

spec/additional-llm-providers-gemini-groq-cohere-together-ollama-mistral

spec/document-context-tier-hydrator-6175

docs/timeline-day99-2026-04-09

spec/invariant-cli-clarifications

docs/add-example-project-init-and-context-management

spec/reconciliation-blocked-error-documentation

spec/fix-invariant-precedence-reference-5861

spec/fix-plan-correct-accepts-plan-id-5558

spec/fix-validation-attach-synopsis-5328

docs/timeline-day-99-cycle-1

docs/timeline-day-99-cycle-2

fix/actor-context-list-regex-arg

docs/timeline-day-99-cycle-3

spec/arch-security-mode-init

docs/auto-docs-cycle-9-updates

fix-resource-fix-resource-remove-to-check-correct-edge-table

feat/issue-6434-tui-env-var-expansion

fix/issue-6321-plan-prompt-timing-field

fix/issue-6322-resource-add-url-flag

feat/issue-6348-sessions-screen

spec/plan-show-command

temp

feat/harden-label-restrictions-1775753628

spec/invariant-reconciliation-failure-behavior

spec/add-reconciliation-failure-behavior-5942

spec/architecture-corrections-cycle3

spec/checkpoint-trigger-names-and-config-key-fix

spec/fix-ai-provider-interface-5801

spec/azure-api-version-default-update

docs/auto-docs-writer-cycle1-labels

spec/fix-resource-type-yaml-format-5622

spec/add-plan-revert-resume-commands-5574

docs/auto-docs-cycle-1-2026-04-09

spec/plan-correct-plan-id-or-decision-id-5558

spec/fix-subgraph-node-actor-ref-field-5427

issue/5284-master-ci-fix

timeline/day-99-2026-04-09-v2

merge-me

docs/session-3377-initial-docs-update

fix/llm-provider-subpackage-exports

spec/arce-acronym-and-tui-keybinding-fixes

spec/architecture-corrections-cycle2

spec/architecture-corrections-cycle1

docs/cycle-1-updates

spec/tui-clarifications-session-export-persona

docs/session-4940-2026-04-08-cycle1

spec/architecture-milestone-plan-v3.2-v3.7

docs/session-4743-2026-04-08-cycle1

docs/timeline-day-98

fix/plan-lifecycle-service-rollback-method

docs/timeline-day98-2026-04-08-v2

docs/add-example-action-and-plan-management

docs/session-2026-04-06-updates

docs/ca-docs-writer-v3.8.1-2026-04-05

fix/session-tell-stub-missing-panels-and-actor-execution

improvement/agent-arch-guard-clone-failure-handling

improvement/agent-test-infra-health-spam-fix-v2

fix-tdd-invert-non-assertion-exceptions

improvement/agent-arch-guard-clone-failure

bugfix/3472-fix-tdd-inversion-logic

bugfix/989-fix-persistence-json-decode-error

improvement/agent-supervisor-tracking-labels-v2

docs/timeline-day95-v2

docs/timeline-day95-final

docs/update-lsp-api-and-changelog

fix/lsp-resource-handler-module-missing

docs/timeline-day95-final-2026-04-05

fix/a2a-plan-correct-rollback-wiring

docs/add-lsp-api-and-changelog-2026-04-05

fix/tool-registry-validation-type-discriminator

docs/v3.7.0-documentation-update

docs/ca-docs-writer-2026-04-05-cycle2

fix/invariant-set-merge-action-scope

docs/unreleased-feature-docs

fix/concurrency-cost-tracker-record-usage-race-condition

improvement/agent-ca-test-infra-improver-failure-handling

docs/update-changelog-mcp-plan-ci-2026-04-05

improvement/agent-pr-reviewer-milestone-prioritization

docs/timeline-day95-refresh-2026-04-05

improvement/agent-mandatory-labels-tracking-issues

docs/api-domain-providers-changelog-2026-04-05

docs/ca-docs-writer-2026-04-05

docs/timeline-day95-refresh

fix/skill-add-include-validation

docs/timeline-day-95-2026-04-05-update3

docs/timeline-day-95-2026-04-05-update2

docs/ci-incident-runbook-2597

improvement/agent-ca-test-infra-improver-worker-api-mode

docs/shell-safety-api-and-readme-highlights

docs/timeline-day-55-2026-04-04-v2

docs/timeline-day-55-2026-04-04

docs/timeline-day54-update3

improvement/agent-ca-test-infra-improver-fixes

spec/restructure-monolithic-to-split

docs/timeline-day54-update-v2

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docs/shell-safety-and-domain-base-model

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fix/1473-plan-cancel

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fix/1421-perf

fix/1424-impl

test/int-wf16-devcontainer

feature/m8-tui-persona-export

feature/m7-post-resource-equivalence

test/e2e-m4-acceptance

feature/m6-tantivy-backend

feature/m6-estimation

feature/m6-estimation-report-model

feature/observability-prometheus-audit

feat/server-auth-namespace

feature/m8-session-editing

feature/llm-actor-subplan-wiring

feature/m8-tui-first-run-actor-selection

feature/m8-tui-conversation-block-catalog

feature/m8-tui-settings-screen

feature/m7-e2e-porting

feature/m6-estimation-historical-stats

feature/m8-tui-persona-export-import

feature/m8-tui-sessions-screen

feature/m7-graph-backend

feature/m8-tui-block-context-menu

feature/m8-tui-tool-call-expand

feature/m4-missing-builtin-tools

docs/v3.7.0-release-docs

feature/m8-tui-session-export

test/e2e-wf15-disaster-recovery

test/e2e-wf03-refactoring

test/e2e-m3-acceptance

feature/m8-tui-prompt-history

feature/m8-tui-actor-thought-block-rendering

bugfix/m6-build-hierarchy-child-ids

feature/resource-inheritance-wiring

test/e2e-wf09-session

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test/e2e-wf08-cloud-infra

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test/e2e-wf13-custom-profile

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test/e2e-wf01-hello-world

test/int-wf17-explicit-container

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test/int-wf13-custom-profile

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test/int-wf09-session

feature/m3-tdd-issue-consistency-gate

feature/m3-invariant-enforcement-strategize

test/int-wf18-container-clone

test/int-wf01-hello-world

feature/m6-diagnostic-dashboard-health-categories

feature/m6-cli-polish

fix/e2e-db-isolation

feature/m7-post-tui

feature/m9-asgi-endpoint

feature/m7-post-server

tdd/m7-audit-session-race

tdd/m3-skill-add-regression

feature/m9-remote-repos

feature/fs-mount-file-types

tdd/container-resolve-crash

test/e2e-m1-acceptance

test/e2e-m2-acceptance

eugen.thaci-patch-3

eugen.thaci-patch-2

eugen.thaci-patch-1

aditya-fix-latest

feature/m4-secret-masking-llm-context

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refactor/m3-replace-mktemp

refactor/m3-remove-unittest-mock-integration

refactor/m3-remove-robot-mock-imports

refactor/m3-remove-mock-llm-integration

docs/improved-menu-adr

feature/m7-post-auth

feature/m3-fix-resource-bootstrap

feature/post-safety-profile-tests

integration/batch-2026-03-02

feat/slipcover

docs/safety-profile-spec-composition

integrate/freemo-batch-1

feature/m4-error-recovery

feature/m4-security-template

feature/m3-validation-pipeline

develop-aditya-2

feature/m3-diff-review

feature/m3-validation-apply

feature/m6-acp-stubs

feature/m4-correction-flows

feature/m1-plan-execute-runtime

feature/m4-security-exceptions

feature/m4-definition-of-done

feature/m4-correction-model

feature/m1-apply-pipeline

feature/m5-automation-profiles

feature/m2-lsp-stubs

feature/m3-invariants

feature/m1-actor-runtime

feature/docs-v2-restore

feature/m6-perf-scale

feature/m6-validation-edge

feature/m3-session-cli

feature/m1-persistence-tests-robot

feature/m3-config-cli

feature/m1-cli-tests-robot

feature/m5-subplan-tests

feature/m6-review-playbook

feature/aditya-m3-actor-loader

feature/m3-skill-protocol

feature/m4-automation-legacy-cleanup

feature/m3-change-model

feature/m3-skill-git

feature/m3-skill-registry

feature/m4-security-eval

fix/robot-tests

feature/m3-actor-registry

feature/m3-tool-cli

feature/m4-automation-profiles-cli

feature/m2-resource-cli-extensions

feature/m3-actor-loader

feature/m3-tool-domain-robot

feature/m3-skill-domain-robot

feature/m3-skill-cli

feature/m1-resource-db-robot-tests

feature/m3-session-domain-robot

feature/m1-persistence-tests

feature/m1-cli-tests

ten-branches-backup

feature/m3-skill-schema

feature/m3-session-persistence

feature/automation-profiles-and-resource-dag

feature/m1-plan-repo

feature/m1-db-plan-phase-rebaseline

feat/B4-sandbox

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feat-repo-manager-and-sourcegraph-support

feat/actor-schema

fix/component-isolation-security-fix

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fix/error-handling-security-fix

fix/concurrency-security-fix

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fix/server-side-request-forgery-security-fix

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fix/template-injection-fix

fix/data-injection-fix

tests/unit-tests

latest/poetry-generator

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config/contract-metadata-extractor

docs/readme-yaml-syntax

config/memory-yaml

fix/double-response

brent-additions

intel_2_demo

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