 aditya
|
e60c3eab13
|
fix: fix ruff check errors as per review feedback
|
2026-02-05 18:39:14 +05:30 |
|
|
aditya
|
87443596ee
|
test: copy pasted the existing behave bdd test
|
2026-02-05 18:36:56 +05:30 |
|
|
aditya
|
3a38af25a7
|
fix: fix hardcoded A:Z column range in Google Sheets tracker
|
2026-01-30 16:39:03 +05:30 |
|
|
aditya
|
e2ddbd58a0
|
fix: fix minor bugs; add multiprocessing for ttl format datasets
|
2026-01-21 20:06:49 +05:30 |
|
|
aditya
|
02c9f12aee
|
fix: fix resume functionality in .ttl fomat dataset
|
2026-01-21 20:02:33 +05:30 |
|
|
aditya
|
cb25f4dea1
|
fix: fix xml:base not getting added with subject; implement checkpoint in google sheet
|
2026-01-16 18:25:04 +05:30 |
|
|
aditya
|
001e3d3f4f
|
fix: implement multithreading for parsing of description and skip parsing of description
|
2026-01-16 18:20:13 +05:30 |
|
|
aditya
|
53fcbbbb04
|
feat: integrate google sheet tracker in rdf_to_hf_incremental.py
|
2026-01-14 19:47:05 +05:30 |
|
|
aditya
|
c21be4fe14
|
fix: fix sheet updation logic; update README.md for pycharm devcontainer
|
2026-01-14 19:33:01 +05:30 |
|
|
aditya
|
42cadec23f
|
fix: fix issues as per review feedback
|
2026-01-14 19:33:01 +05:30 |
|
|
aditya
|
91900c6a6b
|
fix: fix push to hub in unified converter script
|
2026-01-14 19:33:00 +05:30 |
|
|
aditya
|
b11910103a
|
feat: integrate excel integration using gcp
|
2026-01-14 19:32:56 +05:30 |
|
|
aditya
|
b696d86835
|
fix: fix minor decompressed_byte bug
|
2026-01-14 18:14:11 +05:30 |
|
|
aditya
|
255ccad4d4
|
fix: some minor fixes
|
2026-01-13 17:19:54 +05:30 |
|
|
aditya
|
9ccdd38e91
|
fix: parse xml file with xml.etree.ElementTree; fix ruff and pyright errors
|
2026-01-13 17:19:50 +05:30 |
|
|
aditya
|
6ff2719a8e
|
feat: add streaming of rdf xml dataset with resume functionality
|
2026-01-13 17:18:09 +05:30 |
|
 brent.edwards
|
b9f69317ab
|
Slightly made rdf_to_hf_incremental.py a little easier to test.
|
2026-01-09 17:26:04 -08:00 |
|
|
brent.edwards
|
a508e8c349
|
ruff check now passes everything in scripts.
|
2026-01-09 15:17:32 -08:00 |
|
|
brent.edwards
|
8329e7dd2c
|
Minor changes to remove unused variables.
|
2026-01-08 16:48:06 -08:00 |
|
|
brent.edwards
|
18a146faad
|
Changes made first by Aider, then by me. Aider was too slow.
|
2026-01-08 16:42:56 -08:00 |
|
|
brent.edwards
|
21c9acb4bf
|
style: break long f-string into multiple lines for readability
Co-authored-by: aider (openrouter/openai/o3-mini-high) <aider@aider.chat>
|
2026-01-08 16:00:54 -08:00 |
|
|
brent.edwards
|
8921dc31ca
|
style: remove trailing whitespace in docstring
Co-authored-by: aider (openrouter/openai/o3-mini-high) <aider@aider.chat>
|
2026-01-08 16:00:04 -08:00 |
|
|
brent.edwards
|
c3fcd5adb1
|
fix: remove trailing whitespace in docstring
Co-authored-by: aider (openrouter/openai/o3-mini-high) <aider@aider.chat>
|
2026-01-08 15:59:14 -08:00 |
|
|
brent.edwards
|
c120b2b793
|
style: break long docstring line for readability
Co-authored-by: aider (openrouter/openai/o3-mini-high) <aider@aider.chat>
|
2026-01-08 15:58:14 -08:00 |
|
|
brent.edwards
|
6f4d9af488
|
style: break docstring lines to adhere to 88-character limit
Co-authored-by: aider (openrouter/openai/o3-mini-high) <aider@aider.chat>
|
2026-01-08 15:56:34 -08:00 |
|
|
brent.edwards
|
72d4b9a9ba
|
refactor: remove unused variable and simplify exception handling
|
2026-01-08 15:45:11 -08:00 |
|
|
brent.edwards
|
f8a7739016
|
Minor changes.
|
2025-12-30 18:06:34 -08:00 |
|
|
aditya
|
2b1537d4f9
|
fix: fix ruff check errors
|
2025-12-29 18:49:57 +05:30 |
|
|
aditya
|
90d77a7077
|
fix: fix chunksize argument in multiprocessing as per review
|
2025-12-29 18:47:22 +05:30 |
|
|
brent.edwards
|
e7a540aeb3
|
More work toward pyright approval.
|
2025-12-28 17:13:34 -08:00 |
|
|
brent.edwards
|
1d33b67198
|
A few minor fixes.
|
2025-12-26 18:49:33 -08:00 |
|
|
aditya
|
1bb26305ce
|
fix: fix path too long issue; fix pickling issue in unified converter script
|
2025-12-26 18:21:02 +05:30 |
|
|
aditya
|
5b215aff76
|
fix: complete the unified script to add add the new features as streaming parallel; update the upload_all_dataset.py to use the unified script
|
2025-12-24 21:00:32 +05:30 |
|
|
brent.edwards
|
02f740ab81
|
Moved the new unified code.
|
2025-12-23 17:51:11 -08:00 |
|
|
aditya
|
bbc0d61039
|
Merge branch '7-dockerfile-setup' into stream-download-convert-upload
|
2025-12-23 20:52:17 +05:30 |
|
|
aditya
|
d564739f72
|
Merge branch '35-xz-compression' into stream-download-convert-upload
|
2025-12-23 20:20:36 +05:30 |
|
|
aditya
|
d5ac95f2aa
|
feat: add --list --dry-run dataset card feature
|
2025-12-23 19:31:53 +05:30 |
|
|
aditya
|
711ee61f9a
|
fix: Address code review feedback - deduplication, format support, and error handling improvements
|
2025-12-23 19:28:21 +05:30 |
|
|
brent.edwards
|
2ea6f3a89e
|
Added all appropriate files from https://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/
|
2025-12-22 18:46:29 -08:00 |
|
|
brent.edwards
|
a51f1f3703
|
Fixing dataset_config to download one file.
|
2025-12-22 17:13:28 -08:00 |
|
|
brent.edwards
|
16fd345664
|
Added dataset_config.
|
2025-12-22 16:12:45 -08:00 |
|
|
aditya
|
b218ab1410
|
feat: add rdf_to_hf_incremental.py script for true streamingof entire pipeline
|
2025-12-19 20:20:51 +05:30 |
|
|
brent.edwards
|
ff3939d937
|
fix: improve RDF format detection and parsing for UniProt dataset
Co-authored-by: aider (openrouter/anthropic/claude-sonnet-4) <aider@aider.chat>
|
2025-12-16 19:38:30 -08:00 |
|
|
brent.edwards
|
1df9fcbdf6
|
Merge branch '35-xz-compression-aider' into 35-xz-compression
|
2025-12-16 18:22:37 -08:00 |
|
|
brent.edwards
|
0784e3e275
|
Fixes suggested by Aider.
|
2025-12-16 18:21:25 -08:00 |
|
|
brent.edwards
|
757d6dd7f8
|
fix: update error message for missing xz command
Co-authored-by: aider (openrouter/openai/o3-mini-high) <aider@aider.chat>
|
2025-12-16 18:08:30 -08:00 |
|
|
brent.edwards
|
e0b0836ffc
|
fix: correct xz decompression command and update error messages
Co-authored-by: aider (openrouter/openai/o3-mini-high) <aider@aider.chat>
|
2025-12-16 18:07:58 -08:00 |
|
|
brent.edwards
|
6f12a78c2c
|
Fixing dataset_config to download one file.
|
2025-12-16 14:06:52 -08:00 |
|
|
brent.edwards
|
8bef6986ea
|
Added .xz compression to code.
|
2025-12-16 14:00:06 -08:00 |
|
|
aditya
|
0a9e8da028
|
fix: add hugging face push_to_hub()to upload the dataset directly to hugging face
|
2025-12-15 19:31:10 +05:30 |
|