Move alembic configuration and migration files from repository root into the Python package structure to ensure they are included in the wheel distribution. This fix resolves the FileNotFoundError when running `agents init` in Docker containers or any environment using the built wheel distribution. Changes: - Move alembic/ directory from repo root to src/cleveragents/infrastructure/database/migrations/ - Move alembic.ini to the same new location and update script_location setting - Update MigrationRunner._find_alembic_ini() to search from the new canonical location within the package - Update create_template_db.py to point to the new alembic.ini location - Update documentation references to reflect new migration file locations - Create __init__.py for migrations package - The env.py file is imported when running tests that verify all modules can be imported without errors. However, context.config is only available when alembic is actually running migrations, not during normal module imports. This caused an AttributeError when the test tried to import the migrations.env module. - Fix by using getattr() with a default value to safely access context.config, and guard all code that uses config with None checks. This allows the module to be safely imported while still functioning correctly during migrations. Testing: - Verified MigrationRunner can locate alembic.ini in new location - Tested agents init succeeds in creating project with database - Template database creation works correctly - All migration tests should pass without changes Alembic files now follow standard Python packaging conventions, making them automatically included in wheel distributions without special configuration. ISSUES CLOSED: #4180
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Review Playbook & Priority Matrix
This document provides a comprehensive guide for conducting code reviews on the CleverAgents project. It covers focus areas, skip rules, severity classification, SLA targets, checklists, reviewer routing, and examples of acceptable versus blocking findings.
Focus Areas and Skip Rules
What to Review Carefully
| Area | Reason |
|---|---|
Domain model changes (src/cleveragents/domain/) |
Core business logic; regressions break everything |
Database migrations (src/cleveragents/infrastructure/database/migrations/) |
Irreversible in production; data loss risk |
| Security-sensitive code (auth, secrets, server stubs) | Direct attack surface |
CLI entry points (src/cleveragents/cli/) |
User-facing; breaking changes affect all users |
| Public API contracts (schemas, configs) | Backward-compatibility obligations |
| Infrastructure persistence layer | Data integrity and query correctness |
What to Skim
| Area | Reason |
|---|---|
| Auto-generated reference docs | Machine output; verify build passes instead |
Benchmark result files (build/asv/) |
Ephemeral artifacts; review the benchmark code not results |
Lock files (uv.lock, poetry.lock) |
Verify no unexpected additions; do not read line-by-line |
| Changelog entries | Quick factual check only |
Whitelist files (vulture_whitelist.py) |
Verify entries match real symbols; no deep review |
Priority Matrix
Findings are classified into four severity levels. Every review comment must include a severity tag so the author can triage efficiently.
| Severity | Label | Merge Policy | Examples |
|---|---|---|---|
| P0 – Critical | P0:blocker |
Must fix before merge | Security vulnerability, data loss risk, broken migration, credential leak |
| P1 – High | P1:must-fix |
Must fix before merge | Logic bug in domain layer, missing error handling on public API, type unsafety |
| P2 – Medium | P2:should-fix |
Fix in follow-up PR (within 3 days) | Missing docstring on public function, suboptimal query, minor code duplication |
| P3 – Low | P3:nit |
Optional; author discretion | Style preference, naming bikeshed, TODO placement |
Escalation Rules
- Any P0 finding → request a second reviewer before merge.
- Two or more P1 findings in the same subsystem → escalate to the subsystem owner (see routing table below).
- If a PR has only P2 and P3 findings, the reviewer may approve with comments and the author can address them in a follow-up.
Review SLA Guidance
| PR Size | Target First Response | Target Approval/Request Changes |
|---|---|---|
| S (< 100 lines changed) | 4 hours | 8 hours |
| M (100–400 lines changed) | 8 hours | 24 hours |
| L (400–1000 lines changed) | 24 hours | 48 hours |
| XL (> 1000 lines changed) | 48 hours | 72 hours |
Note: XL PRs should be rare. If a PR exceeds 1000 lines, consider splitting it into smaller, reviewable chunks.
Checklist Templates
Architecture Review Checklist
Use this checklist for PRs that modify domain models, services, or introduce new subsystems.
- Domain model invariants are preserved
- No circular dependencies between modules
- New abstractions have clear single responsibility
- Public interfaces are documented with docstrings
- Type annotations are complete (no
Anyunless justified) - Unit of Work boundaries are respected
- Repository pattern is followed for persistence
- No business logic in infrastructure layer
- Error types are domain-specific (not generic
Exception) - Changes are backward-compatible or migration path is documented
CLI Review Checklist
Use this checklist for PRs that add or modify CLI commands.
- Command help text is clear and complete
- Exit codes follow conventions (0 = success, 1 = error)
- Output format is consistent with existing commands
--format jsonoutput is parseable- Error messages are user-friendly (no raw tracebacks)
- New commands are registered in the CLI group
- Tab completion works for new options
- Streaming output handles interrupts gracefully
- Commands are tested in behave scenarios
DB Migration Review Checklist
Use this checklist for PRs that add or modify Alembic migrations.
- Migration has both
upgrade()anddowngrade()functions downgrade()is actually tested (not just apass)- No data-destructive operations without explicit confirmation
- Index additions use
IF NOT EXISTSguard - Column renames include data migration step
- Foreign key constraints are correct
- Migration chain is linear (no branch conflicts)
- Performance impact on large tables is documented
- Rollback procedure is documented in PR description
Security-Sensitive Change Checklists
Secrets and Credentials
- No secrets, API keys, or tokens in source code
- Secrets are loaded from environment variables or config files
.gitignorecovers any new secret file patterns- No secrets logged at any log level
- Credential rotation procedure is documented
Authentication and Authorization
- Auth checks cannot be bypassed via parameter manipulation
- Session handling follows secure defaults
- Token expiry is enforced
- Failed auth attempts are logged (without leaking credentials)
- No privilege escalation paths
Server Stubs and API Endpoints
- Input validation on all user-supplied data
- Rate limiting is configured
- CORS policy is restrictive
- Error responses do not leak internal details
- All endpoints require authentication unless explicitly public
Schema Migrations (Security)
- No raw SQL with string interpolation
- Migration does not grant excessive permissions
- Audit columns (
created_at,updated_at) are preserved - PII columns use appropriate encryption or hashing
- Backup procedure is documented for destructive changes
PR Review Routing Table
This table defines the primary and secondary reviewers for each subsystem. When opening a PR, assign the primary reviewer. If the primary is unavailable within the SLA window, assign the secondary.
| Subsystem | Path Pattern | Primary Reviewer | Secondary Reviewer | Review Type |
|---|---|---|---|---|
| Domain models & services | src/cleveragents/domain/ |
Luis | Jeff | Architecture review |
| Persistence & repositories | src/cleveragents/infrastructure/persistence/ |
Luis | Hamza | Architecture review |
| CLI core commands | src/cleveragents/cli/ |
Jeff | Brent | CLI review |
| CLI tests | features/*cli*, robot/*cli* |
Brent | Rui | CLI review |
| Behave tests & fixtures | features/, features/steps/ |
Brent | Rui | Test review |
| Robot tests & helpers | robot/ |
Brent | Rui | Test review |
| DB migrations | src/cleveragents/infrastructure/database/migrations/ |
Hamza | Luis | DB migration review |
| Actor/Skill/Tool configs | src/cleveragents/*/actor*, src/cleveragents/*/skill*, src/cleveragents/*/tool* |
Aditya | Jeff | Architecture review |
| MCP adapter | src/cleveragents/infrastructure/mcp/ |
Aditya | Jeff | Architecture review |
| Security changes | **/security*, **/auth*, **/secrets* |
Jeff | Brent | Security review |
| CI/CD changes | .forgejo/, noxfile.py, pyproject.toml |
Brent | Jeff | CI review |
| Documentation | docs/ |
Brent | Rui | Docs review |
| Resource registry | src/cleveragents/*/resource* |
Hamza | Luis | Architecture review |
| Decision/validation pipelines | src/cleveragents/*/decision*, src/cleveragents/*/validation* |
Luis | Jeff | Architecture review |
Acceptable vs Blocking Findings
Acceptable Findings (P2–P3)
These findings should be noted but do not block merge.
Example 1 – Naming nit (P3)
# Reviewer comment: P3:nit – Consider renaming `proc` to `process` for clarity.
def start_proc(config: Config) -> None:
...
Remediation: Author may rename in a follow-up or leave as-is with justification.
Example 2 – Missing docstring (P2)
# Reviewer comment: P2:should-fix – Public function missing docstring.
def calculate_priority(task: Task) -> int:
return task.weight * task.urgency
Remediation: Author opens a follow-up PR within 3 days to add docstrings to all public functions in the module.
Example 3 – Minor duplication (P2)
# Reviewer comment: P2:should-fix – This validation logic is duplicated in
# action_service.py:45. Consider extracting to a shared helper.
Remediation: Author creates a tech-debt ticket and addresses in the next sprint.
Blocking Findings (P0–P1)
These findings must be resolved before merge.
Example 1 – SQL injection (P0)
# Reviewer comment: P0:blocker – Raw SQL with string interpolation.
# Use parameterized queries.
query = f"SELECT * FROM users WHERE name = '{user_input}'"
Remediation: Replace with parameterized query:
session.execute(text("SELECT * FROM users WHERE name = :name"), {"name": user_input})
Example 2 – Missing error handling (P1)
# Reviewer comment: P1:must-fix – FileNotFoundError not caught.
# CLI will show raw traceback to user.
def load_config(path: str) -> Config:
with open(path) as f:
return Config.parse(f.read())
Remediation: Wrap in try/except and raise a domain-specific error:
def load_config(path: str) -> Config: try: with open(path) as f: return Config.parse(f.read()) except FileNotFoundError: raise ConfigNotFoundError(f"Config file not found: {path}")
Example 3 – Broken migration (P0)
# Reviewer comment: P0:blocker – downgrade() is empty. This migration
# cannot be rolled back.
def downgrade() -> None:
pass
Remediation: Implement the reverse operation in
downgrade()or document why rollback is intentionally unsupported.
Required Test Matrix for Reviewers
Before approving any PR, reviewers must verify that the following nox sessions pass. The author should include CI results or local run output in the PR description.
| Nox Session | Purpose | Required For |
|---|---|---|
nox -s lint |
Ruff linting | All PRs |
nox -s typecheck |
Pyright type checking | All PRs |
nox -s unit_tests |
Behave BDD unit tests | All PRs |
nox -s integration_tests |
Integration test suite | PRs touching domain/infra |
nox -s coverage_report |
Coverage check (≥97%) | All PRs |
nox -s security_scan |
Bandit + Semgrep + Vulture | All PRs |
nox -s dead_code |
Vulture dead code detection | PRs adding new code |
nox -s complexity |
Radon complexity analysis | PRs adding new functions |
nox -s benchmark |
ASV benchmark suite | PRs affecting performance |
Minimum Gate for Merge
A PR may only be merged if all of the following are true:
nox -s lintpasses with zero warningsnox -s typecheckpasses with zero errorsnox -s unit_testspasses with zero failuresnox -s coverage_reportshows ≥97% coveragenox -s security_scanreports zero high/critical findings- At least one reviewer has approved
- All P0 and P1 findings are resolved