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Implementation Plan

CleverAgents Implementation Plan

CRITICAL: Execute These Rules Without Exception

Strictly adhere to guidelines in ./CONTRIBUTING.md: All rules and guidelines outlined in this file must be strictly followed at all times.
Python implementation scope only: Every action described here pertains to building an idiomatic Python codebase that implements the CleverAgents architecture.
NO BACKWARDS COMPATIBILITY: CleverAgents is a NEW standalone project. Do NOT maintain any backwards compatibility. No migration guides, no compatibility shims, no support for old configurations or data.
Living document protocol: After finishing each checklist item (and its testing sub-items), immediately append every decision, discovery, open question, or deviation to this document under the matching Notes section. This plan remains the authoritative record.
Single documentation surface: Do not create auxiliary notes elsewhere unless explicitly required. All architectural updates, troubleshooting outcomes, and contextual knowledge must flow back into this markdown file.
Sequential discipline: Always begin with the first unchecked item in the checklist. Do not progress until that item, its documentation update, and its testing sub-items (including any spawned remediation tasks) are fully resolved.
USE MODERN PYTHON TOOLING: This is a cutting-edge Python project that must use modern build tools and workflows. NO Makefiles, NO legacy approaches, NO helper scripts. Use Hatch exclusively for project management, nox for task automation, pyproject.toml for all configuration. Commands should be Python-native (e.g., hatch env create, nox -s test) not shell scripts or make targets. All tooling must be from the current Python ecosystem (2024+). When current tooling (such as "Behave" and "Robot Framework") can be used to solve a problem, use them rather than adding new tooling, keep it simple. NO wrapper scripts - use tools directly as designed.
Unit + integration + asv testing mandate: For every coding task, author or update must include asv (airspeed velocity) performance, unit and integration tests, run them, and achieve passing results before marking the task complete. Testing subtasks are non-optional.
Behavior-driven testing stack: Use Behave feature suites under features/ for unit-level and scenario tests and Robot Framework suites under robot/ for integration and end-to-end coverage. Keep both synchronized with the code under test and document all updates in this plan.
Do not use pytest style unit tests: Under no circumstances should you write pytest styled unit tests, all unit tests should be Behave based (as noted in the last bullet point), which follows the Cucumber/Gherkin style of tests as seen under features/, this is why there is intentionally no tests/ folder.
Test execution via nox: Run every unit, integration, Behave, Robot, and benchmark suite exclusively through the designated nox sessions (e.g., nox -s unit_tests, nox -s integration_tests). Do not invoke behave, robot, or similar runners directly; if a nox session is missing required tooling, add the dependency to the session before rerunning.
Failure capture: Any Behave or Robot failure instantly spawns a new unchecked sub-item under the same step titled Fix – <short failure summary>. Document the failure context in the Notes section and resolve it before moving forward.
Traceability requirement: When a decision impacts future work, reference the relevant functions or modules in the Notes section using the file_path:line_number pattern for fast navigation.
unit tests coverage above 97% at all times: unit test coverage must remain above 97% at all times. Unit tests can be run with nox -e unit_tests and is run as part of the default test suite run with nox.
must be statically typed: All code at all times must use statically typed typing and must pass the static check run with nox -e typecheck which is run as part of the default test suite with nox. Under no circumstances at no point should you ignore type checking, this means never turn it off in the config files, and never use inline comments to force an type checking error to be suppressed.
Use existing tooling: Always prefer nox sessions over raw commands, Behave for unit tests over new frameworks, Robot for integration tests, Hatch for dependency management.
Mock placement rule: ALL mocks, test doubles, and mock implementations MUST exist only in features/ directory. Production code in src/ and utility scripts in scripts/ must NEVER contain mock implementations, test data, or conditional testing behavior. Use dependency injection to swap implementations during tests.
CRITICAL - Implementation Checklist Separation: The "Implementation Checklist" section MUST always remain separate and be the LAST section of this document. All development notes, design decisions, progress updates, technical details, and discoveries belong in their respective phase Notes sections (e.g., Phase 0 Notes, Phase 1 Notes, Phase 2 Notes) which appear BEFORE the Implementation Checklist. Never add content after the checklist section. The checklist is for tracking what needs to be done; the Notes sections are for documenting what was done and how.

CONTINUOUS CHECKLIST AND KNOWLEDGE STEWARDSHIP (MANDATORY)

Immediate documentation loop: After completing any amount of work toward a checklist item, append the newly discovered information, assumptions, implementation notes, and open questions to this document before proceeding. No discovery, decision, or workaround may remain undocumented.
Dynamic checklist maintenance: Before marking an item complete—or returning from work in progress—review all remaining checklist entries. Update their descriptions, add clarifying subtasks, and insert new entries capturing follow-on tasks, bug fixes, or future enhancements uncovered during implementation. Place new items in the phase where the work logically belongs (current or future) and note cross-phase dependencies.
Implementation traceability: Record substantive code decisions (design pattern choices, module ownership, testing strategy, risk mitigations) back into the corresponding Notes section and checklist subtasks immediately after each coding/testing session.
Checklist integrity: Never remove checklist items unless they are explicitly retired with documented reasoning. Mark completed work by checking the item(s) and append new tasks or restructuring bullets only when required—preserve original wording for historical traceability.
Enforcement: Treat omissions as blocking bugs—if the plan falls out of sync with reality, halt work, reconcile the discrepancy here, and only then continue.

CleverAgents Vision

CleverAgents is your command center for AI agents—a unified platform for orchestrating any task you want agents to accomplish, from developing large software projects to writing comprehensive technical papers, administering databases, managing cloud infrastructure, or any complex multi-step workflow. The core value proposition is enabling long-running, complex, large-scale tasks to execute autonomously with minimal human intervention, making it ideal for building entire software systems, producing extensive documentation, or managing sophisticated operations largely hands-off.

When connected to a CleverAgents server (developed independently), the client becomes a gateway to a collaborative hub where teams can share resources—prompts, actors, actions, and projects—while executing plans on the server. This enables a consistent experience across all your devices: start a complex task on your laptop, check progress from your phone, and review results from any machine. Note: The server is a separate project; this implementation plan covers the client only.

While CleverAgents leverages LangGraph and LangChain for the underlying LLM runtime primitives (tool calling, graphs, routing), its value lies in what it builds on top:

CleverAgents provides:
- A first-class plan lifecycle (Action/Strategize/Execute/Apply) for breaking down and tracking complex work,
- A project + resource model for grounding tasks in real codebases, databases, documents, and infrastructure,
- A consistent actor abstraction for defining and composing intelligent agents,
- A consistent skill abstraction for anything an agent can execute,
- A sandbox + checkpoint safety model for safe, reversible execution,
- A CLI/TUI/Web UX for controlling and monitoring large multi-step autonomous work.

Key Concepts

Concept	Definition
Plan	A tracked lifecycle for a single unit-of-work (which may spawn subplans). Phases: Action -> Strategize -> Execute -> Apply
Action	A reusable plan template. Created via CLI commands (NOT YAML files).
Actor	Anything conversational; may be a single agent/LLM or an entire graph. Defined via YAML configuration files. Always named `<namespace>/<name>`.
Project	A collection of resources + configuration. Created via CLI commands (NOT YAML files).
Resource	Anything that can be read/written/queried. Each resource defines its own sandbox strategy.
Skill	A callable capability defined inline in actor YAML as tool nodes.
Namespace	Scoping mechanism: `local/`, `<username>/`, `<orgname>/`, or provider namespaces (`openai/`, `anthropic/`).
Decision	A recorded choice point made during Strategize that affects downstream work. Forms a tree enabling correction and replay.

Objectives and Guiding Principles

Ship a Python-based, feature-complete application named CleverAgents implementing the four-phase plan lifecycle with actors, projects, resources, and sandbox-based execution.
Implement functionality using Pythonic architecture: dependency inversion, strategy, adapter, observer, state, builder, factory, template method, event sourcing, and decorator patterns where appropriate.
Build a unified Python executable (agents) that operates as a client-only application, supporting stand-alone local-only mode or connecting to an independently developed server for multi-user deployments.
Enforce fail-fast error handling, rich logging, and comprehensive type coverage with docstrings and runtime validation aligned to Python best practices.
Provide a pluggable ORM abstraction supporting heavy (PostgreSQL/MySQL) and lightweight (SQLite/DuckDB/in-memory) backends, with zero-code configuration switches.
Generate fresh documentation via MkDocs (Material for MkDocs) integrated within the docs/ directory of the CleverAgents project.

Core Architectural Requirements

Scalability: The system must handle massive codebases (50,000+ files) through:

Three-tier memory architecture (hot/warm/cold)
Hierarchical task decomposition
Bounded dependency closures
Lazy resource sandboxing

Reliability: Prevent cascading failures through:

Complete execution isolation via sandboxes
Multi-layer semantic error prevention
Checkpoint-based rollback capabilities
Invariant enforcement throughout execution

Autonomy with Control: Progressive automation through:

Three-level automation system (manual, review-before-apply, full)
Decision correction without full re-execution
Confidence-based escalation
Semantic understanding of when human input is needed

Continuous Testing and Documentation Policy

Do not mark any parent checklist item complete until all subordinate Code, Document, Tests tasks and any generated Fix – … tasks are resolved and the associated Notes section has the latest context.
Every time new information appears, extend the corresponding Notes section immediately with explicit references to code locations and decisions.
Maintain a running catalog of Behave commands, Robot suites, fixtures, and environments in the Notes sections to assist subsequent contributors.
Expand the nested Code/Document/Tests sub-bullets with newly discovered tasks as implementation advances so the plan always mirrors ground truth.

Completion Criteria

The implementation concludes only when every checklist item and spawned remediation task is checked, all Notes sections contain final decisions and references, and the full Behave and Robot test suites (unit, integration, end-to-end, benchmarking, packaging, documentation) pass without outstanding failures.

Architecture Overview

Plan Lifecycle Phases

Action -> Strategize -> Execute -> Apply -> Applied (terminal)

Current Phase	Command Verb	Next Phase
(none)	`create`	Action
Action	`use`	Strategize
Strategize	`execute`	Execute
Execute	`apply`	Applied

Plan States (Per Phase)

Action phase states: available, draft, archived

Strategize / Execute / Apply phase states: queued, processing, errored, complete, cancelled

Key Architectural Components

Multi-tier Memory System:

Hot tier: Immediate working context in LLM context window
Warm tier: Recent decisions and contexts from current plan tree
Cold tier: Historical decisions from past plans, queryable but not in active memory
Context snapshots with cryptographic hashes preserve complete decision context

Dependency Closure Computation:

Resource-aware analysis during Strategize
Hierarchical scoping with explicit resource lists
Lazy expansion prevents closure explosion
Interface-based boundaries for modular changes

Execution Coordination:

Complete isolation via per-plan sandboxes
Resource-specific sandbox strategies (git worktrees, transactions, etc.)
Hierarchical merge resolution
Checkpoint-based coordination for rollback

Semantic Error Prevention:

Decision-time validation during Strategize
Execution-time semantic guards in actors
Invariant enforcement throughout
Pattern-based predictive error prevention

Namespace Rules

Namespace	Scope	Storage
`local/`	Current machine only	Local database
`<username>/`	Personal server namespace	Server database
`<orgname>/`	Organization namespace	Server database
`openai/`, `anthropic/`, etc.	Built-in LLM actors	N/A (built-in)

Configuration Philosophy

Actions: Created via CLI commands (agents [--data-dir PATH] [--config-path PATH] action create --config <file> ...)
Projects: Created via CLI commands (agents [--data-dir PATH] [--config-path PATH] project create ...)
Actors: Defined via YAML configuration files (the ONLY YAML configuration)
Resources: Registered via agents resource add, then linked via agents project link-resource

Environment Variables for Testing

All environment variables needed during testing are stored in the .env file in the project root. This file contains API keys and tokens for various LLM providers and services. When implementing provider integrations or any features that require external services, use the environment variable names from this file or add new ones following the same pattern.

Current Environment Variables

Variable Name	Service	Usage
`OPENROUTER_API_KEY`	OpenRouter	Access to multiple LLM models through OpenRouter API
`OPENAI_API_KEY`	OpenAI	Direct access to OpenAI models (GPT-3.5, GPT-4, etc.)
`ANTHROPIC_API_KEY`	Anthropic	Access to Claude models
`GOOGLE_API_KEY`	Google AI	Access to Google's API for web searches
`GEMINI_API_KEY`	Google Gemini	Access to Google's Gemini models
`HF_TOKEN`	Hugging Face	Access to Hugging Face models and datasets

Development Log

This section will be updated with notes about each phase/task as they are implemented as well as forward looking remarks or insights.

Phase 0: Discovery and Requirements Elaboration (Python Tooling)

Status: [X] COMPLETE

All core Phase 0 discovery tasks have been successfully completed. See the Phase 0 section in the Implementation Checklist for detailed completion records.

Phase 0 Notes

2025-11-01: Implemented CLI inventory extraction tools, server endpoint extraction, data contract extraction, shell asset extraction
2025-11-02: Implemented environment variable extraction and implicit behavior extraction tools
2025-11-04: Completed workflow parity matrix generator and cloud features identification
All discovery artifacts stored in docs/reference/

Phase 1: Target Architecture Definition

Status: [X] COMPLETE

All 10 ADRs have been created and package structure established. See the Phase 1 section in the Implementation Checklist for detailed completion records.

Phase 1 Notes

2025-11-04: Completed all 10 Architecture Decision Records
2025-11-05: Package structure created based on ADR-001
All ADRs documented in docs/architecture/decisions/
2026-02-11: CLI syntax updated to spec-aligned forms (action create via --config, plan use positional args, project create positional). Legacy --name/--project examples retained in historical notes only.

2026-02-11: Action config YAML baseline (spec-aligned):

name: local/example-action
description: Example action for CLI flows
strategy_actor: openai/gpt-4
execution_actor: openai/gpt-4
definition_of_done: "All steps complete"

Phase 2: Runtime Foundation (Completed Work)

Status: Substantially Complete - Transitioning to new Architecture

The following work from the previous implementation has been completed and will be preserved/adapted:

Completed Infrastructure

LangChain/LangGraph dependencies and integration (ADR-011)
PlanGenerationGraph, ContextAnalysisAgent, AutoDebugGraph workflows
Memory service with EntityMemory
SQLite persistence with Alembic migrations
CLI streaming integration
Provider adapters (OpenAI, Anthropic, Google, OpenRouter)
Actor configuration system (Stage 7.5)
Test coverage at 95%

Phase 2 Notes (Preserved from Previous Work)

2025-11-22: Week 12 Complete, Phase 2 Core Functionality DONE

CLI Streaming Integration fully implemented
AutoDebugGraph Implementation complete
Mock provider enhancements with configurable failure modes
Infrastructure improvements (DebugAttempt model, repositories)
2026-02-11: CLI syntax refreshed to spec-aligned forms in current execution sections; legacy --name/--project examples retained only in historical notes.

2025-12-05: LangSmith observability integration complete 2025-12-08: Actor-first provider wiring complete 2025-12-17: Stage 7 performance optimization complete 2026-02-02: Stage 7.5 Actor Configuration System complete 2026-02-05: Stage A1 & A2 Complete - Plan and Action Domain Models

Created src/cleveragents/domain/models/core/plan.py with:
- PlanPhase enum (ACTION, STRATEGIZE, EXECUTE, APPLY, APPLIED)
- ActionState enum (AVAILABLE, DRAFT, ARCHIVED)
- ProcessingState enum (QUEUED, PROCESSING, ERRORED, COMPLETE, CANCELLED)
- NamespacedName model with parse() and str() methods
- PlanIdentity model with ULID validation
- Plan model with full lifecycle support
- can_transition() function for phase transition validation
Created src/cleveragents/domain/models/core/action.py with:
- ActionArgument model with parse() method for CLI argument parsing
- Action model with strategy/execution actor references
- Argument validation including type checking
Added 52 Behave test scenarios across 2 feature files:
- features/plan_model.feature (30 scenarios)
- features/action_model.feature (22 scenarios)
All new tests pass, existing tests unaffected

2026-02-05: Stage A3 Complete - PlanLifecycleService

Created src/cleveragents/application/services/plan_lifecycle_service.py with:
- Full plan lifecycle management (Action -> Strategize -> Execute -> Apply -> Applied)
- Action CRUD operations (create, get, list, make_available, archive)
- Plan creation via use_action() which transitions Action to Strategize
- Phase transition methods: execute_plan(), apply_plan()
- State management: start_*(), complete_*(), fail_*() for each phase
- cancel_plan() for non-terminal plans
- Custom exceptions: InvalidPhaseTransitionError, ActionNotAvailableError, PlanNotReadyError
- In-memory storage (to be replaced with persistence in Stage A5)
Added python-ulid dependency for ULID generation
Added 29 Behave test scenarios in features/plan_lifecycle_service.feature
Total new test scenarios: 81 (30 + 22 + 29)

2026-02-05: Stage A4 In Progress - Plan CLI Commands

Created src/cleveragents/cli/commands/action.py with:
- agents [--data-dir PATH] [--config-path PATH] action create - Create new action with strategy/execution actors, definition of done, arguments
- agents [--data-dir PATH] [--config-path PATH] action list - List actions with filtering by namespace, state
- agents [--data-dir PATH] [--config-path PATH] action show - Show action details by ID or name
- agents [--data-dir PATH] [--config-path PATH] action available - Make draft action available for use
- agents [--data-dir PATH] [--config-path PATH] action archive - Archive an action (soft delete)
Extended src/cleveragents/cli/commands/plan.py with v3 lifecycle commands:
- agents [--data-dir PATH] [--config-path PATH] plan use <action> <project> - Use action to create plan in Strategize phase (legacy --project retained in old notes)
- agents [--data-dir PATH] [--config-path PATH] plan execute [plan_id] - Transition plan from Strategize to Execute
- agents [--data-dir PATH] [--config-path PATH] plan apply [plan_id] - Transition plan from Execute to Apply
- agents [--data-dir PATH] [--config-path PATH] plan status [plan_id] - Show v3 plan status and details
- agents [--data-dir PATH] [--config-path PATH] plan list [--phase <phase>] [--state <state>] [--project <project>] [--action <action>] - List v3 lifecycle plans with filtering
- agents [--data-dir PATH] [--config-path PATH] plan cancel <plan_id> - Cancel a non-terminal plan
Registered action commands in CLI main.py
Added 15 Behave test scenarios in features/action_cli.feature
Total test scenarios: 96 (81 + 15)

2026-02-06: CRITICAL ARCHITECTURAL DECISION - Tool-Based Resource Modification

REPLACED: OutputParser/code fence parsing approach
WITH: Tool-based change tracking (modern approach used by Claude Code, Cursor, Aider)
Key changes:
- LLMs call skills/tools directly (edit_file, write_file, delete_file, etc.)
- Skills operate on sandbox state directly
- ChangeSet is built from skill invocation history, NOT by parsing LLM text output
Added built-in resource skills (now C4.file/C4.search/C4.git): file ops, dir ops, search, git ops
Added MCP skill adapter (now C7.mcp): connect to external MCP servers
- Replaced C4 "Multi-File ChangeSet Generation" with "Tool-Based Change Tracking"
- Added SkillInvocationTracker and ToolCallRouter components
Rationale:
- No parsing ambiguity (is this code or explanation?)
- Each operation is explicit, typed, and trackable
- Supports rollback (replay inverse of recorded changes)
- Resource-agnostic (works for files, databases, APIs, any resource type)
- Compatible with MCP standard for external tools
See docs/specification.md sections:
- "Tool-Based Resource Modification (Modern Architecture)"
- "Unified Resource Abstraction Layer"
- "MCP Integration Architecture"

Implementation Roadmap

Milestone Overview

Milestone	Target Date	Description
M0: Foundation	Day 0 (Current)	Existing LangGraph infrastructure preserved
M1: Minimal Plan Lifecycle	+7 days	Basic Action -> Strategize -> Execute -> Apply working for source code
M2: Projects & Resources	+10 days	Project/Resource CLI commands, local filesystem sandbox
M3: Actors & Skills	+14 days	YAML actor loading, skill execution, multi-file generation
M4: Decision Tree	+21 days	Decision recording during Strategize, basic correction
M5: Multi-Project & Subplans	+25 days	Subplan spawning, parallel execution
M6: Large Project Autonomy	+30 days	Handle 10K+ file projects, decision correction, deep subplan hierarchies (LOCAL MODE ONLY)
M7: Server Connectivity	+35+ days	Client-server communication for remote project support (server developed independently)
M8: Full Feature Set	+40 days	All spec features complete

Critical Path to 7-Day MVP (Source Code Only)

WEEK 1 GOAL: A minimally usable application that can:

Create an action from CLI
Use the action on a source code project
Execute with sandbox isolation
Generate multi-file changes
Apply changes after review

CRITICAL PATH (Sequential):
Day 1: A5 Plan/Action Persistence + Action Arguments (Luis)
Day 2: B1.core + B2.service/B3.cli Project/Resource models + CLI (Hamza)
Day 3: B4.sandbox Git worktree sandbox (Luis + Hamza)
Day 4: C1.schema/C1.examples + C2.legacy + C2.loader/C2.compiler Actor schema + compilation (Aditya + Jeff)
Day 5: C3.protocol/C3.context/C3.inline + C4.file Skill framework + file skills (Jeff)
Day 6: C4.search/C4.git + C5.model/C5.router/C5.diff Change tracking + tool routing (Luis + Jeff)
Day 7: C6.pipeline/C6.gating + C7.mcp + C8.providers + C9.execute/C9.apply Plan-actor integration + validation (Aditya + Jeff + Luis)
Day 8: End-to-end Integration & Testing (All)

Parallel Workstreams

WORKSTREAM A: Plan Lifecycle & Persistence [Luis - Lead Architect]
├── Plan/Action database persistence
├── Phase transitions with database
├── Plan state machine completion
└── CLI integration with persistence

WORKSTREAM B: Projects & Resources [Hamza - RDF Expert]
├── B1.core domain models (resource types, resources, projects)
├── B2.persistence tables + repositories + services
├── B3.cli resource type/resource/project commands
└── B4.sandbox strategies (git_worktree + copy_on_write stub)

WORKSTREAM C: Actors & Skills [Aditya - Domain Expert]
├── Actor YAML schema formalization
├── Hierarchical actor configurations
├── Skill execution framework
├── Built-in resource skills (file ops, dir ops, search, git)
├── MCP skill adapter for external servers
├── Actor-to-LangGraph compilation
└── Built-in provider actors

WORKSTREAM D: Tool-Based Change Tracking [Luis + Rui]
├── ChangeSet model enhancement
├── Skill invocation tracking
├── Tool call routing (OpenAI/Anthropic/LangChain)
├── Validation pipeline
└── Diff review artifacts

WORKSTREAM Q: Quality Automation & Infrastructure [Brent - Detail Oriented]
├── Automated quality gate setup (Days 1-3)
├── Continuous quality monitoring (Days 4-30)
├── Documentation automation (Continuous)
└── Transition to high-impact work after Day 8

MERGE POINT 1: After Day 7 (M1)
- Plan->Actor binding verified
- Resource->Context flow working
- Skill->Tool mapping complete

MERGE POINT 2: After Day 14 (M3)
- Full plan lifecycle tested
- Actor compilation working
- Multi-file generation proven

MERGE POINT 3: After Day 30 (M6 - Large Project Autonomy)
- Decision tree correction working
- Large project handling verified (10K+ files)
- Deep subplan hierarchies operational (5+ levels)
- Server connectivity deferred (client-only stubs; no server implementation)

Quick Reference for Development

Tool Commands

# Development setup
pip install -e .[dev,tests,docs]    # Install with all extras
hatch env create                     # Create virtual environment
hatch shell                          # Activate environment

# Testing
nox                                  # Run all tests
nox -s unit_tests                    # Run Behave tests only
nox -s integration_tests             # Run Robot tests only
nox -s coverage_report               # Check coverage (must be >=97%)

# Code quality
nox -s format                        # Format with Ruff
nox -s lint                          # Lint with Ruff
nox -s typecheck                     # Type check with pyright

# Documentation
nox -s docs                          # Build documentation

Key Files and Their Purpose

pyproject.toml - All project configuration (no setup.py, no requirements.txt)
noxfile.py - All task automation (no Makefile, no scripts/)
features/ - Behave unit tests (no tests/ directory)
robot/ - Robot integration tests
docs/reference/ - Discovery artifacts from Phase 0
docs/architecture/decisions/ - ADRs from Phase 1

Environment Variables (CLEVERAGENTS_* only)

# Core configuration
CLEVERAGENTS_HOME=~/.cleveragents
CLEVERAGENTS_LOG_LEVEL=INFO
CLEVERAGENTS_API_KEY=<your-key>

# Development
CLEVERAGENTS_DEBUG=true
CLEVERAGENTS_TEST_MODE=true

Schedule Adhereance

2026-02-12 (Day 2 since kickoff on 2026-02-11)

Milestone calendar (relative): Day 7/M1 = 2026-02-18, Day 10/M2 = 2026-02-21, Day 14/M3 = 2026-02-25, Day 21/M4 = 2026-03-04, Day 25/M5 = 2026-03-08, Day 30/M6 = 2026-03-13, Day 35/M7 = 2026-03-18.
Current baseline vs spec: action model still states CLI-only (not YAML), PlanLifecycleService is in-memory, plan CLI still contains legacy tell/build/apply paths, and legacy DB models (projects, plans, changes) remain; these are blockers for M1 persistence + CLI alignment.
Schedule variance: A2b/A4b/A5 + B1/B2/C0 are still open on Day 2, leaving ~5 days to M1; we are ~2-3 days behind the critical path unless persistence + resources + tool registry start in parallel today.
Variance snapshot (Day 2): Week 1 now explicitly allocates Rui for test scaffolds alongside Jeff/Luis/Hamza; this increases parallel test throughput but does not change the critical path for A2b/A4b/A5/B1.
Sequencing confirmation (Day 2-6): A2b.alpha + A2b.beta -> A4b.alpha -> A4b.beta -> A5.alpha -> A5.beta/A5.gamma -> A5.legacy; B1.core + C0.domain run in parallel; B1/C0 DB migrations must rebase after A5.alpha head; A4b.alpha can scaffold in parallel but only merges after A2b.alpha/beta/gamma.
Day 2-6 allocation (compressed): Day 2 Jeff starts A2b.alpha + A5.alpha + A4b.alpha scaffolding; Hamza starts B1.core + built-in types; Luis starts A5.beta; Aditya starts C1.schema/examples; Rui starts A2b/A4b/A5/B1 test scaffolds; Brent lands Q0-Minimum. Day 3-4: Jeff finishes A2b.alpha + A4b.alpha and advances A5.alpha; Hamza finishes B1.core and starts B2.persistence; Luis completes A5.beta and starts A5.gamma; Aditya continues C1; Rui grows suites. Day 5-6: Jeff closes A5.alpha + A4b.alpha polish, prepares A5.legacy; Luis completes A5.gamma DI; Hamza advances B2.service; Rui aligns A4b.beta tests and runs nox.
Staffing assumptions confirmed (Day 8-14): Jeff leads C9 execute/apply, Hamza owns D1/D2 decisions, Luis owns E1 subplans, Aditya owns E2.actor, Rui handles test scaffolds, Brent runs QA gates.
Risk: Alembic head contention between A5.alpha/B1/C0 increases rebase churn; mitigation is to rebase before merge and keep a single linear Alembic head.
Risk: A4b CLI alignment may drift from A2b domain updates; mitigation is to lock CLI outputs and keep A4b.beta tests tied to exact fields.
Risk: Coverage/nox gates can stall merges as suites grow; mitigation is daily nox runs and early flaky-test isolation.
Risk: Resource/tool registry schema drift can block project/skill wiring; mitigation is to finalize YAML schemas before persistence wiring.
Risk: Large-project performance (M6) may slip if context indexing or decomposition is slow; mitigation is to run ASV benchmarks by Day 22 and enforce file/token thresholds.
Micro-schedule (Days 1-40, block-level):

Days 1-7

Day/Block	Jeff	Luis	Hamza	Aditya	Rui	Brent	Gate
Day 1 AM	A5.alpha migration draft	A5.beta ORM plan	B1.core models prep	C1 schema prep	A5 test scaffolds	Q0-Minimum hooks	A5.alpha draft
Day 1 PM	A5.alpha finalize	A5.beta ORM models	B1.core models	C1 schema start	A5 migration tests	Q0-Minimum CI	A5.alpha commit 1
Day 2 AM	A2b.alpha core fields + A5.alpha-1 draft	A5.beta mapping plan	B1.core resource_type model	C1.schema start	A2b/A4b test scaffolds	Q0-Minimum hooks	A2b.alpha draft ready
Day 2 PM	A4b.alpha scaffolding + A5.alpha-1 finalize	A5.beta ORM models	B1.core built-in types	C1.examples start	A5 migration tests	Q0-Minimum CI	B1.core commit ready
Day 3 AM	A5.alpha-2/3 migrations	A5.gamma repo	B2.persistence draft	C1.schema finalize	A4b tests	Q0-Minimum coverage	A5.alpha commits 1-2
Day 3 PM	A2b.alpha finalize + A4b.alpha main	A5.gamma service	B2.persistence finalize	C1.examples finalize	Robot smoke scaffolds	nox gates	A2b.alpha commit
Day 4 AM	A4b.alpha finalize	A5.gamma DI wiring	B2.service start	C2.loader prep	A4b.beta tests	Q0-Minimum signoff	A4b.alpha commit
Day 4 PM	A5.alpha-4 finalize	A5.gamma tests	B2.service	C2.loader start	A5 tests	nox gates	A5.alpha complete
Day 5 AM	A5.legacy prep + C0.domain start	A5.gamma finalize	B3.cli prep	C2.loader	A4b.beta finalize	QA review	A5.gamma commit
Day 5 PM	A5.legacy commit	A5.gamma DI polish	B3.cli start	C2.loader	Run nox	QA review	A5.legacy ready
Day 6 AM	C0.domain finalize	A5.gamma DI merge	B3.cli	C2.loader	A4b.beta robot	QA signoff	C0.domain commit
Day 6 PM	Merge/rebase window	Fixes	B3.cli tests	C2.compiler handoff	Full nox	QA signoff	M1 delta clear
Day 7 AM	C5.diff prep	C6.pipeline prep	B3.cli tests	C2.compiler handoff	C5/C6 test scaffolds	QA check	M1 delta close
Day 7 PM	M1 buffer + polish	M1 buffer + polish	M1 buffer + polish	C2.compiler handoff	Full nox	QA signoff	M1 verified

Days 8-14

Day/Block	Jeff	Luis	Hamza	Aditya	Rui	Brent	Gate
Day 8 AM	C9.execute wiring	C9.execute support	Prep D1 fixtures	C8.providers configs	C8/C9 test scaffolds	QA check	Execute phase draft
Day 8 PM	C9.execute finalize	C9.apply prep	D1.domain prep	C8.providers finalize	C9 execute tests	QA check	C8 + C9.execute ready
Day 9 AM	C9.apply implementation	C9.apply implementation	D1.domain start	Support C8 docs	C9.apply tests	QA check	Apply flow draft
Day 9 PM	C9.apply finalize	Apply review	D1.domain continue	Provider actor polish	Apply robot + nox	QA signoff	Apply flow ready
Day 10 AM	D1 review	D1 support	D1.domain model	Support D1 fixtures	D1 test scaffolds	QA check	Decision model draft
Day 10 PM	D1 review	D1 support	D1 tests + docs + nox	D1 examples polish	D1 Robot/ASV	QA signoff	D1 commit
Day 11 AM	D2 review	D2 support	D2.service record	D2 fixtures	D2 test scaffolds	QA check	Decision recording draft
Day 11 PM	D2 review	D2 support	D2 tests + nox	D2 examples	D2 Robot/ASV	QA signoff	D2 commit
Day 12 AM	E1 review	E1.domain model	E1 fixtures	E2.actor prep	E1 test scaffolds	QA check	E1 draft
Day 12 PM	E1 review	E1 tests + docs + nox	E1 fixtures	E2.actor prep	E1 Robot/ASV	QA signoff	E1 commit
Day 13 AM	E2.service	E2.service support	E2 fixtures	E2.actor tool	E2 test scaffolds	QA check	E2 draft
Day 13 PM	E2.service tests + nox	E2 support	E2 fixtures	E2.actor tests + nox	E2 Robot/ASV	QA signoff	E2 commit
Day 14 AM	Integration triage	Integration support	Integration support	Integration support	Full Robot + Behave	QA signoff	M3 test pass
Day 14 PM	Release candidate	Release candidate	Release candidate	Release candidate	Full nox	QA signoff	M3 verified

Days 15-21

Day/Block	Jeff	Luis	Hamza	Aditya	Rui	Brent	Gate
Day 15 AM	D5 review	D5 support	D5.db migration	Prep D5 fixtures	D5 test scaffolds	QA check	D5.db draft
Day 15 PM	D5 review	D5 support	D5.repo implementation	D5 docs polish	D5 Robot/ASV	QA signoff	D5.db/repo commit
Day 16 AM	D3.cli review	D3.cli support	D3.cli implementation	D3 fixtures	D3 test scaffolds	QA check	D3.cli draft
Day 16 PM	D3.cli review	D3.cli support	D3.cli tests + nox	D3 examples	D3 Robot/ASV	QA signoff	D3.cli commit
Day 17 AM	D4.revert implementation	D4 support	D4 fixtures	D4 docs polish	D4 test scaffolds	QA check	D4.revert draft
Day 17 PM	D4.revert tests + nox	D4 support	D4 fixtures	D4 examples	D4 Robot/ASV	QA signoff	D4.revert commit
Day 18 AM	D4.append implementation	D5.di support	D5.di wiring	D4/D5 fixtures	D4 append tests	QA check	D4.append draft
Day 18 PM	D4.append tests + nox	D5.di support	D5.di tests + nox	D5 docs polish	D5 Robot/ASV	QA signoff	D4.append + D5.di commits
Day 19 AM	E3.exec review	E3.exec implementation	E3 fixtures	E3 docs polish	E3 test scaffolds	QA check	E3.exec draft
Day 19 PM	E3.exec tests + nox	E3.exec support	E3 fixtures	E3 examples	E3 Robot/ASV	QA signoff	E3.exec commit
Day 20 AM	E4.merge implementation	E4.merge support	E4 fixtures	E4 docs polish	E4 test scaffolds	QA check	E4.merge draft
Day 20 PM	E4.merge tests + nox	E4.merge support	E4 fixtures	E4 examples	E4 Robot/ASV	QA signoff	E4.merge commit
Day 21 AM	Integration triage	Integration support	Integration support	Integration support	Full Robot + Behave	QA signoff	M4 test pass
Day 21 PM	Release candidate	Release candidate	Release candidate	Release candidate	Full nox	QA signoff	M4 verified

Days 22-30

Day/Block	Jeff	Luis	Hamza	Aditya	Rui	Brent	Gate
Day 22 AM	G1 review	G3.semantic prep	CTX1.index implementation	CTX1 fixtures	CTX1 test scaffolds	QA check	CTX1 draft
Day 22 PM	G1 review	G3.semantic prep	CTX1 tests + nox	CTX1 docs polish	CTX1 Robot/ASV	QA signoff	CTX1 commit
Day 23 AM	G1 review	G3.semantic implementation	CTX1 index tune	CTX1 fixtures	G3 test scaffolds	QA check	G3 draft
Day 23 PM	G1 review	G3 tests + nox	CTX1 finalize	CTX1 docs	G3 Robot/ASV	QA signoff	G3 commit
Day 24 AM	G1 review	G2.checkpoint prep	G4.context implementation	G4 fixtures	G4 test scaffolds	QA check	G4 draft
Day 24 PM	G1 review	G2.checkpoint prep	G4 tests + nox	G4 docs polish	G4 Robot/ASV	QA signoff	G4 commit
Day 25 AM	G1 review	G2.checkpoint implementation	G4 context tune	G4 fixtures	G2 test scaffolds	QA check	G2 draft
Day 25 PM	G1 review	G2 tests + nox	G4 finalize	G4 docs	G2 Robot/ASV	QA signoff	G2 commit
Day 26 AM	G1.decompose implementation	G3.semantic tuning	G5.estimate prep	G5 fixtures	G1 test scaffolds	QA check	G1 draft
Day 26 PM	G1.decompose tests + nox	G3.semantic support	G5.estimate prep	G5 docs polish	G1 Robot/ASV	QA signoff	G1 commit
Day 27 AM	G1 performance	G3.semantic performance	G5.estimate implementation	G5 fixtures	G5 test scaffolds	QA check	G5 draft
Day 27 PM	G1 performance	G3.semantic support	G5 tests + nox	G5 docs	G5 Robot/ASV	QA signoff	G5 commit
Day 28 AM	F0.stubs review	F0.stubs implementation	Integration support	F0 fixtures	F0 test scaffolds	QA check	F0 draft
Day 28 PM	F0.stubs review	F0 tests + nox	Integration support	F0 docs polish	F0 Robot/ASV	QA signoff	F0 commit
Day 29 AM	M6 perf triage	Perf tuning	Perf tuning	Perf fixtures	Perf tests	QA check	Perf draft
Day 29 PM	M6 perf triage	Perf tuning	Perf tuning	Perf docs	Full Robot/ASV	QA signoff	Perf ready
Day 30 AM	Integration triage	Integration support	Integration support	Integration support	Full Robot + Behave	QA signoff	M6 test pass
Day 30 PM	Release candidate	Release candidate	Release candidate	Release candidate	Full nox	QA signoff	M6 verified

Days 31-35

Day/Block	Jeff	Luis	Hamza	Aditya	Rui	Brent	Gate
Day 31 AM	F1 review	F1.client implementation	F4.remote prep	F1 fixtures	F1 test scaffolds	QA check	F1 draft
Day 31 PM	F1 review	F1 tests + nox	F4.remote prep	F1 docs polish	F1 Robot/ASV	QA signoff	F1 commit
Day 32 AM	F1 review	F1.client finalize	F4.remote prep	F1 fixtures	F1 test scaffolds	QA check	F1 finalize
Day 32 PM	F2 sync review	F2.sync implementation	F4.remote prep	F2 fixtures	F2 Robot/ASV	QA signoff	F2 draft
Day 33 AM	F2 sync review	F2 tests + nox	F4.remote implementation	F2 docs polish	F2 test scaffolds	QA check	F2 commit
Day 33 PM	F3.ws review	F3.ws implementation	F4.remote implementation	F3 fixtures	F3 Robot/ASV	QA signoff	F3 draft
Day 34 AM	F3.ws review	F3 tests + nox	F4.remote tests + nox	F3 docs polish	F3 test scaffolds	QA check	F3 commit
Day 34 PM	F4.remote review	F4.remote tests + nox	F4.remote finalize	F4 docs polish	F4 Robot/ASV	QA signoff	F4 commit
Day 35 AM	Integration triage	Integration support	Integration support	Integration support	Full Robot + Behave	QA signoff	M7 test pass
Day 35 PM	Release candidate	Release candidate	Release candidate	Release candidate	Full nox	QA signoff	M7 verified

Days 36-40

Day/Block	Jeff	Luis	Hamza	Aditya	Rui	Brent	Gate
Day 36 AM	A6.core/A6.service review	A6.service implementation	A6.cli support	A6 examples	A6 test scaffolds	QA check	A6 draft
Day 36 PM	A6.core/A6.service tests + nox	A6.service support	A6.cli tests + nox	A6 docs polish	A6 Robot/ASV	QA signoff	A6 commit
Day 37 AM	G5.estimate review	G5.estimate support	G5.estimate implementation	G5 fixtures	G5 test scaffolds	QA check	G5 draft
Day 37 PM	G5.estimate tests + nox	G5.estimate support	G5.estimate tests + nox	G5 docs polish	G5 Robot/ASV	QA signoff	G5 commit
Day 38 AM	G2.checkpoint review	G2.checkpoint implementation	G2 fixtures	G2 docs polish	G2 test scaffolds	QA check	G2 draft
Day 38 PM	G2.checkpoint tests + nox	G2.checkpoint support	G2 fixtures	G2 docs	G2 Robot/ASV	QA signoff	G2 commit
Day 39 AM	G1.decompose tuning	G3.semantic tuning	Perf fixtures	Perf docs	Perf tests	QA check	Perf draft
Day 39 PM	G1.decompose tests + nox	G3.semantic tests + nox	Perf fixtures	Perf docs	Perf Robot/ASV	QA signoff	Perf ready
Day 40 AM	Integration triage	Integration support	Integration support	Integration support	Full Robot + Behave	QA signoff	M8 test pass
Day 40 PM	Release candidate	Release candidate	Release candidate	Release candidate	Full nox	QA signoff	M8 verified

Parallelism focus: Jeff to drive A2b/A4b/A5.legacy + C0.domain; Luis to start A5.beta/A5.gamma; Hamza to start B1.core + B2.persistence; Aditya to start C1 schema/examples; Rui to start test scaffolding for A2b/A4b/A5/B1; Brent to land Q0-Minimum gates.
Individual status: Jeff (critical path unblocker, heavy load), Luis (persistence architecture), Hamza (resource registry + project model), Aditya (actor YAML/configs), Rui (Behave/Robot/ASV scaffolding), Brent (nox/coverage/CI gates), Mike/Brian (idle/standby).

Implementation Checklist

This comprehensive checklist tracks all implementation tasks for the CleverAgents project. Each phase item includes mandatory Code, Document, and Tests bullets. Only mark the parent complete when every sub-bullet (including any spawned Fix – … remediation tasks) is checked.

Organization: This checklist is organized to enable parallel development and achieve a minimally working version as quickly as possible. Workstreams are clearly marked. Dependencies between workstreams are noted at merge points.

Execute all required tests through the appropriate nox sessions—never call behave, robot, or other runners directly. After touching any subtask, immediately add discoveries to the Notes section and update task descriptions.

Commit Ownership Rule: Each COMMIT item has exactly one owner. Every subtask (Code/Docs/Tests/Quality/Commit) must list that same owner in brackets. If a subtask truly requires a different owner, split it into a separate COMMIT item under the appropriate parallel group.

Updated Team Assignments (by Expertise)

Developer	Strengths	Assignment Focus	Availability
Jeff	CTO, fastest developer, expert in everything	Critical path blockers, architecture, complex integrations, decision correction, unblocking others	PRIMARY - Available for all critical work
Aditya	Domain expert (agents/LLMs), understands hierarchical configs	Actor YAML configurations, hierarchical actor graphs, strategy/execution actors, MCP integration	HIGH - Primary on actor/skill work
Rui	Fastest developer, new to Python	Testing (Behave/Robot), simple implementations, CLI scaffolding, test fixtures	HIGH - Parallel testing track
Brent	Slow but detail-oriented	Days 1-3: Automated quality gates setup; Days 4-8: Selective review; After Day 8: Validation testing	CONTINUOUS - Independent QA track
Hamza	RDF expert, Python proficient, no LLM experience	Projects, resources, sandbox, database infrastructure, decision models, context indexing	HIGH - Infrastructure lead
Luis	Best Python architect, pedantic	Algorithms, state machines, service layer architecture, change tracking, validation pipelines	HIGH - Architecture/service layer
Mike/Brian	Sysadmins	Deployment only (minimal coding tasks)	LOW - Only deployment tasks

Work Assignment Philosophy

Jeff should be assigned to:

Any task that is blocking other developers
Complex integrations requiring deep architectural understanding
Decision correction mechanism (critical for 30-day goal)
Skill execution framework (core to MVP)
Performance-critical code paths
Final review of all architectural decisions

Jeff's Critical Path Task Summary (Day-by-Day)

Day	Task IDs	Description	Blocks
Day 1	A5.alpha, A5.action_arguments	Plan/Action DB schema (incl. action args)	Luis (A5.beta), All downstream
Day 2	A5.gamma	Service integration + DI wiring	CLI integration (A4 tests)
Day 3	A5.legacy, B3.cleanup, C3.protocol	Remove legacy plan/project CLI + skill protocol	All skill implementations
Day 4	C3.context, C3.inline, C2.legacy	SkillContext + inline executor + v2 actor cleanup	Luis (C5.model)
Day 5	C4.file	File operation skills	Change tracking tests
Day 6	C4.search, C4.git	Search + git skills	Actor compilation (C2.compiler)
Day 7	C6.gating, C9.execute, C9.apply	Plan-actor integration + validation	MVP verification
Day 8	M1.1-M1.10	MVP merge point coordination	Release v0.1.0-rc1
Day 15-16	D4.revert	Correction Service core algorithm	Decision correction
Day 17	D4.append	Append correction mode	Re-execution
Day 18	D5.di	Decision wiring + re-exec	M4 milestone
Day 19	D5.di	Unblock E3 parallelism	Luis (E3)
Day 20-21	E3	Parallel execution fine-tuning	Subplan merging
Day 22-25	Deep subplan hierarchies	5+ level subplan testing	M6
Day 26-28	Performance optimization	10K+ file codebase support	Large project autonomy
Day 30	M6.1-M6.10	Large project merge point	Release v0.3.0

BLOCKING CHAIN: If Jeff is unavailable, the following chains stall:

A5.alpha → A5.beta → A5.gamma → Plan persistence (Day 1-2)
C3.protocol → C3.context → C4.file → Skill execution (Day 3-6)
D4.revert → D4.append → Decision correction (Day 15-18)

Aditya should be assigned to:

ALL actor configuration YAML files and examples
Hierarchical actor graph compositions
Strategy and execution actor templates
MCP skill adapter implementation
Skill metadata definitions
Anything requiring understanding of LLM tool calling patterns

Luis should be assigned to:

State machine implementations (plan lifecycle, phase transitions)
Repository pattern implementations
Service layer architecture
Algorithm design (merge strategies, dependency closure)
Validation pipeline orchestration
Should NOT be assigned to simple CRUD or UI work

Hamza should be assigned to:

Database schema design and Alembic migrations
Resource model and sandbox infrastructure
Context indexing and RDF graph store integration
Decision tree persistence layer
Session management
Should NOT be assigned to LLM/agent-specific logic

Rui should be assigned to:

ALL Behave test scenarios (write BEFORE implementation)
Robot integration tests
Simple CLI scaffolding
Test fixtures and mocks in features/
Should ALWAYS work in parallel with feature developers

Brent should be assigned to:

Days 1-3: Setting up comprehensive automated quality gates
Days 4-8: Selective manual review of high-priority items only
After Day 8: High-impact validation and edge case testing with Luis
Continuous: Monitoring automated quality metrics
Should work INDEPENDENTLY with no blocking dependencies

Updated Timeline Targets

Milestone	Day	Goal	Success Criteria
M1: MVP	Day 7	Create action → Use on project → Execute with sandbox → Apply changes (source code only)	`agents [--data-dir PATH] [--config-path PATH] action create --config` + `agents [--data-dir PATH] [--config-path PATH] plan use <action> <project>` + `agents [--data-dir PATH] [--config-path PATH] plan execute` + `agents [--data-dir PATH] [--config-path PATH] plan apply` working end-to-end on a git repository with sandboxed execution
M2: Projects	Day 10	Project/Resource CLI working with git worktree sandbox	`agents [--data-dir PATH] [--config-path PATH] project create` + `agents [--data-dir PATH] [--config-path PATH] resource add git-checkout` + `agents [--data-dir PATH] [--config-path PATH] project link-resource` (B3.cli) + git worktree isolation verified
M3: Actors	Day 14	Full plan lifecycle with actors, skills, multi-file generation	Actor YAML parsed → LangGraph compiled → Skills executed → Multi-file ChangeSet produced → Validation passing → Applied
M4: Decisions	Day 21	Decision recording, tree viewing, correction mechanism	`agents [--data-dir PATH] [--config-path PATH] plan tree` shows decisions → `agents [--data-dir PATH] [--config-path PATH] plan explain` works → `agents [--data-dir PATH] [--config-path PATH] plan correct --mode=revert` re-executes from correction point
M4: Decisions	Day 21	Invariant CLI usage	`agents [--data-dir PATH] [--config-path PATH] invariant add --project <project> "<text>"` + `agents [--data-dir PATH] [--config-path PATH] invariant list --project <project>`
M5: Subplans	Day 25	Hierarchical subplans with parallel execution and merging	Parent plan spawns 5+ subplans → Parallel execution → Three-way merge → Validation passes
M6: Large Projects	Day 30	Handle 10,000+ file projects, autonomous language porting	Can port a 500-file Python module to TypeScript using hierarchical decomposition with decision correction
Server Connectivity	Beyond Day 30	Client interfaces for server communication; server developed independently	Client-to-server API abstractions defined, but local execution only; no server implementation in this project

CRITICAL: Server Connectivity Policy

The CleverAgents client does NOT include server functionality. The server is a separate project that will be developed independently. This implementation plan covers the client only. During Days 1-30, developers should:

Design with Server Connectivity in Mind: Ensure abstractions support future connection to an external server
Create Client Interface Stubs Only: Define ServerClientAPI, RemoteExecutionClient, AuthenticationClient interfaces but implement as stubs that raise NotImplementedError("Server connectivity not yet implemented")
No Server Implementation Work: The server is NOT part of this project—do NOT spend time on server implementation, only on client-side connection interfaces
Focus on Core Functionality: All effort goes to plan lifecycle, actors, skills, sandboxing, decisions, and subplans

The following Section 8 (Server Connectivity) items are explicitly OUT OF SCOPE for the 30-day deadline:

Client-to-server API integration
WebSocket streaming to server
Remote project execution via server
Server authentication flow (client-side)
Server API client implementation (beyond stubs)

Rationale: Getting a minimally usable application working for single-user local operation in 7 days, and large project autonomy in 30 days, is more valuable than incomplete server connectivity. The server will be developed as a separate project.

Critical Path Analysis

The following chains represent sequential dependencies where each item MUST complete before the next can start:

CHAIN 1: Data Layer (Days 1-3)

A5.alpha (DB migrations) → A5.beta (ORM models) → A5.gamma (repos/service/DI)

CHAIN 2: Resource Layer (Days 2-4)

B1.core (Domain Models) → B2.persistence (DB tables) → B2.service (Services) → B3.cli (CLI)

CHAIN 3: Sandbox Layer (Days 3-5)

B4.sandbox (Strategy + Manager) → B4.sandbox git_worktree → B4.sandbox copy_on_write

CHAIN 4: Actor Layer (Days 4-7)

C1.schema (Actor Schema) → C2.legacy (Drop v2 configs) → C2.loader (Actor Loader) → C2.compiler (Actor Compiler) → C2.refs (Reference Resolution)

CHAIN 5: Skill Layer (Days 5-8)

C3.protocol (Skill Protocol) → C3.context (Skill Context) → C3.inline (Inline Executor) → C4.file/C4.search/C4.git (Built-in Skills)

CHAIN 6: Change Tracking (Days 6-9)

C5.model (Change Models) → C5.router (Tool Router) → C5.diff (Diff Generator)

CHAIN 7: Plan-Actor Integration (Days 8-14)

C9.execute (Strategize/Execute) → C6.pipeline/C6.gating (Validation) → C9.apply (Apply + Review)

Parallel Workstream Allocation

WEEK 1 FOCUS: MVP (Local Source Code Only)

WEEK 1 PARALLEL TRACKS:

TRACK A [Jeff - CRITICAL PATH LEAD + Luis - ARCHITECTURE]:
├── Day 1 AM: Jeff - A5.alpha DB migrations + A5.action_arguments (2-3 hours)
│   └── Luis can start A5.beta ORM models after schema doc review
├── Day 1 PM: Jeff - A5.gamma repositories (2-3 hours)
│   └── Luis - A5.beta ORM models (parallel)
├── Day 2: Jeff - A5.gamma service integration (main blocker)
│   └── Luis - A5.gamma DI wiring
├── Day 3: Jeff - A5.legacy plan CLI cleanup + B3.cleanup legacy project CLI
├── Day 3-4: Jeff - C3.protocol/C3.context/C3.inline Skill framework (CRITICAL)
│   └── Luis - C5.model Change models + tracker (parallel after C3.protocol)
├── Day 5-6: Jeff - C4.file/C4.search Built-in skills (file/dir/search)
│   └── Luis - C5.router/C5.diff Tool router + diff review artifacts
├── Day 7: Jeff - C9.execute/C9.apply Plan-Actor integration (brings it all together)
│   └── Luis - C6.pipeline/C6.gating Validation pipeline + apply gating
└── Day 8: Jeff - MVP Integration Testing + Bug Fixes

TRACK B [Hamza - INFRASTRUCTURE (No LLM Knowledge Needed)]:
├── Day 1: B1.core Domain models (resource types, resources, projects)
├── Day 2: B2.persistence tables + B2.service service layer
│   └── B3.cli resource type/resource/project commands
├── Day 3: B4.sandbox strategy + manager + git_worktree
├── Day 4: B4.sandbox copy_on_write stub + git-checkout handler
├── Day 5: B2.service integration + resource registry service
├── Day 6: B2.persistence repositories + migration tests
└── Day 7: CLI integration tests + M2 merge gate verification

TRACK C [Aditya - ACTORS (Domain Expert - Hierarchical Configs)]:
├── Day 4: C1.schema Actor YAML schema models
│   └── Aditya writes ALL actor YAML examples (C1.examples)
├── Day 4-5: Jeff - C2.legacy remove v2 actor configs (dependency for C2.loader)
├── Day 5: C2.loader + C2.compiler Actor loading + compilation
├── Day 6: C2.refs Reference resolution + C7.mcp MCP Skill Adapter
├── Day 7: C8.providers Built-in provider actors (openai/, anthropic/, openrouter/)
└── Day 8: Actor compilation integration tests

TRACK Q [Brent - AUTOMATED QUALITY GATES (Days 1-3) then SELECTIVE REVIEW]:
├── Day 1: Pre-commit hooks setup (see Section 0 Q0-Minimum)
│   └── pyright, ruff, bandit, vulture, semgrep
├── Day 2: CI/CD pipeline with GitHub Actions (see Section 0 Q0-Minimum)
│   └── Automated PR validation, coverage enforcement
├── Day 3: Advanced automation & monitoring (see Section 0 Q0-Advanced)
│   └── Complexity checks, performance regression, metrics
├── Days 4-8: Selective manual review only for:
│   └── Architecture, complex algorithms, API contracts
├── Day 8: Sign off on MVP quality metrics
└── After Day 8: Transition to validation pipeline work with Luis

TRACK T [Rui - TESTING (CONTINUOUS - WRITE TESTS FIRST)]:
├── Day 1: A5.tests Plan/Action persistence tests (BEFORE implementation)
├── Day 1-2: B1.core model tests
├── Day 2-3: B3.cli CLI tests + Robot integration
├── Day 3-4: B4.sandbox tests (git worktree, copy_on_write stub, isolation)
├── Day 5: C3.protocol/C3.context/C3.inline skill framework tests
├── Day 6: C5.model/C5.router/C5.diff change tracking + tool routing tests
├── Day 7: C6.pipeline/C6.gating + C9.execute/C9.apply plan-actor integration tests
└── Day 8: Full MVP integration test suite

MERGE POINT: Day 8 - All tracks converge for MVP verification
  - All tests must pass
  - Coverage must be >=97%
  - Brent signs off on quality
  - Jeff leads integration testing
  
  MERGE POINT DAY 8 - EXPLICIT COORDINATION TASKS:
  ├── [Jeff - 9:00 AM] M1.1: Run full `nox` test suite, collect failures
  ├── [Jeff - 10:00 AM] M1.2: Verify Plan persistence (A5) connects to CLI (A4)
  │   └── Test: `agents [--data-dir PATH] [--config-path PATH] action create --config ... && agents [--data-dir PATH] [--config-path PATH] plan use <action> <project> && agents [--data-dir PATH] [--config-path PATH] plan status`
├── [Jeff - 11:00 AM] M1.3: Verify resource/project CLI (B3.cli) creates resources in DB (B2.persistence)
  │   └── Test: `agents [--data-dir PATH] [--config-path PATH] project create ... && agents [--data-dir PATH] [--config-path PATH] resource add git-checkout ... && agents [--data-dir PATH] [--config-path PATH] project link-resource ...`
├── [Jeff - 12:00 PM] M1.4: Verify Sandbox (B4.sandbox) integrates with resource registry service (B2.service)
  │   └── Test: Create plan, write to resource, verify sandbox isolation
├── [Luis - 1:00 PM] M1.5: Verify Actor compilation (C2.compiler/C2.refs) produces valid LangGraph
  │   └── Test: Compile each example actor, invoke with mock input
├── [Aditya - 2:00 PM] M1.6: Verify Skill execution (C3) records Changes (C5)
  │   └── Test: Execute WriteFileSkill, verify ChangeSet contains Change
├── [Hamza - 3:00 PM] M1.7: Verify Plan-Actor binding (C9) with real actors
  │   └── Test: Full plan use → execute → apply with openai/gpt-4
  ├── [Rui - 4:00 PM] M1.8: Run Robot end-to-end suite
  │   └── All robot/*.robot files must pass
  ├── [Brent - 5:00 PM] M1.9: Final quality gate
  │   └── Sign off: coverage >=97%, lint clean, typecheck clean
  └── [Jeff - 6:00 PM] M1.10: Tag release candidate v0.1.0-rc1

WEEK 2-3 PARALLEL TRACKS:

TRACK A [Jeff - DECISION CORRECTION (CRITICAL FOR 30-DAY GOAL)]:
├── Day 15-16: D4.revert Correction Service (core algorithm)
├── Day 17: D4.append Append correction mode
├── Day 18: D5.di Decision wiring + re-exec
├── Day 19: D5.di integration + unblocking E3 parallelism
└── Day 20-21: E3.exec Parallel Execution fine-tuning

TRACK B [Hamza - DECISION PERSISTENCE]:
├── Day 15-16: D1.domain Decision domain model
├── Day 16-17: D2.service Decision Service + recording
├── Day 17-18: D3.cli Decision CLI (tree, explain)
├── Day 18-19: D5.db/D5.repo Decision DB schema + repos
└── Day 19-20: D5.di Decision services wired to CLI

TRACK C [Aditya - STRATEGY ACTOR ENHANCEMENTS]:
├── Day 15-16: Strategy actor emitting SUBPLAN_SPAWN decisions
├── Day 17-18: Hierarchical actor configurations for decomposition
├── Day 19-20: E2.actor plan_subplan tool + E2.service spawn workflow
└── Day 21: Integration with decision tree

TRACK D [Luis - SUBPLANS & MERGING]:
├── Day 12-13: E1.domain Subplan Model (before D stage)
├── Day 12-14: E2.service SubplanService + queries
├── Day 19: E3.exec Parallel Execution (after Jeff unblocks)
├── Day 20: E4.merge Result Merging (three-way, sequential)
└── Day 21: E4.merge Post-merge validation

TRACK Q [Brent - HIGH-IMPACT QUALITY WORK]:
├── Days 15-16: Help Luis with semantic validation framework
├── Day 17: Review decision model architecture (P0 priority)
├── Day 19: Review subplan merge algorithms (P0 priority)
├── Day 20: Create validation test scenarios with edge cases
└── Day 21: M4 quality gate - automated metrics check

TRACK T [Rui - TESTING]:
├── Day 15-16: D1.domain Decision model tests
├── Day 17-18: D2.service + D3.cli Decision service + CLI tests
├── Day 19: E2.service Subplan spawning tests
├── Day 20: E3.exec Parallel execution tests
└── Day 21: E4.merge Merge tests

MERGE POINT: Day 21 - M4 Decision Correction Working

WEEK 4 PARALLEL TRACKS (Days 22-30):

TRACK A [Jeff - LARGE PROJECT AUTONOMY]:
├── Day 22-23: G1.decompose Deep subplan hierarchies (5+ levels)
├── Day 24-25: E5.multi Multi-project support
├── Day 26-28: G3.semantic validation + perf tuning
├── Day 29: End-to-end language porting test (Python → TypeScript)
└── Day 30: Final M6 verification + bug fixes

TRACK B [Hamza - CONTEXT INDEXING]:
├── Day 22-23: G4.context hot/warm tiers (recent decisions from plan tree)
├── Day 24-25: G4.context cold tier queries (historical decisions)
├── Day 26-28: CTX1.index/CTX2.embedding indexing optimization
└── Day 29-30: Integration with decision correction

TRACK C [Aditya - ACTOR OPTIMIZATION]:
├── Day 22-23: Context views (strategist, executor, reviewer)
├── Day 24-25: Bounded dependency closure computation
├── Day 26-28: Actor caching + compilation optimization
└── Day 29-30: Large project actor testing

TRACK D [Luis - AUTOMATION LEVELS]:
├── Day 22-23: A6.core automation level implementation
├── Day 24-25: A6.service confidence-based escalation
├── Day 26-28: A6.service review-before-apply mode
└── Day 29-30: A6.cli automation mode testing

TRACK Q [Brent - VALIDATION & EDGE CASE TESTING]:
├── Days 22-25: Deep validation testing with Luis
│   └── Edge cases, error paths, semantic checks
├── Days 26-28: Performance optimization validation
│   └── Verify 10K+ file handling, memory usage
├── Day 29: Automated quality report generation
└── Day 30: M6 automated metrics verification + sign-off

TRACK T [Rui - INTEGRATION TESTS]:
├── Day 22-24: E5.multi Multi-project tests
├── Day 25-27: Large project tests (1K, 5K, 10K files)
├── Day 28-29: Autonomous porting end-to-end test
└── Day 30: Final test suite run

MERGE POINT: Day 30 - M6 Large Project Autonomy Target

  MERGE POINT DAY 30 - EXPLICIT COORDINATION TASKS:
  ├── [Jeff - 9:00 AM] M6.1: Run full `nox` test suite including large project tests
  ├── [Jeff - 10:00 AM] M6.2: Execute autonomous language porting test (Python → TypeScript)
  │   └── Test: Port a 500-file Python module with hierarchical decomposition
  ├── [Luis - 11:00 AM] M6.3: Verify decision correction re-execution works
  │   └── Test: Correct a strategy decision, verify downstream re-executes
  ├── [Hamza - 12:00 PM] M6.4: Verify deep subplan hierarchies (5+ levels)
  │   └── Test: Create plan that spawns subplans recursively
  ├── [Aditya - 1:00 PM] M6.5: Verify context views filter appropriately for large codebases
  │   └── Test: strategist view vs executor view on 10K file project
  ├── [Luis - 2:00 PM] M6.6: Verify parallel execution with merge works
  │   └── Test: 5 parallel subplans, three-way merge, no conflicts
  ├── [Hamza - 3:00 PM] M6.7: Verify context cold tier queries work
  │   └── Test: Query historical decisions from past plans
  ├── [Rui - 4:00 PM] M6.8: Run Robot large project test suite
  │   └── All robot/large_project_*.robot files must pass
  ├── [Brent - 5:00 PM] M6.9: Final documentation and quality gate
  │   └── Sign off: All ADRs current, coverage >=97%, docs complete
  └── [Jeff - 6:00 PM] M6.10: Tag release v0.3.0 (Large Project Autonomy)

Parallel Workstreams Structure

Workstream A: Plan Lifecycle & Persistence [Jeff + Luis] - CRITICAL PATH
Workstream B: Projects & Resources [Hamza] - PARALLEL with A
Workstream B focus: B1.core domain models, B2.persistence/B2.service, B3.cli, B4.sandbox
Workstream C: Actors, Skills & Change Tracking [Aditya + Jeff] - After Day 3
Workstream Q: Quality Assurance [Brent] - CONTINUOUS
Workstream T: Testing [Rui] - CONTINUOUS

Merge Points:

Day 7 (M1): All workstreams coordinate for MVP verification
Day 14 (M3): Full plan lifecycle integration
Day 21 (M4): Decision tree and correction mechanism
Day 30 (M6): Large project autonomy target

MERGE POINT DAY 14 (M3) - Full Plan Lifecycle Integration:

├── [Jeff - 9:00 AM] M3.1: Verify full plan lifecycle end-to-end
│   └── Test: action create → plan use → plan execute → plan apply
├── [Aditya - 10:00 AM] M3.2: Verify actor YAML loads and compiles to LangGraph
│   └── Test: All examples/actors/*.yaml compile without error
├── [Luis - 11:00 AM] M3.3: Verify tool-based change tracking produces valid ChangeSet
│   └── Test: Actor makes edits via skills, ChangeSet reflects all changes
├── [Hamza - 12:00 PM] M3.4: Verify sandbox commit applies changes to original
│   └── Test: Execute with sandbox, commit, verify git commits appear
├── [Aditya - 1:00 PM] M3.5: Verify MCP skill adapter works with external server
│   └── Test: Connect to filesystem MCP server, execute tool, verify result
├── [Luis - 2:00 PM] M3.6: Verify validation pipeline catches errors
│   └── Test: Generate invalid Python, verify syntax validation fails
├── [Rui - 3:00 PM] M3.7: Run Robot actor integration suite
├── [Brent - 4:00 PM] M3.8: Quality gate for M3
└── [Jeff - 5:00 PM] M3.9: Tag release v0.2.0-rc1 (Actors & Skills)

MERGE POINT DAY 21 (M4) - Decision Tree & Correction:

├── [Hamza - 9:00 AM] M4.1: Verify decision recording captures context
│   └── Test: Execute strategy phase, verify decisions recorded with snapshots
├── [Jeff - 10:00 AM] M4.2: Verify decision correction re-executes from point
│   └── Test: Correct a strategy decision, verify downstream work redone
├── [Hamza - 11:00 AM] M4.3: Verify decision tree visualization works
│   └── Test: `agents [--data-dir PATH] [--config-path PATH] plan tree <plan_id>` shows correct hierarchy
├── [Jeff - 12:00 PM] M4.4: Verify sandbox checkpointing supports correction
│   └── Test: Checkpoint, make changes, rollback to checkpoint
├── [Luis - 1:00 PM] M4.5: Verify subplan spawning creates valid child plans
│   └── Test: Strategy actor spawns 3 subplans, all have correct parent_plan_id
├── [Aditya - 2:00 PM] M4.6: Verify strategy actor emits SUBPLAN_SPAWN decisions
│   └── Test: Actor config enables subplan spawning, decision recorded
├── [Rui - 3:00 PM] M4.7: Run Robot decision correction suite
├── [Brent - 4:00 PM] M4.8: Quality gate for M4
└── [Jeff - 5:00 PM] M4.9: Tag release v0.2.0 (Decision Correction)

Section 0: Quality Automation Setup [WORKSTREAM Q - Brent Lead]

Target: Days 0-3 (Minimum gates before merges; advanced gates after M1)

Parallelization rules:

Minimum gating (pre-commit + CI + coverage enforcement) is a merge blocker; it can run in parallel with Week 1 coding but must land before any feature branches merge.
Advanced automation (complexity metrics, dashboards, extended security scanning) is deferred until after M1 to avoid blocking the MVP.

Parallel Group Q0-Minimum Gates [Brent - blocks merges]

COMMIT (Owner: Brent | Group: Q0-Minimum) - Commit message: "feat(qa): add pre-commit baseline hooks" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Brent]: Add pre-commit>=3.6.0 to pyproject.toml dev dependencies and ensure it is included in the dev extra.
- Code [Brent]: Create .pre-commit-config.yaml pinned to specific hook versions; include ruff format, ruff check, pyright, check-merge-conflict, end-of-file-fixer, trailing-whitespace.
- Code [Brent]: Add pyrightconfig.json validation to pre-commit (hook that fails if config missing or invalid).
- Code [Brent]: Add/confirm nox -s lint session that runs Ruff + pyright using project settings; ensure session exits non-zero on warnings.
- Code [Brent]: Add/confirm nox -s format session for Ruff formatting and align it with pre-commit ruff format behavior.
- Docs [Brent]: Update CONTRIBUTING.md with pre-commit install + run steps (no helper scripts).
- Tests (Behave) [Brent]: Add scenarios in features/quality_automation.feature that parse .pre-commit-config.yaml, assert required hooks are present, and verify pinned versions.
- Tests (Robot) [Brent]: Add robot/quality_automation.robot that runs nox -s lint and asserts zero failures.
- Tests (ASV) [Brent]: Add asv/benchmarks/precommit_config_bench.py to benchmark config parsing and hook list extraction.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "feat(qa): add pre-commit baseline hooks".
COMMIT (Owner: Brent | Group: Q0-Minimum) - Commit message: "feat(ci): add nox-based PR validation workflow" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Brent]: Update .forgejo/workflows/ci.yml (or create .github/workflows/pr-validation.yml if required) to install dependencies via Hatch and run nox (unit + integration + typecheck + lint + coverage_report).
- Code [Brent]: Ensure CI uses Python 3.13, caches pip/Hatch artifacts, and uploads nox logs on failure.
- Code [Brent]: Fail pipeline if any nox session fails or coverage <97% (explicit coverage gate).
- Docs [Brent]: Add CI usage notes in docs/development/ci-cd.md, including local repro commands and cache notes.
- Tests (Behave) [Brent]: Add a scenario that validates the workflow file exists and references required nox sessions.
- Tests (Robot) [Brent]: Add a Robot smoke test that runs the same nox session matrix locally and asserts zero failures.
- Tests (ASV) [Brent]: Add asv/benchmarks/ci_yaml_parse_bench.py to benchmark workflow parsing and key lookup.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "feat(ci): add nox-based PR validation workflow".
COMMIT (Owner: Brent | Group: Q0-Minimum) - Commit message: "feat(qa): enforce coverage >=97%" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Brent]: Update nox -s coverage_report (or equivalent session) to fail when coverage <97% and emit a clear error message.
- Code [Brent]: Wire coverage threshold enforcement into CI summary output (explicit failure line for parsing).
- Docs [Brent]: Update docs/development/testing.md with new coverage requirement and sample output.
- Tests (Behave) [Brent]: Add a scenario that parses coverage config and asserts threshold >=97%.
- Tests (Robot) [Brent]: Add a Robot test that runs nox -s coverage_report and asserts pass/fail behavior.
- Tests (ASV) [Brent]: Add asv/benchmarks/coverage_report_bench.py for coverage report runtime baseline.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "feat(qa): enforce coverage >=97%".

Parallel Group Q0-Advanced Gates [Brent - AFTER M1]

COMMIT (Owner: Brent | Group: Q0-Advanced) - Commit message: "feat(qa): add security scanning hooks" (After M1)
- Code [Brent]: Add bandit[toml]>=1.7.5 and semgrep dev dependencies; configure rules in pyproject.toml.
- Code [Brent]: Add pre-commit hooks for Bandit + Semgrep with minimal safe ruleset and explicit exclude patterns.
- Code [Brent]: Add nox -s security session that runs Bandit + Semgrep with config files.
- Docs [Brent]: Document security scan expectations in docs/development/quality-automation.md.
- Tests (Behave) [Brent]: Add scenario verifying Bandit/Semgrep hooks are declared in .pre-commit-config.yaml.
- Tests (Robot) [Brent]: Add Robot test that runs nox -s security (create session if missing).
- Tests (ASV) [Brent]: Add asv/benchmarks/security_scan_bench.py to baseline scan runtime.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "feat(qa): add security scanning hooks".
COMMIT (Owner: Brent | Group: Q0-Advanced) - Commit message: "feat(qa): add complexity monitoring" (After M1)
- Code [Brent]: Add radon>=6.0.1 and a nox -s complexity session with threshold <=10.
- Code [Brent]: Add complexity check to CI matrix (non-blocking until M3) and print summary.
- Docs [Brent]: Document complexity thresholds and exceptions policy.
- Tests (Behave) [Brent]: Add scenario that asserts radon configuration exists.
- Tests (Robot) [Brent]: Add Robot test that runs nox -s complexity on a fixture module.
- Tests (ASV) [Brent]: Add asv/benchmarks/complexity_scan_bench.py for radon runtime baseline.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "feat(qa): add complexity monitoring".
COMMIT (Owner: Brent | Group: Q0-Advanced) - Commit message: "docs(qa): add quality automation guide" (After M1)
- Docs [Brent]: Create docs/development/quality-automation.md with hook lists, CI steps, and troubleshooting.
- Docs [Brent]: Link the guide from README.md and CONTRIBUTING.md.
- Tests (Behave) [Brent]: Add scenario verifying the guide exists and is linked.
- Tests (Robot) [Brent]: Add Robot doc build smoke test via nox -s docs.
- Tests (ASV) [Brent]: Add asv/benchmarks/docs_build_bench.py for docs build runtime baseline.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "docs(qa): add quality automation guide".

Section 1: Completed Foundation (Phases 0-1) [PRESERVED]

Phase 0: Discovery and Requirements Elaboration
- Code: Implement Python discovery tooling for CLI, server, data contracts, supporting assets, environment variables, implicit behaviors, and parity matrix generation.
- Document: Append findings, scripts, and open questions to Phase 0 Notes with file_path:line_number references.
- Tests: Run Behave discovery scenarios and Robot smoke suites covering the generated artifacts.
Phase 1: Architecture Definition
- Code: Produce ADR stubs, module scaffolding, coding standard configurations, and packaging setup.
  - ADR-001: Python Package Layering and Module Boundaries
  - ADR-002: Asyncio Concurrency Model
  - ADR-003: Dependency Injection Framework
  - ADR-004: Pydantic for Data Validation
  - ADR-005: Error Handling Hierarchy
  - ADR-006: CLEVERAGENTS Environment Variables
  - ADR-007: Repository Pattern for Persistence
  - ADR-008: Provider Plugin Architecture
  - ADR-009: CLI Framework Selection
  - ADR-010: Logging and Observability
- Document: Update Phase 1 Notes with ADR locations, dependency policies, and style guides.
- Tests: Execute Ruff, pyright, Behave architecture scenarios, and Robot lint pipelines.

Section 2: Preserved Work from Previous Implementation [PRESERVED]

LangChain/LangGraph Foundation
- Dependencies installed (langchain, langgraph, langsmith, etc.)
- ADR-011: LangChain/LangGraph Integration Patterns
- Base StateGraph classes (BaseAgent, BaseStateGraph)
- LangChain mock provider (FakeListLLM)
Core LangGraph Workflows
- PlanGenerationGraph (load_context -> analyze_requirements -> generate_plan -> validate)
- ContextAnalysisAgent (5-node workflow for context analysis)
- AutoDebugGraph (analyze_error -> generate_fix -> validate_fix -> apply_fix)
- Memory service with EntityMemory
- CLI streaming integration
Provider Integration
- Provider registry
- OpenAI, Anthropic, Google, OpenRouter adapters
- LangSmith observability
Actor System (Stage 7.5)
- Actor domain model with config hashing
- Actor persistence (database, repository)
- Actor registry (built-ins from provider registry)
- Actor CLI commands (add, update, remove, list, show)
- Actor-first plan/chat commands (--actor flag)
- v2 format compatibility for actor configs

Section 3: Plan Lifecycle [WORKSTREAM A - Luis Lead]

Target: Milestone M1 (+7 days)

WEEK 1 - CRITICAL PATH

Stage A1: Plan Data Model (Day 1) - COMPLETED 2026-02-05
- Code: Create Plan domain model
  - Define Plan Pydantic model with fields (plan_id ULID, parent_plan_id, root_plan_id, attempt counter, phase, state, timestamps)
  - Define PlanPhase enum (Action, Strategize, Execute, Apply, Applied)
  - Define PlanState enum per phase (available, draft, archived, queued, processing, errored, complete, cancelled)
  - Add namespace support to plan naming ([server:][namespace/]<name>)
  - Location: src/cleveragents/domain/models/core/plan.py
- Tests: Behave scenarios for plan model validation, phase/state transitions (30 scenarios in features/plan_model.feature)
Stage A2: Action Model (Day 1) - COMPLETED 2026-02-05
- Code: Create Action domain model
  - Define Action Pydantic model (name, description, definition_of_done, strategy_actor, execution_actor, inputs_schema, reusable, read_only)
  - Add argument parsing for action parameters (--arg name:type:required|optional:description)
  - Location: src/cleveragents/domain/models/core/action.py
- Tests: Behave scenarios for action model validation (22 scenarios in features/action_model.feature) Parallel Group A2b: Action/Plan Spec Alignment (M1-critical) PARALLEL SUBTRACK A2b.alpha [Jeff]: Action model alignment + invariants/automation metadata PARALLEL SUBTRACK A2b.beta [Luis]: Plan metadata alignment + action linkage PARALLEL SUBTRACK A2b.gamma [Aditya]: Action YAML schema + examples (config-first) SEQUENTIAL MERGE NOTE: A2b.alpha + A2b.beta must land before A4b CLI wiring.
COMMIT (Owner: Jeff | Group: A2b.alpha) - Commit message: "feat(domain): align action metadata with invariants and automation profiles" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Update src/cleveragents/domain/models/core/action.py docstring to state actions are defined via YAML config and registered via CLI (remove "NOT YAML" wording).
- Code [Jeff]: Add automation_profile field (namespaced name string) to Action and validate <namespace>/<name> format + local/ default handling.
- Code [Jeff]: Add invariant_actor (optional actor ref) and invariants list (action-scoped) with trimming, de-duplication, and empty-string rejection.
- Code [Jeff]: Add definition_of_done_template to preserve the pre-rendered DoD string before arg substitution; keep definition_of_done as rendered output.
- Code [Jeff]: Default definition_of_done_template to the original definition_of_done when omitted, and ensure Pydantic round-trip (model_dump/model_validate) preserves both fields.
- Code [Jeff]: Add Action.render_definition_of_done() that renders the template using validated args and raises explicit errors on missing keys.
- Code [Jeff]: Extend ActionArgument validation to enforce min_value <= max_value, regex only for string args, and default value type checks; reject defaults that violate regex.
- Code [Jeff]: Add ActionArgument.coerce_value() helper that converts CLI/YAML strings into typed values (int/float/bool/list) with clear errors.
- Code [Jeff]: Add ActionArgument.from_mapping() to parse YAML argument dicts (name/type/required/description/default/min/max/regex) and normalize them into ActionArgument instances.
- Code [Jeff]: Add Action.to_template_context() (or equivalent) to generate deterministic arg context for templating and preserve ordering for tests.
- Code [Jeff]: Add Action.from_config() to build an Action from YAML config + CLI overrides with stable argument ordering for deterministic tests.
- Code [Jeff]: Update ActionArgument.__str__() to surface default/min/max/regex when emitting diagnostics or CLI output.
- Code [Jeff]: Update Action.validate_arguments() to use default values when optional args are omitted and to include regex/min/max checks in error output.
- Code [Jeff]: Update PlanLifecycleService.create_action() to accept invariants, invariant_actor, automation_profile, and definition_of_done_template and pass them into the domain model.
- Docs [Jeff]: Update or create docs/reference/action_model.md with new fields, YAML-first guidance, and invariants/automation profile semantics.
- Tests (Behave) [Jeff]: Add scenarios in features/action_model.feature for invariants validation, automation profile parsing, definition_of_done_template retention, and default value coercion.
- Tests (Robot) [Jeff]: Add Robot scenario that loads action YAML and asserts invariants/automation profile fields are surfaced in CLI output (wired in A4b).
- Tests (ASV) [Jeff]: Add asv/benchmarks/action_model_bench.py to benchmark action argument parsing + template rendering.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(domain): align action metadata with invariants and automation profiles".
COMMIT (Owner: Luis | Group: A2b.beta) - Commit message: "feat(domain): align plan metadata with action linkage and automation profiles" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add action_name (namespaced name string) and action_id (ULID string) to Plan for traceability to the originating action.
- Code [Luis]: Replace project_ids with project_names (namespaced names) and introduce ProjectLink structure (name, alias, read_only) to preserve link metadata per plan.
- Code [Luis]: Add validators to enforce namespaced project names, unique aliases, and stable ordering for CLI display.
- Code [Luis]: Add automation_profile, invariant_actor, and invariants fields to Plan with explicit source tags (action/project/plan/global) and ordering rules.
- Code [Luis]: Add arguments map (validated JSON-serializable values) and definition_of_done_template capture to the plan model for later re-rendering.
- Code [Luis]: Add execution metadata placeholders: changeset_id, sandbox_refs, validation_summary, and decision_root_id (optional until later stages).
- Code [Luis]: Add Plan.validate_immutable_fields() to enforce automation profile immutability after plan use and when phase progresses beyond Strategize.
- Code [Luis]: Update PlanLifecycleService.use_action() to populate action linkage, arguments, invariants, automation profile, and project link metadata on the Plan.
- Code [Luis]: Update _print_lifecycle_plan in src/cleveragents/cli/commands/plan.py to render project names/aliases instead of raw IDs.
- Docs [Luis]: Update docs/reference/plan_model.md to document new fields, immutability rules, and action linkage.
- Tests (Behave) [Luis]: Add scenarios in features/plan_model.feature for automation profile lock, invariant persistence, action linkage fields, and argument serialization.
- Tests (Robot) [Luis]: Add Robot scenario to inspect plan status output for action linkage and automation profile fields (once CLI aligned).
- Tests (ASV) [Luis]: Add asv/benchmarks/plan_model_bench.py for plan validation and serialization.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(domain): align plan metadata with action linkage and automation profiles".
COMMIT (Owner: Aditya | Group: A2b.gamma) - Commit message: "docs(action): add action YAML schema and examples" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Docs [Aditya]: Author docs/schema/action.schema.yaml with versioning, required fields, and explicit type constraints for actors, invariants, arguments, and automation profiles.
- Docs [Aditya]: Add example action configs under examples/actions/ (simple, invariant-heavy, multi-project, estimation-actor, and read-only examples).
- Code [Aditya]: Add schema validation helper in src/cleveragents/action/schema.py that loads YAML, validates schema version, and returns typed data.
- Code [Aditya]: Add clear error messages for missing required fields, invalid namespaced names, and invalid argument type combos.
- Code [Aditya]: Add unit helper to normalize YAML keys (snake_case vs camelCase) before validation.
- Tests (Behave) [Aditya]: Add scenarios that load each example YAML and assert schema validation passes; add invalid schema cases (missing actor, invalid namespaced name, bad arg types).
- Tests (Robot) [Aditya]: Add a Robot smoke test that reads example YAML files and reports parse success/failure.
- Tests (ASV) [Aditya]: Add asv/benchmarks/action_schema_bench.py for YAML schema validation throughput.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "docs(action): add action YAML schema and examples".
Stage A3: Plan State Machine (Day 1-2) - COMPLETED 2026-02-05
- Code: Implement plan lifecycle state machine
  - Create PlanLifecycleService with phase transition methods
  - Implement create_action() - creates plan in Action phase
  - Implement use_action(action, projects, args) - transitions to Strategize
  - Implement execute_plan() - transitions to Execute
  - Implement apply_plan() - transitions to Applied
  - Add validation for phase transitions (only valid transitions allowed)
  - Location: src/cleveragents/application/services/plan_lifecycle_service.py
- Tests: Behave scenarios for all phase transitions, invalid transition errors (29 scenarios in features/plan_lifecycle_service.feature)
Stage A4: Plan CLI Commands (Day 2-3) - IN PROGRESS 2026-02-05
- Code: Implement plan lifecycle CLI
  - agents [--data-dir PATH] [--config-path PATH] action create --config <file> [<name>] [--strategy-actor <actor>] [--execution-actor <actor>] [--definition-of-done "<text>"] [--arg ...] (legacy --name syntax kept in historical notes)
  - agents [--data-dir PATH] [--config-path PATH] action list - list available actions
  - agents [--data-dir PATH] [--config-path PATH] action show <name> - show action details
  - agents [--data-dir PATH] [--config-path PATH] action available <id> - make action available
  - agents [--data-dir PATH] [--config-path PATH] action archive <id> - archive action
  - agents [--data-dir PATH] [--config-path PATH] plan use <action> <project> [--arg name=value ...] - create plan from action (legacy --project syntax kept in historical notes)
  - agents [--data-dir PATH] [--config-path PATH] plan execute [plan_id] - execute current or specified plan
  - agents [--data-dir PATH] [--config-path PATH] plan apply [plan_id] - apply executed plan (v3 lifecycle)
  - agents [--data-dir PATH] [--config-path PATH] plan status [plan_id] - show plan phase/state
  - agents [--data-dir PATH] [--config-path PATH] plan list [--phase <phase>] [--state <state>] [--project <project>] [--action <action>] - list plans with filters
  - agents [--data-dir PATH] [--config-path PATH] plan cancel <plan_id> - cancel non-terminal plan
  - Location: src/cleveragents/cli/commands/action.py, src/cleveragents/cli/commands/plan.py
- Tests: Behave tests for action CLI (15 scenarios in features/action_cli.feature) Parallel Group A4b: Action/Plan CLI Spec Alignment + Tests (M1-critical) PARALLEL SUBTRACK A4b.alpha [Jeff]: CLI feature alignment PARALLEL SUBTRACK A4b.beta [Rui]: Behave + Robot coverage SEQUENTIAL MERGE NOTE: A4b.alpha depends on A2b.alpha + A2b.beta + A2b.gamma; A4b.beta runs after A4b.alpha to lock CLI output fields and error messages.
COMMIT (Owner: Jeff | Group: A4b.alpha) - Commit message: "feat(cli): support action create from YAML config" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add --config/-c to agents action create; load YAML via src/cleveragents/action/schema.py and fail fast on schema violations.
- Code [Jeff]: Resolve --config paths relative to CWD and emit explicit errors for missing/unreadable files (include path in error).
- Code [Jeff]: Implement override precedence (CLI flags override YAML fields; explicit CLI empty string clears YAML value; CLI omits leave YAML as-is).
- Code [Jeff]: Validate CLI name vs YAML name when both provided; error on mismatch and require YAML name when CLI omits it.
- Code [Jeff]: Use Action.from_config() to merge YAML + CLI and preserve deterministic argument ordering for tests.
- Code [Jeff]: Normalize namespaced names, actor refs, and argument definitions from YAML into ActionArgument objects; surface errors with field path.
- Code [Jeff]: Add --update guard (if action exists) or explicit error per spec; ensure idempotent update path is clear.
- Code [Jeff]: When --update is used, preserve action_id and created_at, update updated_at, and surface action state in output.
- Code [Jeff]: Update _print_action output in src/cleveragents/cli/commands/action.py to show invariants, invariant_actor, and automation_profile.
- Docs [Jeff]: Update CLI reference with YAML-based action creation + override examples and failure messages.
- Tests (Behave) [Jeff]: Add scenarios in features/action_cli.feature covering valid config, overrides, invalid schema, missing required fields, and update conflict.
- Tests (Robot) [Jeff]: Add robot/action_cli_from_config.robot with end-to-end CLI flow and output assertions (includes invariants/profile display).
- Tests (ASV) [Jeff]: Add asv/benchmarks/action_cli_config_bench.py for config parsing + normalization.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(cli): support action create from YAML config".
COMMIT (Owner: Jeff | Group: A4b.alpha) - Commit message: "feat(cli): extend plan use with invariants and automation profile" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Change agents plan use signature to accept positional <project> arguments per spec and keep --project as a legacy alias only until A5.legacy removal.
- Code [Jeff]: Add --automation-profile, --invariant, and --invariant-actor flags to agents plan use and plumb into PlanLifecycleService.
- Code [Jeff]: Resolve positional project names via ProjectService; error on missing projects and preserve positional ordering.
- Code [Jeff]: Parse --arg name=value using ActionArgument.coerce_value() (not heuristic int/float guessing) and reject unknown args early.
- Code [Jeff]: Resolve action name -> action_id, validate automation profile existence via AutomationProfileService, and attach plan-scoped invariants.
- Code [Jeff]: Persist resolved invariants + profile in Plan metadata for later Strategize/Execute steps; include invariant source tags.
- Docs [Jeff]: Update docs/reference/plan_cli.md with examples for profile + invariants, positional project usage, and error cases.
- Tests (Behave) [Jeff]: Add scenarios in features/plan_lifecycle_cli.feature covering profile selection, invariant validation, positional project args, and multiple projects.
- Tests (Robot) [Jeff]: Add Robot tests for plan use with invariants and automation profiles (positive + negative cases).
- Tests (ASV) [Jeff]: Add asv/benchmarks/plan_use_cli_bench.py for argument parsing and validation.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(cli): extend plan use with invariants and automation profile".
COMMIT (Owner: Rui | Group: A4b.beta) - Commit message: "test(cli): add plan lifecycle Behave and Robot coverage" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Tests (Behave) [Rui]: Add full coverage for plan execute, plan apply, plan status, plan list, plan cancel (success + error paths, invalid phase, missing plan, multiple plans ready).
- Tests (Robot) [Rui]: Add robot/plan_lifecycle_cli.robot covering end-to-end lifecycle transitions with real DB persistence.
- Docs [Rui]: Update docs/development/testing.md with new CLI suites and command mappings.
- Tests (ASV) [Rui]: Add asv/benchmarks/plan_cli_smoke_bench.py for CLI argument parsing overhead.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "test(cli): add plan lifecycle Behave and Robot coverage".

Parallel Group A5: Plan Persistence (M1-critical) PARALLEL SUBTRACK A5.alpha [Jeff]: Alembic migrations for action/plan tables PARALLEL SUBTRACK A5.beta [Luis]: SQLAlchemy models for new tables SEQUENTIAL AFTER alpha+beta [Jeff + Luis]: Repositories + service integration PARALLEL CONTINUOUS [Rui]: Persistence tests added inside each commit SEQUENTIAL NOTE: action_arguments migration must land after actions migration; A5.legacy should land after A4b CLI alignment + A5.gamma persistence wiring. SEQUENTIAL NOTE: A5.alpha migrations must match A2b fields; rebase Alembic head after A2b merges before cutting follow-on revisions.

COMMIT (Owner: Jeff | Group: A5.alpha) - Commit message: "feat(db): add actions and action_invariants tables" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add Alembic migration skeleton with explicit down_revision dependency and naming conventions for indexes/constraints.
- Code [Jeff]: Create actions table with ULID PK, namespaced_name, namespace, name, and explicit actor refs (strategy/execution/review/apply/estimation).
- Code [Jeff]: Add action_state enum column (draft/available/archived) with default draft and validation-friendly values.
- Code [Jeff]: Add description columns (short_description, long_description) and DoD columns (definition_of_done, definition_of_done_template).
- Code [Jeff]: Add behavioral columns (automation_profile, invariant_actor, reusable, read_only) and metadata (tags_json, created_by, timestamps).
- Code [Jeff]: Add action_invariants table with FK to actions, scope column, invariant_text, optional position, and created_at timestamp.
- Code [Jeff]: Add unique index on actions.namespaced_name, index on actions.namespace, and index on actions.action_state for list filters.
- Code [Jeff]: Ensure downgrade path drops indexes and tables in reverse order.
- Docs [Jeff]: Update docs/reference/database_schema.md with column-level details and constraints.
- Tests (Behave) [Jeff]: Add migration scenario that runs upgrade and asserts tables + indexes exist.
- Tests (Robot) [Jeff]: Add Robot migration smoke test using nox -s db_migrate (create session if missing).
- Tests (ASV) [Jeff]: Add asv/benchmarks/db_migration_actions_bench.py for migration runtime baseline.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(db): add actions and action_invariants tables".
COMMIT (Owner: Jeff | Group: A5.alpha) - Commit message: "feat(db): add action_arguments table" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add Alembic migration for action_arguments table with ULID-less FK to actions and ordered position for deterministic argument ordering.
- Code [Jeff]: Add columns for name, arg_type, requirement, description, default_value_json, min_value, max_value, validation_pattern.
- Code [Jeff]: Add check constraints for numeric min/max ordering and non-empty argument names.
- Code [Jeff]: Add uniqueness constraint on (action_id, name) and index on (action_id, position).
- Docs [Jeff]: Update docs/reference/database_schema.md with action_arguments columns and constraints.
- Tests (Behave) [Jeff]: Add migration scenario verifying action_arguments table and constraints.
- Tests (Robot) [Jeff]: Add Robot migration smoke test that inserts a row and queries it.
- Tests (ASV) [Jeff]: Add asv/benchmarks/db_migration_action_args_bench.py for migration baseline.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(db): add action_arguments table".
COMMIT (Owner: Jeff | Group: A5.alpha) - Commit message: "feat(db): add lifecycle_plans and plan_projects tables" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add Alembic migration for lifecycle_plans with ULID PK and identity fields (parent_plan_id, root_plan_id, attempt).
- Code [Jeff]: Add core plan columns: namespaced_name, namespace, description, definition_of_done, definition_of_done_template.
- Code [Jeff]: Add lifecycle columns: phase enum, processing_state enum, action_state enum (nullable after Action), and timestamps for each phase.
- Code [Jeff]: Add action linkage columns (action_id, action_name) and actor refs (strategy/execution/review/apply/estimation).
- Code [Jeff]: Add policy/metadata columns (automation_profile, invariant_actor, read_only, reusable, created_by, tags_json).
- Code [Jeff]: Add execution placeholders (changeset_id, sandbox_refs_json, validation_summary_json, decision_root_id, error_message, error_details_json).
- Code [Jeff]: Add plan_projects table with plan_id, project_name (namespaced), alias, read_only flag, and created_at.
- Code [Jeff]: Add uniqueness constraint on (plan_id, project_name) and index on (project_name) for lookups.
- Code [Jeff]: Add indexes on phase, processing_state, and namespace for list filtering.
- Docs [Jeff]: Update schema docs with plan/project link rules and uniqueness constraints.
- Tests (Behave) [Jeff]: Add migration scenario verifying plan/project link table + indexes.
- Tests (Robot) [Jeff]: Add Robot test that inserts a plan/project link row and queries it.
- Tests (ASV) [Jeff]: Add asv/benchmarks/db_migration_plans_bench.py for migration runtime baseline.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(db): add lifecycle_plans and plan_projects tables".
COMMIT (Owner: Jeff | Group: A5.alpha) - Commit message: "feat(db): add plan arguments and plan invariants tables" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add plan_arguments table with plan_id, name, value_json, value_type, and position for stable ordering.
- Code [Jeff]: Add plan_invariants table with plan_id, invariant_text, source_scope, optional position, and created_at.
- Code [Jeff]: Add uniqueness constraint on (plan_id, name) for arguments and (plan_id, invariant_text) for invariants.
- Code [Jeff]: Add index on (plan_id, position) for fast ordered retrieval.
- Docs [Jeff]: Document argument storage, JSON serialization rules, and invariant source scopes.
- Tests (Behave) [Jeff]: Add migration scenario verifying both tables and constraints.
- Tests (Robot) [Jeff]: Add Robot test that inserts a plan invariant and asserts retrieval.
- Tests (ASV) [Jeff]: Add asv/benchmarks/db_migration_plan_args_bench.py for migration runtime baseline.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(db): add plan arguments and plan invariants tables".
COMMIT (Owner: Luis | Group: A5.beta) - Commit message: "feat(models): add action and lifecycle plan ORM models" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add SQLAlchemy base model mixins for ULID PKs, timestamps, and JSON columns (reused by action/plan models).
- Code [Luis]: Implement ActionModel with columns for namespaced_name, namespace, actor refs, DoD fields, automation_profile, invariant_actor, state, tags_json, created_by.
- Code [Luis]: Implement ActionInvariantModel with FK to actions, scope, invariant_text, position, and created_at.
- Code [Luis]: Implement ActionArgumentModel with FK to actions, name, arg_type, requirement, defaults/min/max/regex, position, and constraints.
- Code [Luis]: Implement LifecyclePlanModel with identity fields, phase/state/processing enums, action linkage, DoD fields, policy metadata, and execution placeholders.
- Code [Luis]: Implement PlanProjectLinkModel with plan_id, project_name, alias, read_only, and created_at, plus uniqueness constraint.
- Code [Luis]: Implement PlanArgumentModel and PlanInvariantModel with ordered position fields and constraints.
- Code [Luis]: Define ORM relationships with ordering (order_by=position) and cascade rules for argument/invariant collections.
- Code [Luis]: Implement to_domain() and from_domain() mappers for each model with ULID validation, enum conversion, and timestamp normalization.
- Code [Luis]: Add repository-facing helpers for filtering by namespace/phase/state and eager-load action arguments + plan links.
- Docs [Luis]: Update ORM mapping notes in docs/reference/database_schema.md with model field mapping table.
- Tests (Behave) [Luis]: Add scenarios for ORM round-trip serialization, enum conversions, and ordered argument persistence.
- Tests (Robot) [Luis]: Add Robot test that loads a plan and asserts field mapping correctness.
- Tests (ASV) [Luis]: Add asv/benchmarks/orm_mapping_bench.py for Action/Plan mapping throughput.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(models): add action and lifecycle plan ORM models".
COMMIT (Owner: Jeff | Group: A5.gamma) - Commit message: "feat(repo): add action and lifecycle plan repositories" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Define repository interfaces in src/cleveragents/domain/repositories/ for ActionRepository and PlanRepository (methods + expected errors).
- Code [Jeff]: Implement ActionRepository CRUD with deterministic ordering (created_at) and filters (namespace, state, automation_profile).
- Code [Jeff]: Implement ActionRepository persistence for arguments + invariants with ordered position preservation.
- Code [Jeff]: Implement PlanRepository CRUD with filters (phase/state/project_name/action_name) and lookup by namespaced_name.
- Code [Jeff]: Implement PlanRepository persistence for plan_projects, plan_arguments, plan_invariants with ordered retrieval.
- Code [Jeff]: Add retry decorator to repositories; retry only on OperationalError, never on IntegrityError.
- Code [Jeff]: Add pagination parameters (limit, offset) with default ordering for list queries.
- Docs [Jeff]: Document repository interfaces, error types, and pagination guidance.
- Tests (Behave) [Jeff]: Add scenarios for repository create/get/list/update/delete guardrails, including action argument round-trips.
- Tests (Robot) [Jeff]: Add Robot test that exercises repository through service layer.
- Tests (ASV) [Jeff]: Add asv/benchmarks/repository_query_bench.py for list + filter performance.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(repo): add action and lifecycle plan repositories".
COMMIT (Owner: Luis | Group: A5.gamma) - Commit message: "feat(service): persist plan lifecycle via repositories" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Update PlanLifecycleService to use repositories instead of in-memory dicts.
- Code [Luis]: Replace in-memory action/plan maps with repository lookups in get_action, get_plan, and list helpers.
- Code [Luis]: Persist action creation with arguments/invariants and enforce namespaced_name uniqueness.
- Code [Luis]: Persist plan creation with project link metadata (alias/read_only) and store plan_arguments/plan_invariants in same transaction.
- Code [Luis]: Wrap transitions in UnitOfWork transactions and map DB errors to domain errors (duplicate names, missing action).
- Code [Luis]: Add optimistic guards for phase transitions (validate phase/state before update; reload on conflict).
- Docs [Luis]: Update service docs to reflect persistence and remove in-memory notes.
- Tests (Behave) [Luis]: Add scenarios for persisted lifecycle transitions and error handling (duplicate names, invalid transitions).
- Tests (Robot) [Luis]: Add end-to-end test that restarts the app and re-reads plan state.
- Tests (ASV) [Luis]: Add asv/benchmarks/plan_lifecycle_service_bench.py for persistence operations.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(service): persist plan lifecycle via repositories".
COMMIT (Owner: Luis | Group: A5.gamma) - Commit message: "feat(di): wire lifecycle repos and services" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Register ActionRepository + PlanRepository in application/container.py and UnitOfWork.
- Code [Luis]: Register PlanLifecycleService with repository dependencies and settings in container.
- Code [Luis]: Inject lifecycle service into CLI commands; remove direct service instantiation in action.py and plan.py.
- Code [Luis]: Add container wiring tests to ensure singleton lifetimes are correct and repositories share UoW session.
- Docs [Luis]: Update DI wiring notes in docs/architecture/decisions/adr-003.md.
- Tests (Behave) [Luis]: Add scenarios that use container wiring for lifecycle commands.
- Tests (Robot) [Luis]: Add Robot smoke test verifying CLI uses persisted service.
- Tests (ASV) [Luis]: Add asv/benchmarks/di_container_bench.py for container resolution overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(di): wire lifecycle repos and services".
COMMIT (Owner: Rui | Group: A5.tests) - Commit message: "test(persistence): add plan/action persistence suites" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Tests (Behave) [Rui]: Add plan persistence scenarios (create, update phase/state, list filters, plan tree, concurrency).
- Tests (Behave) [Rui]: Add action persistence scenarios (create, list available, archive guard, action arguments persisted).
- Tests (Robot) [Rui]: Add plan persistence E2E (full lifecycle, restart persistence, concurrent CLI access).
- Docs [Rui]: Update docs/development/testing.md with persistence suites and nox commands.
- Tests (ASV) [Rui]: Add asv/benchmarks/persistence_suites_bench.py for DB read/write baselines.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "test(persistence): add plan/action persistence suites".

Parallel Group A5.legacy: Remove legacy plan build/apply path (M1-critical)

COMMIT (Owner: Jeff | Group: A5.legacy) - Commit message: "refactor(plan): remove legacy plan service and CLI" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Remove PlanService usage from CLI (plan tell/build/apply/new/current/list/cd/continue) and delete command handlers from src/cleveragents/cli/commands/plan.py.
- Code [Jeff]: Remove or quarantine legacy plan_service.py, plan_legacy.py, and legacy CLI helpers; add explicit NotImplementedError where needed.
- Code [Jeff]: Remove PlanService wiring from src/cleveragents/application/container.py and any references from cli/commands/auto_debug.py.
- Code [Jeff]: Rename plan lifecycle-apply to plan apply and update command wiring once legacy apply is removed.
- Code [Jeff]: Remove or archive legacy PlanModel/PlanStatus DB tables if unused by v3; document migration path.
- Docs [Jeff]: Update CLI docs to list only v3 lifecycle commands and new plan use/execute/apply flows.
- Tests (Behave) [Jeff]: Remove/replace legacy scenarios with v3 equivalents and adjust coverage expectations.
- Tests (Robot) [Jeff]: Remove legacy robot suites and add v3 replacements where needed.
- Tests (ASV) [Jeff]: Update asv suite to remove legacy plan benchmarks and add v3 lifecycle baseline benchmark.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "refactor(plan): remove legacy plan service and CLI".

Parallel Group A6: Automation Profiles Foundation [Jeff + Luis] (M1-critical; depends on A5 persistence) PARALLEL SUBTRACK A6.core [Jeff]: Profile model + built-ins + schema PARALLEL SUBTRACK A6.service [Luis]: Profile resolution + precedence PARALLEL SUBTRACK A6.cli [Rui]: CLI commands for profiles SEQUENTIAL MERGE NOTE: A6.core must land before A6.service/cli; A6.service must land before gating integration in Section 6.

COMMIT (Owner: Jeff | Group: A6.core) - Commit message: "feat(domain): add automation profile model and built-ins" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add AutomationProfile model with threshold fields (phase transitions, decision autonomy, child plan spawn, self-repair, apply gating) and validation for 0.0-1.0 ranges.
- Code [Jeff]: Add built-in profiles (manual, review, supervised, full-auto, etc.) per spec with constant definitions and stable IDs.
- Code [Jeff]: Add YAML schema for automation profiles under docs/schema/automation_profile.schema.yaml and loader helper.
- Docs [Jeff]: Add docs/reference/automation_profiles.md describing built-ins and threshold semantics.
- Tests (Behave) [Jeff]: Add scenarios for profile validation and built-in defaults.
- Tests (Robot) [Jeff]: Add Robot test that loads each built-in profile and prints summary.
- Tests (ASV) [Jeff]: Add asv/benchmarks/automation_profile_bench.py for profile validation.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(domain): add automation profile model and built-ins".
COMMIT (Owner: Luis | Group: A6.service) - Commit message: "feat(service): resolve automation profiles with precedence" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add AutomationProfileService to resolve profiles with precedence (plan > action > project > global).
- Code [Luis]: Add persistence table automation_profiles (namespaced name PK) and repository with list/show/update.
- Code [Luis]: Add config key core.automation_profile and env var override for global default.
- Docs [Luis]: Update docs/reference/config.md with automation profile defaults and override behavior.
- Tests (Behave) [Luis]: Add scenarios for precedence resolution and missing profile errors.
- Tests (Robot) [Luis]: Add Robot config smoke test for global profile override.
- Tests (ASV) [Luis]: Add asv/benchmarks/automation_profile_resolution_bench.py for resolution latency.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(service): resolve automation profiles with precedence".
COMMIT (Owner: Rui | Group: A6.cli) - Commit message: "feat(cli): add automation-profile commands" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Rui]: Implement agents automation-profile add/remove/list/show commands with YAML config input.
- Code [Rui]: Add --automation-profile to plan use and output profile in plan status.
- Docs [Rui]: Update CLI reference with automation-profile command examples.
- Tests (Behave) [Rui]: Add CLI scenarios for profile add/list/show/remove.
- Tests (Robot) [Rui]: Add Robot CLI tests for automation-profile commands.
- Tests (ASV) [Rui]: Add asv/benchmarks/automation_profile_cli_bench.py for CLI parsing.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "feat(cli): add automation-profile commands".

M1 SUCCESS CRITERIA (Day 7 MVP - source code only):

Action created from YAML config and persisted (namespaced name, invariants, automation profile).
Project created and linked to a local git-checkout resource.
Plan use -> strategize -> execute -> apply completes with sandbox isolation and diff review.
Tool-based change tracking produces a ChangeSet and applies to the repo after approval.
nox passes with coverage >=97% on the MVP end-to-end path.

Section 4: Projects & Resources [WORKSTREAM B - Hamza Lead]

Target: Milestone M2 (+10 days) Week 1-2 focus: local source code only (git-checkout + fs-directory). Database, API, and remote resources are schema-only stubs for future work.

Parallel Group B1: Resource Registry Core [Hamza + Jeff] (can start after A5.alpha migrations are available) SEQUENTIAL NOTE: B1 domain models can start immediately; B1 DB migrations must rebase on the latest Alembic head after A5.alpha to keep a linear migration chain.

COMMIT (Owner: Hamza | Group: B1.core) - Commit message: "feat(domain): add resource type spec and resource model" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Create src/cleveragents/domain/models/core/resource_type.py with ResourceTypeSpec, ResourceTypeArgument, ResourceKind (physical/virtual), and SandboxStrategy enum.
- Code [Hamza]: Add resource type fields: user_addable, allowed_parents, allowed_children, auto_discover, handler reference, and sandbox_strategy default.
- Code [Hamza]: Add Resource and ResourceRef models with ULID, optional namespaced name, type name, location, description, sandbox strategy, read_only, and metadata.
- Code [Hamza]: Add validators for namespaced naming, ULID format, and parent/child DAG sanity (no self loops, no duplicate edges, type compatibility).
- Code [Hamza]: Add docs/schema/resource_type.schema.yaml with CLI argument definitions, parent/child constraints, and handler metadata.
- Code [Hamza]: Add resource type YAML loader in src/cleveragents/resource/schema.py with version guard and clear error messages.
- Docs [Hamza]: Add docs/reference/resource_model.md with examples for git-checkout and fs-directory resources plus physical/virtual notes.
- Tests (Behave) [Hamza]: Add scenarios validating ULID format, namespace rules, allowed parent/child type checks, and sandbox strategy defaults.
- Tests (Robot) [Hamza]: Add Robot test that loads a ResourceTypeSpec YAML fixture and validates it.
- Tests (ASV) [Hamza]: Add asv/benchmarks/resource_model_bench.py for resource validation + DAG checks.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(domain): add resource type spec and resource model".
COMMIT (Owner: Hamza | Group: B1.core) - Commit message: "feat(resource): add built-in resource type configs" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add built-in resource type YAML configs under resources/types/ (git-checkout, fs-directory, fs-file) with sandbox strategy defaults and CLI argument specs.
- Code [Hamza]: Add bootstrap registration in ResourceRegistryService (register built-ins on startup if missing; idempotent).
- Code [Hamza]: Add mapping table from built-in type to handler/sandbox strategy and surface in resource type list output.
- Docs [Hamza]: Add docs/reference/resource_types_builtin.md with per-type flags and examples.
- Tests (Behave) [Hamza]: Add scenarios ensuring built-in types exist and register idempotently.
- Tests (Robot) [Hamza]: Add Robot test that lists resource types and asserts built-ins are present.
- Tests (ASV) [Hamza]: Add asv/benchmarks/resource_type_bootstrap_bench.py for registration overhead.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(resource): add built-in resource type configs".
COMMIT (Owner: Hamza | Group: B1.core) - Commit message: "feat(domain): add project model v3 with linked resources" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add Project, ProjectResourceLink, ProjectValidationSummary (derived from validation attachments), and ProjectContextPolicy models using namespaced name as the unique identifier (no ULID per spec).
- Code [Hamza]: Add fields for invariants, invariant_actor, automation_profile, and context_views (strategize/execute/apply/default).
- Code [Hamza]: Add validation for resource link overrides (read_only flags, alias uniqueness, resource existence).
- Code [Hamza]: Add helpers to compute effective invariants and automation profile (project defaults).
- Docs [Hamza]: Add docs/reference/project_model.md describing resource linking, validation attachments, and context view policies.
- Tests (Behave) [Hamza]: Add scenarios for project model validation, link overrides, and context view inheritance.
- Tests (Robot) [Hamza]: Add Robot test that creates a Project object and prints serialized output.
- Tests (ASV) [Hamza]: Add asv/benchmarks/project_model_bench.py for serialization/validation performance.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(domain): add project model v3 with linked resources".
COMMIT (Owner: Jeff | Group: B1.core) - Commit message: "feat(db): add resource registry tables" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Add Alembic migration for resource_types, resources, and resource_edges tables with naming conventions.
- Code [Jeff]: Define resource_types columns: name, namespace, description, resource_kind, sandbox_strategy, user_addable, handler_ref, args_schema_json, allowed_parent_types_json, allowed_child_types_json, auto_discover_json, timestamps.
- Code [Jeff]: Define resources columns: ULID PK, namespaced_name, namespace, type_name, resource_kind, location, description, read_only, metadata_json, sandbox_strategy, timestamps.
- Code [Jeff]: Define resource_edges columns: parent_id, child_id, created_at, with uniqueness constraint and FK cascade rules.
- Code [Jeff]: Add indexes on resources.namespaced_name, resources.namespace, resources.type_name, and resource_edges.parent_id/child_id.
- Docs [Jeff]: Update docs/reference/database_schema.md with resource registry tables and constraints.
- Tests (Behave) [Jeff]: Add migration scenarios verifying tables, indices, and edge uniqueness.
- Tests (Robot) [Jeff]: Add Robot migration smoke test using nox -s db_migrate.
- Tests (ASV) [Jeff]: Add asv/benchmarks/resource_registry_migration_bench.py for migration baseline.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(db): add resource registry tables".

Parallel Group B2: Project Persistence + Services [Hamza + Luis] (depends on B1 domain models)

COMMIT (Owner: Jeff | Group: B2.persistence) - Commit message: "feat(db): add projects and project links tables" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Add Alembic migration skeleton with explicit down_revision to latest A5.alpha head.
- Code [Jeff]: Define projects table with namespaced_name PK, namespace, description, automation_profile, invariant_actor, invariants_json, context_policy_json, tags_json, created_by, timestamps.
- Code [Jeff]: Add projects constraints for non-empty names, namespace/name derivation consistency, and unique namespaced_name.
- Code [Jeff]: Define project_resource_links table with link_id ULID, project_name FK, resource_id FK, alias, read_only, created_at.
- Code [Jeff]: Add uniqueness constraint on (project_name, resource_id) and index on (project_name, alias) for fast lookups.
- Code [Jeff]: Add indexes on project_resource_links.project_name and project_resource_links.resource_id for joins.
- Docs [Jeff]: Document project table schema and link semantics in docs/reference/database_schema.md.
- Tests (Behave) [Jeff]: Add migration scenarios verifying project tables, FK constraints, and unique link enforcement.
- Tests (Robot) [Jeff]: Add Robot test that inserts a project and link row and validates alias uniqueness.
- Tests (ASV) [Jeff]: Add asv/benchmarks/project_migration_bench.py for migration baseline.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(db): add projects and project links tables".
COMMIT (Owner: Hamza | Group: B2.persistence) - Commit message: "feat(repo): add resource repositories" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement ResourceTypeRepository CRUD and ResourceRepository CRUD with DAG edge helpers.
- Code [Hamza]: Add methods for tree traversal, child discovery queries, and name/ULID resolution.
- Code [Hamza]: Add repository guardrails for preventing cycles and duplicate edges.
- Docs [Hamza]: Document repository interfaces in docs/reference/repositories.md.
- Tests (Behave) [Hamza]: Add repository scenarios for create/get/list/tree and cycle rejection.
- Tests (Robot) [Hamza]: Add Robot test exercising tree output ordering.
- Tests (ASV) [Hamza]: Add asv/benchmarks/resource_repository_bench.py for tree query performance.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(repo): add resource repositories".
COMMIT (Owner: Hamza | Group: B2.persistence) - Commit message: "feat(repo): add project repositories" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement ProjectRepository and ProjectResourceLinkRepository with namespace filtering and name-based lookup.
- Code [Hamza]: Add methods to list project context policies and derived validation attachment summaries for linked resources.
- Docs [Hamza]: Update repository docs with project link examples and validation attachment notes.
- Tests (Behave) [Hamza]: Add scenarios for project create/link/unlink and validation attachment summaries.
- Tests (Robot) [Hamza]: Add Robot test that links two resources to one project.
- Tests (ASV) [Hamza]: Add asv/benchmarks/project_repository_bench.py for link/unlink performance.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(repo): add project repositories".
COMMIT (Owner: Hamza | Group: B2.service) - Commit message: "feat(service): add resource registry service" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement ResourceRegistryService for register/remove/show/tree operations with name/ULID resolution.
- Code [Hamza]: Add auto-discovery hook that delegates to resource handlers (git-checkout for MVP).
- Code [Hamza]: Add validation that resource type supports parent/child linkage before linking.
- Docs [Hamza]: Add docs/reference/resource_registry.md describing API behavior and error cases.
- Tests (Behave) [Hamza]: Add scenarios for register/remove/show/tree behavior and auto-discovery.
- Tests (Robot) [Hamza]: Add Robot test that registers a git-checkout and inspects child count.
- Tests (ASV) [Hamza]: Add asv/benchmarks/resource_registry_service_bench.py for register/show performance.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(service): add resource registry service".
COMMIT (Owner: Luis | Group: B2.service) - Commit message: "feat(service): add project service v3" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Implement ProjectService create/list/show/delete/link/unlink methods using repositories.
- Code [Luis]: Add validation attachment helpers (read-only listing of validation attachments for linked resources) and context policy setters for project views.
- Code [Luis]: Enforce read-only resource links and project-level invariant actor defaults.
- Docs [Luis]: Update docs/reference/project_service.md with usage examples and error cases.
- Tests (Behave) [Luis]: Add scenarios for project create/link/unlink/context policy + validation attachment visibility.
- Tests (Robot) [Luis]: Add Robot test that creates project and links a resource.
- Tests (ASV) [Luis]: Add asv/benchmarks/project_service_bench.py for link/unlink performance.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(service): add project service v3".

Parallel Group B3: CLI Commands [Rui] (depends on B2 services)

COMMIT (Owner: Rui | Group: B3.cli) - Commit message: "feat(cli): add resource type commands" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Rui]: Add agents resource type add/remove/list/show commands with YAML config input and schema validation.
- Code [Rui]: Implement --update behavior and error on name conflicts per spec.
- Code [Rui]: Wire resource type add to ResourceTypeSpec loader with clear error output and schema version guard.
- Docs [Rui]: Update CLI reference with resource type examples and expected output columns.
- Tests (Behave) [Rui]: Add scenarios for resource type lifecycle and invalid schema handling.
- Tests (Robot) [Rui]: Add Robot suite robot/resource_type_cli.robot.
- Tests (ASV) [Rui]: Add asv/benchmarks/resource_type_cli_bench.py for config parsing overhead.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "feat(cli): add resource type commands".
COMMIT (Owner: Rui | Group: B3.cli) - Commit message: "feat(cli): add resource commands" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Rui]: Add agents resource add/remove/list/show/tree commands with type-specific flags and name/ULID resolution.
- Code [Rui]: Implement resource inspect --tree/--file per spec for resource introspection.
- Code [Rui]: Add resource link-child and resource unlink-child commands for DAG maintenance.
- Docs [Rui]: Update CLI reference with resource examples (git-checkout, fs-directory) and output columns.
- Tests (Behave) [Rui]: Add scenarios for resource registration, list filters, tree rendering, and link-child constraints.
- Tests (Robot) [Rui]: Add Robot suite robot/resource_cli.robot.
- Tests (ASV) [Rui]: Add asv/benchmarks/resource_cli_bench.py for command parsing and list output.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "feat(cli): add resource commands".
COMMIT (Owner: Rui | Group: B3.cli) - Commit message: "feat(cli): add project commands" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Rui]: Add agents project create/show/list/delete/link-resource/unlink-resource commands using namespaced project names.
- Code [Rui]: Add project context set/show commands (context views per phase) and ensure output includes linked resources + validation attachments.
- Docs [Rui]: Update CLI reference with project examples and validation attachment visibility (via agents validation attach).
- Tests (Behave) [Rui]: Add scenarios for project create/link/unlink/context policies and validation display.
- Tests (Robot) [Rui]: Add Robot suite robot/project_cli.robot.
- Tests (ASV) [Rui]: Add asv/benchmarks/project_cli_bench.py for command parsing and list output.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "feat(cli): add project commands".

Parallel Group B3.cleanup: Legacy Project Removal [Jeff] (after B3.cli lands)

COMMIT (Owner: Jeff | Group: B3.cleanup) - Commit message: "refactor(project): remove legacy project init/status commands" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Remove legacy agents project init/status/clean/file-filter commands from src/cleveragents/cli/commands/project.py.
- Code [Jeff]: Remove .cleveragents directory bootstrap logic from legacy ProjectService and deprecate ProjectSettings fields tied to local init.
- Code [Jeff]: Update src/cleveragents/application/container.py to stop wiring legacy ProjectService once v3 service is in place.
- Code [Jeff]: Remove legacy src/cleveragents/domain/models/core/project.py in favor of v3 project model and update imports.
- Docs [Jeff]: Remove references to agents project init from CLI docs and point to agents project create + agents init (global) flows.
- Tests (Behave) [Jeff]: Remove/replace legacy project init scenarios with v3 project create scenarios.
- Tests (Robot) [Jeff]: Remove legacy project init Robot suites and add v3 replacements if missing.
- Tests (ASV) [Jeff]: Add asv/benchmarks/project_cli_cleanup_bench.py for CLI help/rendering baseline after removal.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "refactor(project): remove legacy project init/status commands".

Parallel Group B4: Sandboxing [Luis + Jeff] (depends on resource registry + project links)

COMMIT (Owner: Luis | Group: B4.sandbox) - Commit message: "feat(sandbox): add sandbox strategy interface and manager" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add SandboxStrategy protocol, SandboxRef, SandboxManager, and SandboxRegistry with per-resource sandboxes.
- Code [Luis]: Implement lazy sandbox creation, cleanup hooks, and plan-scoped retention policy stubs.
- Code [Luis]: Add sandbox path rewriting helper for tool execution and MCP adapters.
- Docs [Luis]: Add docs/reference/sandbox.md describing lifecycle, APIs, and path rewriting rules.
- Tests (Behave) [Luis]: Add scenarios for sandbox manager creation, cleanup, and path rewrite behavior.
- Tests (Robot) [Luis]: Add Robot test that creates a sandbox and verifies filesystem isolation.
- Tests (ASV) [Luis]: Add asv/benchmarks/sandbox_manager_bench.py for sandbox creation overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(sandbox): add sandbox strategy interface and manager".
COMMIT (Owner: Luis | Group: B4.sandbox) - Commit message: "feat(sandbox): implement git_worktree strategy" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Implement git worktree creation, checkout, and cleanup for git-checkout resources.
- Code [Luis]: Add safe fallback for repositories without clean worktrees and clear error messages.
- Code [Luis]: Record sandbox metadata (worktree path, branch, base commit) for rollback.
- Docs [Luis]: Update sandbox doc with git_worktree usage and rollback behavior.
- Tests (Behave) [Luis]: Add scenarios for git worktree sandbox creation and rollback.
- Tests (Robot) [Luis]: Add Robot test that modifies sandbox and verifies original repo unchanged.
- Tests (ASV) [Luis]: Add asv/benchmarks/git_worktree_bench.py for sandbox creation time.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(sandbox): implement git_worktree strategy".
COMMIT (Owner: Hamza | Group: B4.sandbox) - Commit message: "feat(resource): add git-checkout handler and discovery" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add git-checkout handler that validates repo path, branch, and read_only flags.
- Code [Hamza]: Implement child resource discovery for fs-directory children (schema-only for now) and record ULID-only children.
- Code [Hamza]: Add sandbox strategy mapping for git-checkout and path normalization helpers.
- Docs [Hamza]: Document git-checkout handler behavior in docs/reference/resources_git.md.
- Tests (Behave) [Hamza]: Add scenarios for handler validation and discovery counts.
- Tests (Robot) [Hamza]: Add Robot test registering a git repo and asserting discovered children.
- Tests (ASV) [Hamza]: Add asv/benchmarks/git_discovery_bench.py for discovery cost.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(resource): add git-checkout handler and discovery".
COMMIT (Owner: Luis | Group: B4.sandbox) - Commit message: "feat(sandbox): add copy_on_write strategy stub" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add copy_on_write strategy skeleton with TODOs for large-project optimization.
- Code [Luis]: Raise explicit NotImplementedError with guidance on when it will be available.
- Docs [Luis]: Document that copy_on_write is stubbed for post-M1 work.
- Tests (Behave) [Luis]: Add scenario that selecting copy_on_write raises NotImplementedError with clear message.
- Tests (Robot) [Luis]: Add Robot test verifying stub error output.
- Tests (ASV) [Luis]: Add asv/benchmarks/sandbox_stub_bench.py (baseline no-op).
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(sandbox): add copy_on_write strategy stub".

M2 MERGE GATE:

Register a git-checkout resource and link it to a project via CLI.
Create a sandbox for the linked resource and verify isolation via tests.
Project context commands and validation attachment visibility work and persist.
nox passes with coverage >=97%.

M2 SUCCESS CRITERIA:

Resource registry supports resource types, resources, and DAG links with persistence (tables + repositories).
Projects can link/unlink resources with CLI commands for resource types/resources/projects (list/show/tree included).
Validation attachments (via agents validation attach/detach) appear in project show outputs.
Git-checkout sandbox isolates changes; copy_on_write strategy returns clear NotImplementedError for fs-directory (documented).
Resource/project services are DI-wired and exercised by Behave + Robot suites.
nox passes with coverage >=97% across resource/project suites.

Section 5: Actors, Skills & Tool Execution [WORKSTREAM C - Aditya Lead]

Target: Milestone M3 (+14 days)

Week 2 focus: Actor YAML, compilation, skills, and tool-based change tracking.

Parallel Group C0: Tool Registry + Validation System [Jeff + Luis] (start Day 5; precedes C1/C3) PARALLEL SUBTRACK C0.domain [Jeff]: Tool + Validation domain models + schemas PARALLEL SUBTRACK C0.registry [Luis]: Tool registry persistence + repositories PARALLEL SUBTRACK C0.cli [Rui]: CLI commands for tools/validations SEQUENTIAL MERGE NOTE: C0.domain must land before C0.registry/cli; C0.registry before C3 context wiring. C0.registry migrations must rebase after A5.alpha; C0.binding should wait for B1.core resource type constraints to validate bindings.

COMMIT (Owner: Jeff | Group: C0.domain) - Commit message: "feat(tool): add tool and validation domain models" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add Tool model in src/cleveragents/domain/models/core/tool.py with namespaced name, description, source type, input/output JSON schema, and capability metadata (read/write/checkpointable).
- Code [Jeff]: Add ResourceBinding model with slot definitions and binding modes (context, static, parameter), plus required/optional flags.
- Code [Jeff]: Add Validation model as Tool subtype with mode, wraps, and transform fields; enforce read-only constraints.
- Code [Jeff]: Add enums for ToolSource, ToolType (tool/validation), and ValidationMode.
- Code [Jeff]: Add docs/schema/tool.schema.yaml and docs/schema/validation.schema.yaml with required fields, wraps/transform rules, and resource binding definitions.
- Code [Jeff]: Add YAML loader in src/cleveragents/tool/schema.py that validates schema version, normalizes keys, and returns Tool/Validation domain models.
- Code [Jeff]: Add example configs under examples/tools/ and examples/validations/ (plain tool, validation, wrapped validation) for tests.
- Docs [Jeff]: Add docs/reference/tool_model.md and docs/reference/validation_model.md with examples.
- Tests (Behave) [Jeff]: Add features/tool_model.feature for schema validation, resource binding rules, validation constraints, and YAML loader errors.
- Tests (Robot) [Jeff]: Add robot/tool_model.robot smoke tests for model creation.
- Tests (ASV) [Jeff]: Add asv/benchmarks/tool_model_bench.py for schema validation throughput (model + YAML loader).
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(tool): add tool and validation domain models".
COMMIT (Owner: Luis | Group: C0.registry) - Commit message: "feat(tool): add tool registry persistence" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add DB tables for tools, tool_bindings, and validation_attachments with indexes on namespaced name and type.
- Code [Luis]: Define tools columns: namespaced_name, namespace, tool_type, source, description, input_schema_json, output_schema_json, capability_json, metadata_json, yaml_text, timestamps.
- Code [Luis]: Define tool_bindings columns: binding_id ULID, tool_name, slot_name, binding_mode, resource_type, required, static_resource_id, static_resource_name, timestamps.
- Code [Luis]: Define validation_attachments columns: attachment_id ULID, validation_name, resource_id, optional project_name, optional plan_id, args_json, timestamps.
- Code [Luis]: Add uniqueness constraints for tools.namespaced_name and tool_bindings(tool_name, slot_name); index validation_attachments.resource_id.
- Code [Luis]: Implement ToolRepository + ValidationAttachmentRepository with list/show filters and eager-loading of bindings.
- Code [Luis]: Add ToolRegistryService for register/update/remove/list/show with name conflict checks and tool/validation type enforcement.
- Docs [Luis]: Update docs/reference/database_schema.md with tool/validation tables.
- Tests (Behave) [Luis]: Add features/tool_registry.feature for register/update/remove and validation-only constraints.
- Tests (Robot) [Luis]: Add robot/tool_registry.robot for list/show smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/tool_registry_bench.py for registry list performance.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(tool): add tool registry persistence".
COMMIT (Owner: Jeff | Group: C0.binding) - Commit message: "feat(tool): add resource binding resolution" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Implement binding resolution for contextual, static, and parameter bindings with type compatibility checks.
- Code [Jeff]: Add resolution helpers for resource name/ULID lookup and project-scoped filtering.
- Docs [Jeff]: Add docs/reference/tool_bindings.md with resolution order and examples.
- Tests (Behave) [Jeff]: Add binding resolution scenarios (context vs static vs parameter).
- Tests (Robot) [Jeff]: Add Robot test resolving a bound resource by name.
- Tests (ASV) [Jeff]: Add asv/benchmarks/binding_resolution_bench.py for resolution latency.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(tool): add resource binding resolution".
COMMIT (Owner: Rui | Group: C0.cli) - Commit message: "feat(cli): add tool and validation commands" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Rui]: Implement agents tool add/remove/list/show with YAML config input and --type filter.
- Code [Rui]: Implement agents validation add/attach/detach commands and enforce validation-only name use.
- Code [Rui]: Support validation attach --project/--plan flags and store attachment args.
- Docs [Rui]: Update CLI reference with tool/validation commands and output format.
- Tests (Behave) [Rui]: Add CLI scenarios for tool/validation registration and attachment.
- Tests (Robot) [Rui]: Add Robot CLI suites for tool and validation commands.
- Tests (ASV) [Rui]: Add asv/benchmarks/tool_cli_bench.py for CLI parsing overhead.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "feat(cli): add tool and validation commands".

Parallel Group C0.skill: Skill Registry & YAML [Aditya + Jeff + Luis + Rui] (depends on C0.domain + C0.registry; must land before C3.protocol) PARALLEL SUBTRACK C0.skill.schema [Aditya]: Skill YAML schema + examples PARALLEL SUBTRACK C0.skill.domain [Jeff]: Skill domain model + resolver PARALLEL SUBTRACK C0.skill.registry [Luis]: Skill persistence + service PARALLEL SUBTRACK C0.skill.cli [Rui]: CLI commands + output formatting SEQUENTIAL MERGE NOTE: C0.skill.domain must land before C0.skill.registry/C0.skill.cli to avoid dual representations.

COMMIT (Owner: Aditya | Group: C0.skill.schema) - Commit message: "docs(skill): add skill yaml schema and examples" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Docs [Aditya]: Author docs/schema/skill.schema.yaml with versioning, required fields, and explicit type constraints for tool refs, inline tools, includes, and MCP sources.
- Docs [Aditya]: Add skill YAML examples under examples/skills/ (single-tool, composed, inline tool, validation-only, MCP-backed).
- Code [Aditya]: Add schema loader in src/cleveragents/skills/schema.py that validates schema version, normalizes keys, and returns typed data.
- Code [Aditya]: Add clear validation errors for missing tools, recursive includes, and invalid namespaced names.
- Tests (Behave) [Aditya]: Add features/skill_schema.feature scenarios validating each example and invalid cases.
- Tests (Robot) [Aditya]: Add robot/skill_schema.robot to load and validate every example.
- Tests (ASV) [Aditya]: Add asv/benchmarks/skill_schema_bench.py for schema validation throughput.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "docs(skill): add skill yaml schema and examples".
COMMIT (Owner: Jeff | Group: C0.skill.domain) - Commit message: "feat(skill): add skill domain model and resolver" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Add Skill, SkillItem, SkillToolRef, SkillInclude, and SkillInlineTool models in src/cleveragents/domain/models/core/skill.py with namespaced naming rules.
- Code [Jeff]: Implement SkillResolver to flatten includes into ordered tool lists, de-duplicate tools, and reject cycles with path traces.
- Code [Jeff]: Add Skill.resolve_tools() returning resolved tool/validation names plus inline tool definitions for compiler use.
- Docs [Jeff]: Add docs/reference/skill_model.md and docs/reference/skill_resolution.md with resolution order examples.
- Tests (Behave) [Jeff]: Add features/skill_resolution.feature for include ordering, de-dupe rules, and cycle detection.
- Tests (Robot) [Jeff]: Add robot/skill_resolution.robot smoke tests for resolver output.
- Tests (ASV) [Jeff]: Add asv/benchmarks/skill_resolution_bench.py for resolver performance.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(skill): add skill domain model and resolver".
COMMIT (Owner: Luis | Group: C0.skill.registry) - Commit message: "feat(skill): add skill registry persistence" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add skills and skill_items tables (namespaced name PK, description, source, yaml_text, timestamps) with indexes on namespace/name.
- Code [Luis]: Implement SkillRepository CRUD + list filters and SkillRegistryService with add/update/remove/show/list.
- Code [Luis]: Enforce referential integrity for included skills and tool references at registration time.
- Docs [Luis]: Add docs/reference/skill_registry.md with registration and update behavior.
- Tests (Behave) [Luis]: Add features/skill_registry.feature for add/update/remove and invalid include cases.
- Tests (Robot) [Luis]: Add robot/skill_registry.robot CLI/service smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/skill_registry_bench.py for registry list performance.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(skill): add skill registry persistence".
COMMIT (Owner: Rui | Group: C0.skill.cli) - Commit message: "feat(cli): add skill commands" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Rui]: Implement agents skill add/remove/list/show/tools with YAML config input and --namespace filter.
- Code [Rui]: Ensure skill tools shows resolved tool list, inline tool IDs, and validation nodes.
- Docs [Rui]: Update CLI reference with skill commands, examples, and output fields.
- Tests (Behave) [Rui]: Add CLI scenarios for skill add/show/tools/list/remove.
- Tests (Robot) [Rui]: Add robot/skill_cli.robot for end-to-end CLI flows.
- Tests (ASV) [Rui]: Add asv/benchmarks/skill_cli_bench.py for config parsing overhead.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "feat(cli): add skill commands".

Parallel Group C0.runtime: Tool Lifecycle Runtime [Jeff] (depends on C0.domain + C0.registry; must land before C3.context)

COMMIT (Owner: Jeff | Group: C0.runtime) - Commit message: "feat(tool): add tool lifecycle runtime" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Implement ToolRuntime/ToolInstance interfaces with discover/activate/execute/deactivate hooks and lifecycle state tracking.
- Code [Jeff]: Add ToolExecutionContext with resolved resource bindings, sandbox paths, plan metadata, and cancellation token.
- Code [Jeff]: Add lifecycle cache with per-plan activation reuse and guaranteed deactivate on plan completion/cancel.
- Code [Jeff]: Enforce tool capability flags (read-only/writes/checkpointable) and read-only plan gating at runtime.
- Docs [Jeff]: Add docs/reference/tool_lifecycle.md describing hook ordering and failure handling.
- Tests (Behave) [Jeff]: Add lifecycle scenarios for activate/execute/deactivate ordering and error propagation.
- Tests (Robot) [Jeff]: Add robot/tool_lifecycle.robot runtime smoke tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/tool_lifecycle_bench.py for lifecycle overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(tool): add tool lifecycle runtime".

Parallel Group C1: Actor Schema & Examples [Aditya + Jeff] (start Day 5; C2 depends on this)

COMMIT (Owner: Aditya | Group: C1.schema) - Commit message: "feat(actor): add actor yaml schema models" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Aditya]: Add schema models (ActorType, NodeType, ContextView, ToolDefinition, RouteDefinition, ActorConfigSchema) with strict validation in src/cleveragents/actor/schema.py.
- Code [Aditya]: Add tool-node schema fields that reference Tool Registry names, including validation nodes, and require input/output schema presence.
- Code [Aditya]: Add YAML load/serialize helpers and schema version guard.
- Docs [Aditya]: Add docs/reference/actors_schema.md with field definitions, tool node semantics, and graph constraints.
- Tests (Behave) [Aditya]: Add features/actor_schema.feature scenarios for validation and topology errors.
- Tests (Robot) [Aditya]: Add robot/actor_schema.robot YAML load smoke test.
- Tests (ASV) [Aditya]: Add asv/benchmarks/actor_schema_bench.py for YAML validation cost.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "feat(actor): add actor yaml schema models".
COMMIT (Owner: Aditya | Group: C1.examples) - Commit message: "docs(actor): add actor yaml examples" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Docs [Aditya]: Add docs/reference/actors_examples.md with strategist, executor, reviewer, tool-only, validation-node, and graph YAML examples.
- Docs [Aditya]: Store example YAML files under examples/actors/ for automated tests.
- Tests (Behave) [Aditya]: Add features/actor_examples.feature to ensure all examples validate.
- Tests (Robot) [Aditya]: Add robot/actor_examples.robot to load each example.
- Tests (ASV) [Aditya]: Add asv/benchmarks/actor_examples_load_bench.py for YAML load throughput.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "docs(actor): add actor yaml examples".

Parallel Group C2: Actor Loading & Compilation [Aditya + Jeff] (depends on C1) PARALLEL SUBTRACK C2.legacy [Jeff]: Remove v2 actor config compatibility (after C1.schema) SEQUENTIAL NOTE: C2.legacy must land before C2.loader/C2.compiler to avoid dual-format support.

COMMIT (Owner: Aditya | Group: C2.loader) - Commit message: "feat(actor): add actor registry and loader" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Aditya]: Implement actor loader/registry with namespaced lookup, cache invalidation, and file discovery in actors/ and examples/actors/.
- Code [Aditya]: Add registry integration with Tool Registry so tool nodes resolve at load time.
- Docs [Aditya]: Add docs/reference/actors_loading.md with discovery rules and namespaces.
- Tests (Behave) [Aditya]: Add features/actor_loading.feature for discovery, duplicates, and namespace lookup.
- Tests (Robot) [Aditya]: Add robot/actor_loading.robot for loader smoke tests.
- Tests (ASV) [Aditya]: Add asv/benchmarks/actor_loading_bench.py for registry load performance.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "feat(actor): add actor registry and loader".
COMMIT (Owner: Jeff | Group: C2.compiler) - Commit message: "feat(actor): compile actor configs to LangGraph" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement ActorCompiler that builds LangGraph for LLM, TOOL, and GRAPH actors with tool node wiring.
- Code [Jeff]: Resolve tool node references through Tool Registry and validate required bindings before compile.
- Docs [Jeff]: Add docs/reference/actors_compilation.md covering compile outputs and error modes.
- Tests (Behave) [Jeff]: Add features/actor_compilation.feature for LLM/GRAPH compilation and tool node wiring.
- Tests (Robot) [Jeff]: Add robot/actor_compilation.robot smoke test compiling all examples.
- Tests (ASV) [Jeff]: Add asv/benchmarks/actor_compilation_bench.py for compilation speed.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(actor): compile actor configs to LangGraph".
COMMIT (Owner: Jeff | Group: C2.refs) - Commit message: "feat(actor): resolve actor references and subgraphs" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement reference resolution, cycle detection, and subgraph wiring for actor refs.
- Code [Jeff]: Ensure cross-namespace reference resolution follows [server:]namespace/name rules.
- Docs [Jeff]: Update docs/reference/actors_compilation.md with reference semantics.
- Tests (Behave) [Jeff]: Add features/actor_reference_resolution.feature for missing/recursive refs.
- Tests (Robot) [Jeff]: Add robot/actor_reference_resolution.robot for subgraph wiring.
- Tests (ASV) [Jeff]: Add asv/benchmarks/actor_reference_bench.py for reference resolution performance.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(actor): resolve actor references and subgraphs".
COMMIT (Owner: Jeff | Group: C2.legacy) - Commit message: "refactor(actor): drop v2 actor config compatibility" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Remove v2 JSON/YAML parsing paths in src/cleveragents/actor/config.py and related template engine usage.
- Code [Jeff]: Ensure only v3 actor YAML schema is accepted; provide clear error message when v2 fields are present.
- Docs [Jeff]: Update docs/reference/actors_loading.md with v3-only note and migration guidance.
- Tests (Behave) [Jeff]: Add scenarios that reject v2 actor config files.
- Tests (Robot) [Jeff]: Add Robot tests that attempt to load v2 configs and assert failure.
- Tests (ASV) [Jeff]: Add asv/benchmarks/actor_schema_reject_bench.py for validation overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "refactor(actor): drop v2 actor config compatibility".

Parallel Group C3: Skill Protocol & Context [Jeff] (critical path; depends on C1)

COMMIT (Owner: Jeff | Group: C3.protocol) - Commit message: "feat(skill): add skill protocol and metadata" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Define Skill protocol interface, SkillMetadata, SkillResult, and SkillError types in src/cleveragents/skills/protocol.py.
- Code [Jeff]: Add SkillDefinition model that references Tool Registry names and optional inline tool definitions.
- Code [Jeff]: Add error mapping helpers to normalize tool failures into SkillError payloads.
- Docs [Jeff]: Add docs/reference/skills_protocol.md describing metadata, tool composition, and JSON schema rules.
- Tests (Behave) [Jeff]: Add features/skill_protocol.feature for metadata validation and error capture.
- Tests (Robot) [Jeff]: Add robot/skill_protocol.robot smoke tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/skill_protocol_bench.py for validation throughput.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(skill): add skill protocol and metadata".
COMMIT (Owner: Jeff | Group: C3.context) - Commit message: "feat(skill): add skill context and registry" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement SkillContext (plan/resource access, sandbox path, change tracker) and SkillRegistry in src/cleveragents/skills/context.py.
- Code [Jeff]: Wire SkillRegistry to Tool Registry for tool resolution and validation node inclusion.
- Code [Jeff]: Add context helpers for resolving bound resources and exposing plan metadata.
- Docs [Jeff]: Add docs/reference/skills_context.md with context fields and helper methods.
- Tests (Behave) [Jeff]: Add features/skill_context.feature for sandboxed access and registry resolution.
- Tests (Robot) [Jeff]: Add robot/skill_context.robot for registry smoke tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/skill_context_bench.py for registry resolution overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(skill): add skill context and registry".
COMMIT (Owner: Jeff | Group: C3.inline) - Commit message: "feat(skill): add inline tool executor" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement inline tool execution with timeouts and restricted environment in src/cleveragents/skills/inline_executor.py.
- Code [Jeff]: Ensure inline tools conform to Tool Registry schema and return structured results.
- Code [Jeff]: Add safeguards for file/network access inside inline tools (local-only for MVP).
- Docs [Jeff]: Add docs/reference/skills_inline.md with safety constraints.
- Tests (Behave) [Jeff]: Add features/skill_inline.feature for execution and timeout handling.
- Tests (Robot) [Jeff]: Add robot/skill_inline.robot for inline tool smoke tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/inline_tool_bench.py for execution overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(skill): add inline tool executor".

Parallel Group C4: Built-in Skills [Jeff + Luis] (depends on C3)

COMMIT (Owner: Jeff | Group: C4.file) - Commit message: "feat(skill): add file operation skills" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement ReadFile, WriteFile, EditFile, and DeleteFile tools with read_only enforcement.
- Code [Jeff]: Register tools in Tool Registry with resource bindings for fs/git resources and sandbox path rewrite.
- Code [Jeff]: Add content size limits and encoding normalization (UTF-8) for file tools.
- Docs [Jeff]: Add docs/reference/skills_file.md with examples and error cases.
- Tests (Behave) [Jeff]: Add features/skill_file_ops.feature for read/write/edit/delete flows.
- Tests (Robot) [Jeff]: Add robot/skill_file_ops.robot for file ops integration.
- Tests (ASV) [Jeff]: Add asv/benchmarks/file_tool_bench.py for read/write throughput.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(skill): add file operation skills".
COMMIT (Owner: Jeff | Group: C4.search) - Commit message: "feat(skill): add directory and search skills" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement ListDir, Glob, and Grep tools with ignore patterns and size limits.
- Code [Jeff]: Register tools in Tool Registry with resource bindings and sandbox awareness.
- Code [Jeff]: Enforce include/exclude glob filters from project context policies.
- Docs [Jeff]: Add docs/reference/skills_search.md with examples.
- Tests (Behave) [Jeff]: Add features/skill_search.feature for listing/globbing/searching.
- Tests (Robot) [Jeff]: Add robot/skill_search.robot for search integration.
- Tests (ASV) [Jeff]: Add asv/benchmarks/search_tool_bench.py for search performance.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(skill): add directory and search skills".
COMMIT (Owner: Luis | Group: C4.git) - Commit message: "feat(skill): add git operation skills" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Implement read-only git tools (status, diff, log, show) for sandboxed repos.
- Code [Luis]: Register git tools in Tool Registry with read-only capability metadata.
- Code [Luis]: Add path guards to ensure git tools only run inside sandbox root.
- Docs [Luis]: Add docs/reference/skills_git.md clarifying no destructive ops in MVP.
- Tests (Behave) [Luis]: Add features/skill_git.feature for git tool outputs.
- Tests (Robot) [Luis]: Add robot/skill_git.robot for git tool integration.
- Tests (ASV) [Luis]: Add asv/benchmarks/git_tool_bench.py for diff/log performance.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(skill): add git operation skills".

Parallel Group C5: Tool Routing & Change Tracking [Luis + Jeff] (depends on C3/C4)

COMMIT (Owner: Luis | Group: C5.model) - Commit message: "feat(change): add ChangeSet models and invocation tracker" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add Change/ChangeSet/ToolInvocation models and SkillInvocationTracker.
- Code [Luis]: Ensure ChangeSet stores resource references, sandbox paths, tool metadata, and timestamps.
- Code [Luis]: Add ChangeSet serialization helper for plan diff output (group by resource).
- Docs [Luis]: Add docs/reference/change_tracking.md describing tool-to-change mapping.
- Tests (Behave) [Luis]: Add features/change_tracking.feature for ChangeSet aggregation.
- Tests (Robot) [Luis]: Add robot/change_tracking.robot for tracker smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/change_tracking_bench.py for invocation tracking overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(change): add ChangeSet models and invocation tracker".
COMMIT (Owner: Jeff | Group: C5.router) - Commit message: "feat(change): add tool router for providers" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement ToolCallRouter for OpenAI/Anthropic/LangChain tool schemas with deterministic IDs.
- Code [Jeff]: Add mapping for tool/validation names and argument schemas based on Tool Registry metadata.
- Code [Jeff]: Add tool-call result normalization to match ToolInvocation schema.
- Docs [Jeff]: Add docs/reference/tool_router.md with provider-specific mappings.
- Tests (Behave) [Jeff]: Add features/tool_router.feature for schema mapping.
- Tests (Robot) [Jeff]: Add robot/tool_router.robot for routing smoke tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/tool_router_bench.py for routing performance.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(change): add tool router for providers".
COMMIT (Owner: Luis | Group: C5.diff) - Commit message: "feat(change): add diff review artifacts" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Implement DiffBuilder and ReviewArtifact models for CLI review.
- Code [Luis]: Add support for multi-resource diffs and per-resource grouping.
- Code [Luis]: Add diff output serializers for rich/plain/json formats.
- Docs [Luis]: Add docs/reference/diff_review.md with output format.
- Tests (Behave) [Luis]: Add features/diff_review.feature for diff generation.
- Tests (Robot) [Luis]: Add robot/diff_review.robot for review artifacts.
- Tests (ASV) [Luis]: Add asv/benchmarks/diff_review_bench.py for diff building performance.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(change): add diff review artifacts".

Parallel Group C6: Validation Pipeline [Luis + Jeff] (depends on C5 and validation attachment config)

COMMIT (Owner: Luis | Group: C6.pipeline) - Commit message: "feat(validation): add validation pipeline and results model" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Implement ValidationCommand, ValidationResult, and ValidationPipeline using Validation attachments from Tool Registry.
- Code [Luis]: Run validations at end of Execute phase only; do not re-run during Apply per spec.
- Code [Luis]: Enforce required vs informational validation modes and fix-then-revalidate loop hooks.
- Code [Luis]: Persist validation summary into Plan metadata for later review.
- Docs [Luis]: Add docs/reference/validation_pipeline.md with ordering, timeouts, and failure handling.
- Tests (Behave) [Luis]: Add features/validation_pipeline.feature for pass/fail paths and required/informational modes.
- Tests (Robot) [Luis]: Add robot/validation_pipeline.robot for pipeline smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/validation_pipeline_bench.py for pipeline runtime.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(validation): add validation pipeline and results model".
COMMIT (Owner: Jeff | Group: C6.wraps) - Commit message: "feat(validation): support wrapped tools and transforms" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement validation wraps execution path that runs the wrapped Tool and captures its output.
- Code [Jeff]: Add transform engine that maps wrapped tool output into ValidationResult schema (must output passed boolean).
- Code [Jeff]: Enforce read-only constraints for validations even when wrapping write-capable tools; block if violation.
- Docs [Jeff]: Update docs/reference/validation_model.md with wraps + transform examples and safety rules.
- Tests (Behave) [Jeff]: Add wrapped-validation scenarios with transform success/fail paths.
- Tests (Robot) [Jeff]: Add robot/validation_wraps.robot for wrapped validation end-to-end.
- Tests (ASV) [Jeff]: Add asv/benchmarks/validation_wraps_bench.py for transform overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(validation): support wrapped tools and transforms".
COMMIT (Owner: Jeff | Group: C6.gating) - Commit message: "feat(validation): integrate validation with apply gating" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Block apply on required validation failure; surface validation artifacts for review.
- Code [Jeff]: Ensure informational validation failures do not block apply but are logged in plan status.
- Code [Jeff]: Add CLI status output for validation summary (required vs informational counts).
- Docs [Jeff]: Update docs/reference/plan_actor_integration.md with validation gating behavior.
- Tests (Behave) [Jeff]: Add features/validation_gating.feature for apply blocking.
- Tests (Robot) [Jeff]: Add robot/validation_gating.robot for end-to-end gating.
- Tests (ASV) [Jeff]: Add asv/benchmarks/validation_gating_bench.py for gating overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(validation): integrate validation with apply gating".

Parallel Group C7: MCP Adapter [Aditya] (depends on C3)

COMMIT (Owner: Aditya | Group: C7.mcp) - Commit message: "feat(skill): add MCP adapter for external tools" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Aditya]: Implement MCP client adapter conforming to Tool interface with connection config.
- Code [Aditya]: Register MCP tools in Tool Registry with dynamic discovery from MCP server.
- Code [Aditya]: Add timeout and retry defaults for MCP calls (local-only for MVP).
- Docs [Aditya]: Add docs/reference/skills_mcp.md with server connection examples.
- Tests (Behave) [Aditya]: Add features/skill_mcp.feature for MCP tool calls.
- Tests (Robot) [Aditya]: Add robot/skill_mcp.robot for MCP adapter smoke test.
- Tests (ASV) [Aditya]: Add asv/benchmarks/mcp_adapter_bench.py for tool invocation latency.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "feat(skill): add MCP adapter for external tools".

Parallel Group C8: Built-in Provider Actors [Aditya] (depends on C1/C2)

COMMIT (Owner: Aditya | Group: C8.providers) - Commit message: "feat(actor): add built-in provider actors" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Aditya]: Add built-in actor configs for openai/, anthropic/, and openrouter/ (plus google/ if configured).
- Code [Aditya]: Add built-in actors for invariant reconciliation and estimation roles (using provider defaults).
- Docs [Aditya]: Add docs/reference/provider_actors.md with provider defaults.
- Tests (Behave) [Aditya]: Add features/provider_actors.feature for built-in actor loading.
- Tests (Robot) [Aditya]: Add robot/provider_actors.robot for registry visibility.
- Tests (ASV) [Aditya]: Add asv/benchmarks/provider_actor_load_bench.py for registry load cost.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "feat(actor): add built-in provider actors".

Parallel Group C9: Plan-Actor Integration [Jeff + Luis] (depends on C2/C5/C6)

COMMIT (Owner: Jeff | Group: C9.execute) - Commit message: "feat(plan): execute strategize and execute phases via actors" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Connect PlanLifecycleService to actor execution for Strategize and Execute phases.
- Code [Jeff]: Ensure Strategize is read-only and records decisions without modifying resources.
- Code [Jeff]: Ensure Execute uses sandbox resources and tool calls routed through Tool Router + ChangeSet.
- Code [Jeff]: Add plan status updates for phase start/complete/fail during actor execution.
- Docs [Jeff]: Add docs/reference/plan_actor_integration.md with phase flow.
- Tests (Behave) [Jeff]: Add features/plan_actor_integration.feature for strategy/execute flows.
- Tests (Robot) [Jeff]: Add robot/plan_actor_integration.robot for end-to-end actor execution.
- Tests (ASV) [Jeff]: Add asv/benchmarks/plan_actor_integration_bench.py for execution overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(plan): execute strategize and execute phases via actors".
COMMIT (Owner: Jeff | Group: C9.apply) - Commit message: "feat(plan): integrate change review and apply flow" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Wire ChangeSet review artifacts into plan diff and review-before-apply flow.
- Code [Jeff]: Ensure Apply merges sandbox into real resources only after required validations pass.
- Code [Jeff]: Persist apply summary (files changed, validations) back into Plan metadata for plan status.
- Docs [Jeff]: Update CLI docs for plan diff and plan apply review output.
- Tests (Behave) [Jeff]: Add features/plan_review_apply.feature for review gate behavior.
- Tests (Robot) [Jeff]: Add robot/plan_review_apply.robot for review-before-apply path.
- Tests (ASV) [Jeff]: Add asv/benchmarks/plan_apply_bench.py for apply throughput.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(plan): integrate change review and apply flow".

M3 SUCCESS CRITERIA:

Actor YAML schema validated; examples load and compile to LangGraph.
Skills execute via SkillContext; built-in file/dir/search/git skills available.
Tool-based change tracking (no output parsing) produces ChangeSet and diff review artifacts.
MCP adapter executes a tool against a test MCP server.
Built-in provider actors available (openai/, anthropic/, openrouter/ as configured).
Validation pipeline runs validation attachments and blocks apply on required failure.
Plan lifecycle uses actors for Strategize/Execute and applies ChangeSet after review.
nox passes with coverage >=97% across actor/skill/change-tracking suites.

--- MERGE POINT 1: After M3, all workstreams coordinate ---

Section 6: Execution Pipeline, Decisions & Invariants [M3-M4]

Target: Milestone M4 (+21 days) Week 3 focus: decision capture, correction, invariants, and DoD gating.

Parallel Group D1: Decision Domain [Hamza + Rui] (foundation for D2-D5)

COMMIT (Owner: Hamza | Group: D1.domain) - Commit message: "feat(domain): add decision model and context snapshots" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add DecisionType, ContextSnapshot, and Decision models with correction fields and helpers.
- Code [Hamza]: Include required fields: question, chosen option, alternatives, confidence score, rationale, dependencies, and context hash.
- Docs [Hamza]: Add docs/reference/decision_model.md with examples and schema notes.
- Tests (Behave) [Hamza]: Add features/decision_model.feature for validation and helpers.
- Tests (Robot) [Hamza]: Add robot/decision_model.robot smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/decision_model_bench.py for decision validation throughput.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(domain): add decision model and context snapshots".

Parallel Group D2: Decision Recording Service [Hamza] (depends on D1)

COMMIT (Owner: Hamza | Group: D2.service) - Commit message: "feat(service): add decision recording and snapshot store" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement DecisionService with record_decision, sequence numbers, tree queries, and downstream linking.
- Code [Hamza]: Add ContextSnapshotStore interface with a file-backed MVP implementation and hash dedupe.
- Code [Hamza]: Integrate decision recording into strategize/execute phases (prompt/strategy/subplan/tool decisions).
- Docs [Hamza]: Add docs/reference/decision_service.md covering recording and snapshots.
- Tests (Behave) [Hamza]: Add features/decision_recording.feature scenarios.
- Tests (Robot) [Hamza]: Add robot/decision_recording.robot integration smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/decision_recording_bench.py for record throughput.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(service): add decision recording and snapshot store".

Parallel Group D3: Decision CLI & Viewing [Hamza + Rui] (depends on D1/D2)

COMMIT (Owner: Hamza | Group: D3.cli) - Commit message: "feat(cli): add plan tree and explain commands" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement plan tree and plan explain with rich/json/flat formats and --show-superseded/--show-context.
- Code [Hamza]: Add --show-reasoning to include confidence and alternatives in explain output per spec.
- Docs [Hamza]: Update CLI reference for decision viewing commands.
- Tests (Behave) [Hamza]: Add tree/explain scenarios including superseded handling.
- Tests (Robot) [Hamza]: Add robot/decision_cli.robot smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/decision_cli_bench.py for tree rendering overhead.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(cli): add plan tree and explain commands".

Parallel Group D4: Decision Correction [Jeff + Luis] (depends on D2/D3)

COMMIT (Owner: Jeff | Group: D4.revert) - Commit message: "feat(service): add decision correction revert flow" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement correction impact analysis and dry-run reporting.
- Code [Jeff]: Revert flow with checkpoint rollback, supersede downstream decisions, and subtree re-exec.
- Code [Jeff]: Persist correction attempt IDs and link them to superseded decisions.
- Docs [Jeff]: Add docs/reference/decision_correction.md for revert behavior.
- Tests (Behave) [Jeff]: Add revert + dry-run scenarios.
- Tests (Robot) [Jeff]: Add revert integration tests with checkpoint rollback.
- Tests (ASV) [Jeff]: Add asv/benchmarks/decision_correction_revert_bench.py for correction overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(service): add decision correction revert flow".
COMMIT (Owner: Jeff | Group: D4.append) - Commit message: "feat(service): add decision correction append flow" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Append flow creating fix subplan without rewriting history; link correction attempt + decision tree updates.
- Code [Jeff]: Record append corrections as separate subtree with explicit lineage.
- Docs [Jeff]: Extend correction docs for append mode and guidance-file usage.
- Tests (Behave) [Jeff]: Add append correction scenarios.
- Tests (Robot) [Jeff]: Add append correction smoke test.
- Tests (ASV) [Jeff]: Add asv/benchmarks/decision_correction_append_bench.py for append overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(service): add decision correction append flow".

Parallel Group D5: Decision Persistence [Hamza + Luis] (depends on D1)

COMMIT (Owner: Hamza | Group: D5.db) - Commit message: "feat(db): add decision tables" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add Alembic migrations for decisions and context_snapshots with indexes.
- Code [Hamza]: Add indexes for plan_id, decision_type, and superseded flags for fast tree queries.
- Docs [Hamza]: Update docs/reference/database_schema.md with decision tables.
- Tests (Behave) [Hamza]: Add migration verification scenarios.
- Tests (Robot) [Hamza]: Add DB migration smoke test.
- Tests (ASV) [Hamza]: Add asv/benchmarks/decision_migration_bench.py for migration baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(db): add decision tables".
COMMIT (Owner: Hamza | Group: D5.repo) - Commit message: "feat(repo): add decision repositories" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement DecisionRepository + ContextSnapshotRepository with tree queries and max-sequence helpers.
- Code [Hamza]: Add repository methods for superseded decision lookup and subtree retrieval.
- Docs [Hamza]: Document repository interfaces in docs/reference/repositories.md.
- Tests (Behave) [Hamza]: Add decision persistence scenarios (create/query/superseded).
- Tests (Robot) [Hamza]: Add repository integration smoke test.
- Tests (ASV) [Hamza]: Add asv/benchmarks/decision_repository_bench.py for tree query performance.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(repo): add decision repositories".
COMMIT (Owner: Luis | Group: D5.di) - Commit message: "feat(di): wire decision services" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Wire decision repositories + services into DI and CLI.
- Docs [Luis]: Update DI docs for decision wiring.
- Tests (Behave) [Luis]: Add DI wiring scenarios for decision commands.
- Tests (Robot) [Luis]: Add CLI smoke test using persisted decisions.
- Tests (ASV) [Luis]: Add asv/benchmarks/decision_di_bench.py for DI resolution overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(di): wire decision services".
COMMIT (Owner: Rui | Group: D5.tests) - Commit message: "test(persistence): add decision persistence suites" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Tests (Behave) [Rui]: Add features/decision_persistence.feature scenarios.
- Tests (Robot) [Rui]: Add robot/decision_persistence.robot E2E coverage.
- Docs [Rui]: Update docs/development/testing.md with decision suites.
- Tests (ASV) [Rui]: Add asv/benchmarks/decision_persistence_bench.py for DB persistence throughput.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "test(persistence): add decision persistence suites".

Parallel Group DOD: Definition of Done + Invariants [Luis + Jeff] (depends on D2/D4)

COMMIT (Owner: Luis | Group: DOD.dod) - Commit message: "feat(dod): enforce definition-of-done gating" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Evaluate definition_of_done before apply; block apply with clear error if unmet.
- Code [Luis]: Ensure DoD templating uses plan arguments and preserves template in plan metadata.
- Docs [Luis]: Add docs/reference/definition_of_done.md with examples.
- Tests (Behave) [Luis]: Add DoD pass/fail scenarios.
- Tests (Robot) [Luis]: Add DoD integration smoke test.
- Tests (ASV) [Luis]: Add asv/benchmarks/dod_evaluation_bench.py for evaluation overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(dod): enforce definition-of-done gating".
COMMIT (Owner: Jeff | Group: DOD.invariants) - Commit message: "feat(invariant): add invariant models and enforcement" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Add invariant models, merge order (plan > project > action > global), and enforcement before strategize.
- Code [Jeff]: Add Invariant Reconciliation Actor role and record invariant_enforced decisions.
- Code [Jeff]: Add agents invariant add/list/remove CLI with scope flags.
- Docs [Jeff]: Add docs/reference/invariants.md and update CLI reference.
- Tests (Behave) [Jeff]: Add invariant merge + violation scenarios.
- Tests (Robot) [Jeff]: Add invariant CLI integration tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/invariant_merge_bench.py for merge overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(invariant): add invariant models and enforcement".

Section 7: Subplans & Parallelism [M5]

Target: Milestone M5 (+25 days) Week 3-4 focus: subplan spawning, parallel execution, and result merging.

Parallel Group E1: Subplan Domain [Luis + Rui]

COMMIT (Owner: Luis | Group: E1.domain) - Commit message: "feat(domain): add subplan config and status models" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add ExecutionMode enum (sequential, parallel, hybrid) with validation guards.
- Code [Luis]: Add MergeStrategy enum (three_way, sequential, json) with defaults.
- Code [Luis]: Add SubplanConfig model fields: parent_plan_id, spawn_decision_id, dependencies, max_parallel, merge_strategy, automation_profile_override, invariants_override, context_view_override.
- Code [Luis]: Add SubplanStatus model fields: subplan_id, state, started_at, completed_at, error_message, changeset_id.
- Code [Luis]: Add SubplanAttempt model fields: attempt_id (ULID), subplan_id, attempt_number, started_at, completed_at, error_details.
- Code [Luis]: Extend Plan with subplan_config, subplan_statuses, spawn_decision_id, and helpers (is_subplan, has_subplans, child_count).
- Code [Luis]: Add DecisionType constants for subplan_spawn and subplan_parallel_spawn and ensure models reference them.
- Docs [Luis]: Add docs/reference/subplan_model.md.
- Tests (Behave) [Luis]: Add features/subplan_model.feature scenarios for config validation, dependency cycles, and parent/root helpers.
- Tests (Robot) [Luis]: Add robot/subplan_model.robot smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/subplan_model_bench.py for model validation.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(domain): add subplan config and status models".

Parallel Group E2: Subplan Spawning [Jeff + Aditya] (depends on D2 + E1)

COMMIT (Owner: Jeff | Group: E2.service) - Commit message: "feat(service): add subplan service and spawn workflow" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Implement SubplanService with spawn_subplan, spawn_batch, tree queries, and bounded context builder.
- Code [Jeff]: Build bounded context from parent plan decisions + project context policies; enforce token/file limits.
- Code [Jeff]: Inherit automation profile + invariants from parent plan; allow subplan overrides from decisions.
- Code [Jeff]: Persist subplan config into child Plan metadata (subplan_config) and link spawn_decision_id.
- Code [Jeff]: Link SUBPLAN_SPAWN decisions to created subplans and status tracking.
- Docs [Jeff]: Add docs/reference/subplan_service.md.
- Tests (Behave) [Jeff]: Add subplan spawn scenarios (inheritance, overrides, dependency ordering).
- Tests (Robot) [Jeff]: Add subplan spawn integration tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/subplan_spawn_bench.py for spawn throughput.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(service): add subplan service and spawn workflow".
COMMIT (Owner: Aditya | Group: E2.actor) - Commit message: "feat(actor): add plan_subplan tool and decision emission" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Aditya]: Add plan_subplan tool to strategy actors and emit SUBPLAN_SPAWN decisions.
- Code [Aditya]: Support parallel=true to emit SUBPLAN_PARALLEL_SPAWN and include dependency list.
- Code [Aditya]: Include merge strategy, resource scope, and context view overrides in decision payload.
- Docs [Aditya]: Update actor YAML examples for subplan emission.
- Tests (Behave) [Aditya]: Add scenarios for subplan decision emission (parallel + dependencies).
- Tests (Robot) [Aditya]: Add actor tool integration smoke tests.
- Tests (ASV) [Aditya]: Add asv/benchmarks/subplan_actor_tool_bench.py for tool invocation overhead.
- Quality [Aditya]: Run nox (all default sessions, including benchmark).
- Quality [Aditya]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Aditya]: git commit -m "feat(actor): add plan_subplan tool and decision emission".

Parallel Group E3: Parallel Execution [Luis + Jeff] (depends on E1/E2)

COMMIT (Owner: Luis | Group: E3.exec) - Commit message: "feat(service): add subplan scheduler and execution" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add subplan scheduler with max_parallel, dependency ordering, and fail-fast handling.
- Code [Luis]: Support sequential and parallel execution modes based on SubplanConfig.
- Code [Luis]: Track status updates for subplans and propagate to parent plan (processing/complete/errored).
- Code [Luis]: Add cancellation propagation from parent to child subplans.
- Docs [Luis]: Add docs/reference/subplan_execution.md.
- Tests (Behave) [Luis]: Add parallel + dependency execution scenarios.
- Tests (Robot) [Luis]: Add parallel execution integration tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/subplan_scheduler_bench.py for scheduler overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(service): add subplan scheduler and execution".

Parallel Group E4: Result Merging [Jeff] (depends on E3)

COMMIT (Owner: Jeff | Group: E4.merge) - Commit message: "feat(merge): add subplan merge strategies" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Add three-way merge strategy for file changes and conflict markers.
- Code [Jeff]: Add sequential merge and JSON merge strategies; expose merge result artifacts.
- Code [Jeff]: Add conflict artifact model (file_path, conflict_type, base/left/right snippets).
- Code [Jeff]: Store merge output as ChangeSet and attach to parent plan for review.
- Docs [Jeff]: Add docs/reference/subplan_merge.md.
- Tests (Behave) [Jeff]: Add merge + conflict scenarios.
- Tests (Robot) [Jeff]: Add merge integration tests for multi-subplan plans.
- Tests (ASV) [Jeff]: Add asv/benchmarks/subplan_merge_bench.py for merge performance.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(merge): add subplan merge strategies".

Parallel Group E5: Multi-Project Plans [Hamza] (depends on E2/E4)

COMMIT (Owner: Hamza | Group: E5.multi) - Commit message: "feat(plan): add multi-project subplan support" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Allow plans to target multiple projects with separate resource link contexts.
- Code [Hamza]: Ensure sandbox isolation and cross-project dependency resolution.
- Code [Hamza]: Add plan metadata to track project-specific ChangeSets and validation summaries.
- Docs [Hamza]: Add docs/reference/multi_project_plans.md.
- Tests (Behave) [Hamza]: Add multi-project subplan scenarios.
- Tests (Robot) [Hamza]: Add multi-project integration tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/multi_project_bench.py for multi-project overhead.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(plan): add multi-project subplan support".

Section 8: Large Project Autonomy & Context [M6]

Target: Milestone M6 (+30 days) Local-mode only: large-project autonomy is required; server connectivity remains stubbed.

Parallel Group G1: Large-Project Decomposition [Jeff]

COMMIT (Owner: Jeff | Group: G1.decompose) - Commit message: "feat(plan): add large-project decomposition and dependency closure" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Add hierarchical decomposition with 4+ levels and bounded context per subplan.
- Code [Jeff]: Implement decomposition heuristics (max_files_per_subplan, max_tokens_per_subplan, language/dir clustering).
- Code [Jeff]: Add dependency closure computation for large graphs and DAG execution ordering.
- Code [Jeff]: Add bounded dependency closure with cutoff thresholds and memoization for 10K+ files.
- Code [Jeff]: Record decomposition decisions in DecisionService (strategy_choice + subplan_spawn entries).
- Docs [Jeff]: Add docs/reference/large_project_decomposition.md.
- Tests (Behave) [Jeff]: Add deep hierarchy + dependency closure scenarios.
- Tests (Robot) [Jeff]: Add large-project decomposition integration tests.
- Tests (ASV) [Jeff]: Add asv/benchmarks/large_project_decompose_bench.py for decomposition runtime.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(plan): add large-project decomposition and dependency closure".

Parallel Group G2: Checkpointing & Rollback [Luis]

COMMIT (Owner: Luis | Group: G2.checkpoint) - Commit message: "feat(checkpoint): add checkpointing and rollback" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add checkpoint declarations for tools and plan-level rollback policy.
- Code [Luis]: Add checkpoints table (checkpoint_id ULID, plan_id, sandbox_ref, created_at, metadata_json).
- Code [Luis]: Implement plan rollback <plan_id> <checkpoint_id> command.
- Code [Luis]: Implement git-worktree checkpoint snapshots (commit hash or patch) and rollback restore.
- Docs [Luis]: Add docs/reference/checkpointing.md.
- Tests (Behave) [Luis]: Add checkpoint/rollback scenarios.
- Tests (Robot) [Luis]: Add rollback integration tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/checkpoint_rollback_bench.py for rollback latency.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(checkpoint): add checkpointing and rollback".

Parallel Group G3: Semantic Validation [Luis]

COMMIT (Owner: Luis | Group: G3.semantic) - Commit message: "feat(validation): add semantic validation service" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add semantic validation hooks during strategize/execute and error-pattern checks.
- Code [Luis]: Add rule registry for semantic validators (dependency cycles, API misuse, missing symbols).
- Code [Luis]: Integrate semantic validation results into ValidationPipeline as informational by default.
- Docs [Luis]: Add docs/reference/semantic_validation.md.
- Tests (Behave) [Luis]: Add semantic validation scenarios.
- Tests (Robot) [Luis]: Add semantic validation integration tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/semantic_validation_bench.py for validation cost.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(validation): add semantic validation service".

Parallel Group G4: Context Tiers & Views [Hamza + Rui]

COMMIT (Owner: Hamza | Group: G4.context) - Commit message: "feat(context): add hot/warm/cold tiers and actor views" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement hot/warm/cold tiers with indexing, LRU eviction, and promotion/demotion.
- Code [Hamza]: Add tier storage backends (in-memory hot, sqlite warm, file-backed cold).
- Code [Hamza]: Add per-actor context views (strategist/executor/reviewer) and filtered presentation.
- Code [Hamza]: Add summarization hook when demoting to cold tier.
- Docs [Hamza]: Add docs/reference/context_tiers.md.
- Tests (Behave) [Hamza]: Add context tier scenarios.
- Tests (Robot) [Hamza]: Add context tier integration tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/context_tiers_bench.py for tier lookup performance.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(context): add hot/warm/cold tiers and actor views".

Parallel Group G5: Cost & Risk Estimation [Hamza]

COMMIT (Owner: Hamza | Group: G5.estimate) - Commit message: "feat(estimation): add cost and risk estimation actor" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add optional estimation_actor role and cost/risk estimation outputs.
- Code [Hamza]: Persist estimation output to plan metadata (cost_estimate, risk_score, duration_estimate).
- Docs [Hamza]: Add docs/reference/estimation.md with output format.
- Tests (Behave) [Hamza]: Add estimation scenarios.
- Tests (Robot) [Hamza]: Add estimation integration smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/estimation_actor_bench.py for estimation runtime.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(estimation): add cost and risk estimation actor".

Parallel Group G6: CLI Polish [Jeff]

COMMIT (Owner: Jeff | Group: G6.cli) - Commit message: "chore(cli): polish help and output" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Jeff]: Standardize help text, progress indicators, and error messages with recovery hints.
- Code [Jeff]: Ensure --format outputs are consistent (rich/color/table/plain/json/yaml) across core commands.
- Docs [Jeff]: Update CLI output examples where needed.
- Tests (Robot) [Jeff]: Add CLI UX smoke tests for critical commands.
- Tests (ASV) [Jeff]: Add asv/benchmarks/cli_render_bench.py for output rendering overhead.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "chore(cli): polish help and output".

--- MERGE POINT 2: Day 30 - Large Project Autonomy Target (LOCAL MODE ONLY) ---

By Day 30, the system must be able to (all in LOCAL MODE, server connectivity is deferred):

Handle projects with 10,000+ files using hierarchical decomposition.
Port source code from one language to another autonomously.
Use hierarchical subplans (5+ levels deep) for large tasks.
Correct decisions at any point without full re-execution.
Operate entirely in local mode (server client stubs in place but not implemented).

Section 9: Server Connectivity (Stubs Only) [Beyond Day 30]

Target: Milestone M7 (+35 days)

Parallel Group F0: Server Client Stubs [Luis + Rui] (required for M6; no server implementation)

COMMIT (Owner: Luis | Group: F0.stubs) - Commit message: "feat(interfaces): add server client stubs" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add protocol stubs for ServerClient, RemoteExecutionClient, and AuthClient with NotImplementedError.
- Code [Luis]: Add agents connect <server_url> CLI stub in cli/commands/server_client.py.
- Docs [Luis]: Add docs/reference/server_client_stubs.md noting client-only behavior.
- Tests (Behave) [Luis]: Add stub behavior scenarios.
- Tests (Robot) [Luis]: Add CLI stub smoke test.
- Tests (ASV) [Luis]: Add asv/benchmarks/server_stub_bench.py (baseline no-op).
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(interfaces): add server client stubs".

M7 SUCCESS CRITERIA (Post-Day 30):

agents [--data-dir PATH] [--config-path PATH] connect <server_url> establishes connection to an external server.
Plans can be synced and executed on a remote server.
Real-time updates received via WebSocket from server.
Remote projects can be specified and executed on server.

Section 10: Async Infrastructure & Later-Stage Quality Work [Various Leads]

Note: Quality automation setup is in Section 0; Section 10 focuses on async infrastructure and later-stage validation support.

Parallel Group 10A: Async Infrastructure [Luis]

COMMIT (Owner: Luis | Group: 10A.async) - Commit message: "feat(async): add async command execution and workers" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Implement async command execution per ADR-002 with cancellation and timeout handling.
- Code [Luis]: Add AsyncJob model and async_jobs table (plan_id, phase, status, payload_json, created_at, started_at, finished_at).
- Code [Luis]: Add AsyncWorker orchestrator with polling loop, max_workers config, and graceful shutdown hooks.
- Code [Luis]: Add job enqueue hooks for plan execute/apply when async is enabled via config flag (no new CLI flags).
- Code [Luis]: Add cancellation token support and ensure cancellation propagates to tool execution.
- Docs [Luis]: Update docs/reference/async_architecture.md with execution flow, job states, and shutdown rules.
- Tests (Behave) [Luis]: Add features/async_execution.feature for async command handling (enqueue, worker pick-up, cancel).
- Tests (Robot) [Luis]: Add robot/async_execution.robot smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/async_execution_bench.py for worker scheduling overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(async): add async command execution and workers".
COMMIT (Owner: Luis | Group: 10A.retry) - Commit message: "feat(async): wire retry policies into services" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Integrate retry/circuit breaker policies into service layer operations.
- Code [Luis]: Add retry policy configuration keys (max_attempts, base_delay, max_delay, jitter) to settings.
- Code [Luis]: Ensure retries are only applied to idempotent operations (repository reads, validation calls) and never to applies.
- Docs [Luis]: Document retry policy defaults and override points.
- Tests (Behave) [Luis]: Add retry/circuit breaker behavior scenarios.
- Tests (Robot) [Luis]: Add resilience smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/retry_policy_bench.py for retry overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(async): wire retry policies into services".

Parallel Group 10B: Selective Quality Review [Brent]

COMMIT (Owner: Brent | Group: 10B.review) - Commit message: "docs(qa): add review playbook and priority matrix" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Docs [Brent]: Create docs/development/review_playbook.md with focus areas and skip rules.
- Docs [Brent]: Add priority matrix and review SLA guidance.
- Docs [Brent]: Add checklist templates for architecture review, CLI review, and DB migration review.
- Tests (Behave) [Brent]: Add scenarios validating review playbook references exist.
- Tests (Robot) [Brent]: Add docs build smoke test covering the new guide.
- Tests (ASV) [Brent]: Add asv/benchmarks/docs_build_bench.py for docs build baseline.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "docs(qa): add review playbook and priority matrix".

Parallel Group 10C: Validation Testing Support [Brent + Luis]

COMMIT (Owner: Brent | Group: 10C.edge) - Commit message: "test(validation): add edge case suites" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Brent]: Add shared edge-case fixtures under features/fixtures/validation/.
- Code [Brent]: Add fixtures for malformed tool outputs, missing resources, and validation timeouts.
- Docs [Brent]: Update docs/development/testing.md with validation test catalog.
- Tests (Behave) [Brent]: Add edge-case scenarios for concurrency, conflicts, rollbacks, and timeouts.
- Tests (Robot) [Brent]: Add integration coverage for edge-case suites.
- Tests (ASV) [Brent]: Add asv/benchmarks/validation_edge_bench.py for edge-case runtime.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "test(validation): add edge case suites".
COMMIT (Owner: Luis | Group: 10C.semantic) - Commit message: "test(validation): add semantic validation suites" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Add semantic validation fixtures and error-pattern samples.
- Code [Luis]: Add fixtures for language-porting mismatches and dependency graph violations.
- Docs [Luis]: Document semantic validation coverage expectations.
- Tests (Behave) [Luis]: Add semantic validation scenarios.
- Tests (Robot) [Luis]: Add semantic validation integration tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/semantic_validation_suite_bench.py for suite runtime.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "test(validation): add semantic validation suites".
COMMIT (Owner: Brent | Group: 10C.performance) - Commit message: "test(perf): add scale test fixtures" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Brent]: Add scale fixtures for 1K/5K/10K file repos in features/fixtures/scale/.
- Code [Brent]: Add scriptless fixture generator instructions (documented, no helper scripts).
- Docs [Brent]: Add scale test runbook and environment notes.
- Tests (Behave) [Brent]: Add scale test scenarios validating thresholds.
- Tests (Robot) [Brent]: Add large-project Robot tests for performance runs.
- Tests (ASV) [Brent]: Add asv/benchmarks/scale_fixture_bench.py for baseline performance.
- Quality [Brent]: Run nox (all default sessions, including benchmark).
- Quality [Brent]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Brent]: git commit -m "test(perf): add scale test fixtures".

Section 11: Security & Safety [WORKSTREAM F - Luis + Brent]

Target: Throughout project, critical items by Day 14

Note: Security tasks focus on runtime protections; quality gates are handled in Section 0.

Parallel Group SEC1: Remove eval() usage [Luis]

COMMIT (Owner: Luis | Group: SEC1.eval) - Commit message: "fix(security): remove eval-based config parsing" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Audit and remove all eval/exec/compile usage from production config paths.
- Docs [Luis]: Add docs/reference/security_eval.md with replacement patterns.
- Tests (Behave) [Luis]: Add features/security_eval.feature scenarios.
- Tests (Robot) [Luis]: Add robot/security_eval.robot smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/security_eval_bench.py for config parsing baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "fix(security): remove eval-based config parsing".

Parallel Group SEC2: Template Injection Prevention [Luis]

COMMIT (Owner: Luis | Group: SEC2.template) - Commit message: "fix(security): harden template rendering" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Replace unsafe template usage with a sandboxed renderer and strict token set.
- Docs [Luis]: Add docs/reference/template_security.md with safe patterns.
- Tests (Behave) [Luis]: Add features/security_templates.feature scenarios.
- Tests (Robot) [Luis]: Add robot/security_templates.robot smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/security_template_bench.py for render baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "fix(security): harden template rendering".

Parallel Group SEC3: Exception Handling Audit [Luis]

COMMIT (Owner: Luis | Group: SEC3.exceptions) - Commit message: "fix(security): enforce explicit exception handling" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Replace silent exception handling with explicit errors and context propagation.
- Docs [Luis]: Document error propagation standards and logging rules.
- Tests (Behave) [Luis]: Add features/security_exceptions.feature scenarios.
- Tests (Robot) [Luis]: Add exception handling integration smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/security_exception_bench.py for error path overhead baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "fix(security): enforce explicit exception handling".

Parallel Group SEC4: Async Lifecycle Correctness [Luis]

COMMIT (Owner: Luis | Group: SEC4.async) - Commit message: "fix(security): close async resources and leaks" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Close async resources, checkpoint files, and subscription leaks with retention policies.
- Docs [Luis]: Add docs/reference/async_safety.md on cleanup rules.
- Tests (Behave) [Luis]: Add features/security_async.feature scenarios.
- Tests (Robot) [Luis]: Add async cleanup integration tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/security_async_cleanup_bench.py for cleanup overhead baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "fix(security): close async resources and leaks".

Parallel Group SEC5: Secrets Management [Hamza]

COMMIT (Owner: Hamza | Group: SEC5.secrets) - Commit message: "feat(security): add secrets masking and validation" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Mask credentials in logs, validate required keys, and block secret leakage in outputs.
- Docs [Hamza]: Add docs/reference/secrets_handling.md.
- Tests (Behave) [Hamza]: Add features/security_secrets.feature scenarios.
- Tests (Robot) [Hamza]: Add secrets handling integration smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/security_secrets_bench.py for masking overhead baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(security): add secrets masking and validation".

Parallel Group SEC6: Read-Only Enforcement [Luis]

COMMIT (Owner: Luis | Group: SEC6.readonly) - Commit message: "feat(security): enforce read-only actions" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Validate read-only actions only use read-only skills at execution time.
- Docs [Luis]: Add docs/reference/read_only_actions.md.
- Tests (Behave) [Luis]: Add features/security_readonly.feature scenarios.
- Tests (Robot) [Luis]: Add read-only enforcement integration tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/security_readonly_bench.py for enforcement overhead baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(security): enforce read-only actions".
- Note: Safety profile enforcement is deferred; see Section 18 POST.safety.

Parallel Group SEC7: Audit Logging [Hamza]

COMMIT (Owner: Hamza | Group: SEC7.audit) - Commit message: "feat(security): add audit logging for apply" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add audit log model, migration, and agents audit list CLI command.
- Docs [Hamza]: Add docs/reference/audit_logging.md.
- Tests (Behave) [Hamza]: Add features/security_audit.feature scenarios.
- Tests (Robot) [Hamza]: Add audit logging integration tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/security_audit_bench.py for log write overhead baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(security): add audit logging for apply".

Section 12: Session & Provider Fixes [WORKSTREAM G - Hamza]

Target: Days 8-12

Parallel Group SESS1: Session Management [Hamza]

COMMIT (Owner: Hamza | Group: SESS1.session) - Commit message: "feat(session): add session model and CLI" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement Session model (session_id ULID, actor_name, title, created_at, updated_at) and persistence table sessions.
- Code [Hamza]: Implement SessionService with create/list/show/delete/export/import/tell operations per spec.
- Code [Hamza]: Implement CLI commands session create/list/show/delete/export/import/tell with rich/plain/json output.
- Docs [Hamza]: Add docs/reference/session_management.md with CLI examples and output fields.
- Tests (Behave) [Hamza]: Add features/session_management.feature scenarios for create/list/show/delete/export/import/tell.
- Tests (Robot) [Hamza]: Add session CLI smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/session_cli_bench.py for session command overhead.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(session): add session model and CLI".

Parallel Group SESS2: Memory Persistence [Hamza]

COMMIT (Owner: Hamza | Group: SESS2.memory) - Commit message: "feat(memory): persist session history" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Persist MemoryService history keyed by session_id with backend config and retention limits.
- Code [Hamza]: Add session_messages table (session_id, role, content, created_at) and indexing for recent retrieval.
- Docs [Hamza]: Document memory backend options, retention policy, and export/import behavior.
- Tests (Behave) [Hamza]: Add features/memory_persistence.feature scenarios for save/load/trim.
- Tests (Robot) [Hamza]: Add memory persistence integration tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/memory_persistence_bench.py for storage overhead baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(memory): persist session history".

Parallel Group PROV1: Provider Fixes [Luis]

COMMIT (Owner: Luis | Group: PROV1.fixes) - Commit message: "fix(provider): remove FakeListLLM defaults" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Remove FakeListLLM fallback, fix auto-debug provider usage, and implement provider auto-detection.
- Code [Luis]: Update settings validation to fail fast when no providers are configured and no mock flag is set.
- Docs [Luis]: Update provider configuration docs and error messages.
- Tests (Behave) [Luis]: Add features/provider_fixes.feature scenarios.
- Tests (Robot) [Luis]: Add provider detection smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/provider_selection_bench.py for provider resolution baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "fix(provider): remove FakeListLLM defaults".

Parallel Group PROV2: Cost Controls & Fallback [Luis]

COMMIT (Owner: Luis | Group: PROV2.costs) - Commit message: "feat(provider): add cost controls and fallback" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Track tokens/costs, enforce budgets, rate limits, and provider fallback order.
- Code [Luis]: Add cost tracking fields to plan execution metadata and surface in plan status.
- Docs [Luis]: Add docs/reference/cost_controls.md with config keys and thresholds.
- Tests (Behave) [Luis]: Add features/cost_controls.feature scenarios.
- Tests (Robot) [Luis]: Add cost control integration smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/cost_controls_bench.py for cost check overhead.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(provider): add cost controls and fallback".

Section 13: Additional CLI Commands & UX [Days 10-14]

Parallel Group CLI0: Core System Commands [Hamza]

COMMIT (Owner: Hamza | Group: CLI0.core) - Commit message: "feat(cli): add version/info/diagnostics" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement version, info, and diagnostics commands with rich/plain/json/yaml output parity.
- Code [Hamza]: Add diagnostics checks for config file, database, providers, and filesystem permissions per spec.
- Docs [Hamza]: Update CLI reference with core system commands and sample outputs.
- Tests (Behave) [Hamza]: Add features/cli_core.feature scenarios for each command output.
- Tests (Robot) [Hamza]: Add core command smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/cli_core_bench.py for command runtime baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(cli): add version/info/diagnostics".

Parallel Group CLI1: Plan Interaction Commands [Hamza]

COMMIT (Owner: Hamza | Group: CLI1.plan) - Commit message: "feat(cli): add plan prompt/diff/artifacts" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement plan prompt, plan diff, and plan artifacts commands.
- Code [Hamza]: Ensure plan diff supports --format output and includes validation summary.
- Docs [Hamza]: Update CLI reference with plan interaction commands and output formats.
- Tests (Behave) [Hamza]: Add features/plan_interaction_cli.feature scenarios.
- Tests (Robot) [Hamza]: Add plan interaction CLI smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/plan_cli_interaction_bench.py for diff/artifacts runtime.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(cli): add plan prompt/diff/artifacts".

Parallel Group CLI2: Configuration Commands [Hamza]

COMMIT (Owner: Hamza | Group: CLI2.config) - Commit message: "feat(cli): add config and provider commands" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement config set/get/list and providers list commands.
- Code [Hamza]: Support config list regex filtering and --filter-values per spec.
- Docs [Hamza]: Update CLI reference with configuration commands and filtering examples.
- Tests (Behave) [Hamza]: Add features/config_cli.feature scenarios.
- Tests (Robot) [Hamza]: Add config CLI smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/config_cli_bench.py for command parsing baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(cli): add config and provider commands".

Parallel Group CLI3: Context Commands [Hamza]

COMMIT (Owner: Hamza | Group: CLI3.context) - Commit message: "feat(cli): add context policy commands" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement project context set/show and actor context set/show commands.
- Code [Hamza]: Support include/exclude resource and path globs, token limits, and summarize flags per spec.
- Docs [Hamza]: Update CLI reference with context policy usage and examples.
- Tests (Behave) [Hamza]: Add features/context_cli.feature scenarios.
- Tests (Robot) [Hamza]: Add context CLI smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/context_cli_bench.py for command runtime baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(cli): add context policy commands".

Section 14: Concurrency & Cleanup [Days 12-14]

Parallel Group CONC1: Plan Locking [Luis]

COMMIT (Owner: Luis | Group: CONC1.lock) - Commit message: "feat(concurrency): add plan and project locks" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Implement plan-level and project-level locks with timeouts.
- Code [Luis]: Add locks table with owner_id, resource_type, resource_id, acquired_at, expires_at.
- Code [Luis]: Ensure locks are enforced in PlanLifecycleService transitions and SubplanService scheduling.
- Docs [Luis]: Add docs/reference/concurrency.md with lock behavior.
- Tests (Behave) [Luis]: Add features/concurrency.feature scenarios for lock contention and expiry.
- Tests (Robot) [Luis]: Add lock integration smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/concurrency_lock_bench.py for lock overhead baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(concurrency): add plan and project locks".

Parallel Group CONC2: Resumable Execution [Luis]

COMMIT (Owner: Luis | Group: CONC2.resume) - Commit message: "feat(concurrency): add plan resume" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Luis]: Persist step-level progress and implement plan resume with graceful shutdown handling.
- Code [Luis]: Add resume checkpoints tied to decision IDs and sandbox checkpoints.
- Docs [Luis]: Update plan lifecycle docs for resume behavior.
- Tests (Behave) [Luis]: Add features/plan_resume.feature scenarios.
- Tests (Robot) [Luis]: Add resume integration tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/plan_resume_bench.py for resume overhead baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(concurrency): add plan resume".

Parallel Group CONC3: Garbage Collection [Hamza]

COMMIT (Owner: Hamza | Group: CONC3.gc) - Commit message: "feat(ops): add cleanup commands" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add cleanup for sandboxes, checkpoints, and stale sessions with CLI commands.
- Code [Hamza]: Add retention policy settings for sandbox age, checkpoint count, and session inactivity.
- Docs [Hamza]: Document cleanup commands and retention defaults.
- Tests (Behave) [Hamza]: Add features/garbage_collection.feature scenarios.
- Tests (Robot) [Hamza]: Add cleanup integration smoke tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/cleanup_bench.py for cleanup overhead baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(ops): add cleanup commands".

Section 16: Context Indexing [Days 15-17]

Parallel Group CTX1: Repository Indexing [Hamza]

COMMIT (Owner: Hamza | Group: CTX1.index) - Commit message: "feat(context): add repo indexing service" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Implement indexing service with file tree, language detection, and incremental refresh.
- Code [Hamza]: Add index metadata table (resource_id, indexed_at, file_count, token_estimate).
- Code [Hamza]: Enforce max file size and total size limits from project context policy.
- Docs [Hamza]: Add docs/reference/context_indexing.md.
- Tests (Behave) [Hamza]: Add features/context_indexing.feature scenarios.
- Tests (Robot) [Hamza]: Add indexing integration tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/context_indexing_bench.py for indexing throughput baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(context): add repo indexing service".

Parallel Group CTX2: Embedding Index [Hamza]

COMMIT (Owner: Hamza | Group: CTX2.embedding) - Commit message: "feat(context): add optional embedding search" (Only check after all subitems + nox pass + coverage >=97%, then commit)
- Code [Hamza]: Add embedding-based search with opt-in flag and fallback to full-text search.
- Code [Hamza]: Add embedding index metadata and cache invalidation on repo updates.
- Docs [Hamza]: Add docs/reference/embedding_search.md.
- Tests (Behave) [Hamza]: Add features/embedding_search.feature scenarios.
- Tests (Robot) [Hamza]: Add embedding search integration tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/embedding_search_bench.py for search runtime baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(context): add optional embedding search".

Section 17: Skill Registry [Days 17-18]

Section 18: Deferred Work

Deferred items remain planned but are not part of the 30-day MVP scope.

COMMIT (Owner: Hamza | Group: POST.resource) - Commit message: "feat(resource): add virtual resource equivalence tracking" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Hamza]: Add virtual_resource_links table mapping virtual resource ULID to physical resource ULIDs with uniqueness constraints.
- Code [Hamza]: Add ResourceEquivalenceService to create/merge virtual resources and update links on content divergence.
- Code [Hamza]: Add helper to compute equivalence key (hash or name) for auto-linking during resource discovery.
- Docs [Hamza]: Update docs/reference/resource_model.md with physical/virtual equivalence rules and examples.
- Tests (Behave) [Hamza]: Add scenarios for linking/unlinking physical resources to virtual resources and divergence updates.
- Tests (Robot) [Hamza]: Add Robot test that creates two identical physical resources and verifies a shared virtual resource.
- Tests (ASV) [Hamza]: Add asv/benchmarks/virtual_resource_bench.py for equivalence update overhead.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(resource): add virtual resource equivalence tracking".
COMMIT (Owner: Luis | Group: POST.server) - Commit message: "feat(client): add server http client" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add HTTP client with health check, version negotiation, and OpenAPI codegen integration.
- Code [Luis]: Add config keys for server base URL, API token, and TLS verification; wire into Settings.
- Code [Luis]: Map server error responses into domain errors with retry hints.
- Docs [Luis]: Add docs/reference/server_client_http.md with configuration and connection errors.
- Tests (Behave) [Luis]: Add scenarios for connection errors and version mismatch handling.
- Tests (Robot) [Luis]: Add mock-server connection tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/server_http_client_bench.py for connection overhead baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(client): add server http client".
COMMIT (Owner: Luis | Group: POST.server) - Commit message: "feat(client): add plan sync and remote execution" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Sync actions, request remote plan execution/apply/status, and reconcile remote plan IDs.
- Code [Luis]: Add conflict resolution policy (local wins vs server wins) with explicit CLI errors on ambiguity.
- Docs [Luis]: Document sync semantics and conflict handling in docs/reference/server_sync.md.
- Tests (Behave) [Luis]: Add scenarios for sync conflicts and retry behavior.
- Tests (Robot) [Luis]: Add mock-server sync tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/server_sync_bench.py for sync throughput baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(client): add plan sync and remote execution".
COMMIT (Owner: Luis | Group: POST.server) - Commit message: "feat(client): add websocket updates" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add WebSocket client for plan updates with reconnect/backoff policy.
- Code [Luis]: Define event schema mapping for plan status/progress/log stream updates.
- Docs [Luis]: Add docs/reference/server_websocket.md with event types and reconnect rules.
- Tests (Behave) [Luis]: Add scenarios for reconnect and event ordering.
- Tests (Robot) [Luis]: Add WebSocket mock tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/server_ws_bench.py for message handling baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(client): add websocket updates".
COMMIT (Owner: Hamza | Group: POST.server) - Commit message: "feat(client): add remote project support" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Hamza]: Add remote resource selection and server execution request wiring.
- Code [Hamza]: Add project-name resolution rules for remote namespaces and server aliases.
- Docs [Hamza]: Add docs/reference/server_remote_projects.md with project selection semantics.
- Tests (Behave) [Hamza]: Add scenarios for remote project selection errors.
- Tests (Robot) [Hamza]: Add remote execution mock tests.
- Tests (ASV) [Hamza]: Add asv/benchmarks/server_remote_project_bench.py for request overhead baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(client): add remote project support".
COMMIT (Owner: Rui | Group: POST.repl) - Commit message: "feat(cli): add interactive repl" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Rui]: Implement agents repl command that dispatches to existing CLI commands with shared config handling.
- Code [Rui]: Add history support with opt-out (--no-history) and default path ~/.cleveragents/history.
- Code [Rui]: Add tab-completion for top-level commands and last command repetition (!!).
- Docs [Rui]: Add REPL usage guide with supported commands and exit behavior.
- Tests (Behave) [Rui]: Add REPL behavior scenarios (history on/off, unknown command, exit).
- Tests (Robot) [Rui]: Add REPL smoke tests for command dispatch.
- Tests (ASV) [Rui]: Add asv/benchmarks/repl_bench.py for REPL startup baseline.
- Quality [Rui]: Run nox (all default sessions, including benchmark).
- Quality [Rui]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Rui]: git commit -m "feat(cli): add interactive repl".
COMMIT (Owner: Luis | Group: POST.auth) - Commit message: "feat(cli): add auth and team commands" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add agents auth login/logout/status and agents team list/use commands with stubbed responses when server is disabled.
- Code [Luis]: Add config keys for auth token storage, active team, and default namespace (client-only stubs).
- Code [Luis]: Wire stubbed commands to AuthClient and ServerClient interfaces (raise NotImplementedError when no server).
- Docs [Luis]: Document auth/team workflows and local-only stub behavior.
- Tests (Behave) [Luis]: Add auth/team CLI scenarios (stubbed responses, missing server errors).
- Tests (Robot) [Luis]: Add auth/team integration smoke tests.
- Tests (ASV) [Luis]: Add asv/benchmarks/auth_cli_bench.py for auth command baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(cli): add auth and team commands".
COMMIT (Owner: Jeff | Group: POST.tui) - Commit message: "feat(ui): add TUI/Web interface" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Jeff]: Define UI data-provider interface (plans, sessions, validations, diffs, logs) backed by local services.
- Code [Jeff]: Implement minimal TUI with plan list, plan detail, diff viewer, and validation summary panes.
- Code [Jeff]: Add Web UI stub that serves the same data via local-only routes (read-only by default).
- Docs [Jeff]: Add UI usage guide with navigation and data-refresh behavior.
- Tests (Behave) [Jeff]: Add UI behavior scenarios (list, detail, diff, refresh).
- Tests (Robot) [Jeff]: Add UI smoke tests for route loading and TUI navigation.
- Tests (ASV) [Jeff]: Add asv/benchmarks/ui_render_bench.py for UI render baseline.
- Quality [Jeff]: Run nox (all default sessions, including benchmark).
- Quality [Jeff]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Jeff]: git commit -m "feat(ui): add TUI/Web interface".
COMMIT (Owner: Hamza | Group: POST.dbresources) - Commit message: "feat(resource): add database resources" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Hamza]: Add database resource types (postgres, mysql, sqlite, duckdb) with connection args and auth handling.
- Code [Hamza]: Implement sandbox strategy using transaction wrappers and read-only toggles.
- Docs [Hamza]: Document database resource configuration and supported auth options.
- Tests (Behave) [Hamza]: Add database resource scenarios (connection validation, read-only enforcement).
- Tests (Robot) [Hamza]: Add database resource integration tests (local sqlite/duckdb only).
- Tests (ASV) [Hamza]: Add asv/benchmarks/db_resource_bench.py for resource registration baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(resource): add database resources".
COMMIT (Owner: Hamza | Group: POST.cloud) - Commit message: "feat(resource): add cloud infrastructure resources" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Hamza]: Add cloud resource types (aws, gcp, azure) with credential fields and region/tenant metadata.
- Code [Hamza]: Add stubbed sandbox strategies that validate configuration and return NotImplementedError for execution.
- Docs [Hamza]: Document cloud resource configuration and local-only stub behavior.
- Tests (Behave) [Hamza]: Add cloud resource scenarios (schema validation, stub errors).
- Tests (Robot) [Hamza]: Add cloud resource integration tests with stubbed responses.
- Tests (ASV) [Hamza]: Add asv/benchmarks/cloud_resource_bench.py for resource registration baseline.
- Quality [Hamza]: Run nox (all default sessions, including benchmark).
- Quality [Hamza]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Hamza]: git commit -m "feat(resource): add cloud infrastructure resources".
COMMIT (Owner: Luis | Group: POST.permissions) - Commit message: "feat(security): add permission system" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Implement namespace/project/plan/skill permission model (role bindings, default deny, allow overrides).
- Code [Luis]: Add enforcement hooks at CLI/service boundaries (server-only; local mode returns permissive defaults).
- Docs [Luis]: Document permission model, role matrix, and server-only behavior.
- Tests (Behave) [Luis]: Add permission scenarios (allow/deny, missing role, server disabled).
- Tests (Robot) [Luis]: Add permission integration tests with stubbed server client.
- Tests (ASV) [Luis]: Add asv/benchmarks/permission_check_bench.py for enforcement baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(security): add permission system".
COMMIT (Owner: Luis | Group: POST.safety) - Commit message: "feat(security): add safety profile enforcement" (COMMIT TASK: only check after every subtask below is complete, nox and coverage succeed, and the commit is created)
- Code [Luis]: Add SafetyProfile model, CLI flags, and execution enforcement hooks (server-only for now).
- Code [Luis]: Add safety profile resolution order (plan > project > global) with defaults.
- Docs [Luis]: Document safety profile options, defaults, and server-only behavior.
- Tests (Behave) [Luis]: Add safety profile enforcement scenarios (deny/allow paths).
- Tests (Robot) [Luis]: Add safety profile integration tests with stubbed server client.
- Tests (ASV) [Luis]: Add asv/benchmarks/safety_profile_bench.py for enforcement baseline.
- Quality [Luis]: Run nox (all default sessions, including benchmark).
- Quality [Luis]: Verify coverage >=97% via nox -s coverage_report.
- Commit [Luis]: git commit -m "feat(security): add safety profile enforcement".

Timeline Summary

TEAM ROLES AND ASSIGNMENTS

Developer	Role	Primary Focus Areas	Notes
Jeff	CTO/Lead Architect	Critical path items, architectural decisions, complex integrations	Fastest, most expert developer - handles blocking issues
Luis	Senior Python Architect	Domain models, persistence, algorithms, state machines	Good architecture but can be pedantic - needs clear requirements
Aditya	Domain Expert (Agents/LLMs)	Actor YAML configs, hierarchical actors, skill execution	Understands topic best but code may need cleanup
Hamza	Python/RDF Expert	Resources, sandbox, database, general Python	Well-rounded, no agent experience - assign infrastructure
Rui	Fast Developer	Testing (Behave/Robot), simpler implementations	New to Python - assign testing and straightforward tasks
Brent	Quality Specialist	Code review, linting, type checking, documentation	Slow but detail-oriented - low contention independent work
Mike/Brian	Sysadmins	Deployment, infrastructure setup	Minimal coding tasks

Week 1 (Days 1-7) - MVP Target (Source Code Only)

Day	Morning Focus	Owner	Afternoon Focus	Owner
1	A5.alpha + A5.action_arguments DB migrations + ORM models	Jeff + Luis	B1.core Project/Resource models	Hamza
2	A5.gamma repos/services + A5.tests + B3.cleanup (legacy project CLI)	Jeff + Rui (tests)	B2.persistence/B2.service + B3.cli Resource CLI	Hamza + Rui (tests)
3	B4.sandbox git_worktree	Jeff + Hamza	B4.sandbox manager + tests	Luis + Rui (tests)
4	C1.schema/C1.examples Actor YAML	Aditya	C2.loader/C2.compiler + C2.legacy v2 removal	Aditya + Jeff
5	C3.protocol/C3.context/C3.inline Skill framework	Jeff	C4.file/C4.search Built-in skills	Luis + Jeff
6	C7.mcp MCP Adapter	Aditya + Jeff	C4.git + C5.model/C5.router Change tracking	Luis + Jeff
7	C5.diff Diff review artifacts	Luis	C6.pipeline/C6.gating Validation pipeline	Luis + Rui (tests)

Week 2 (Days 8-14) - M3 Complete + Plan-Actor Integration

Day	Focus	Owner	Deliverable
8	C8.providers + C9.execute Plan-Actor integration	Jeff + Aditya (+Luis support)	Execute phase + providers ready
9	C9.apply Apply Phase + Review	Jeff + Luis	Apply flow ready with review gates
10	D1.domain Decision Model	Hamza (+Jeff review)	Decision model committed
11	D2.service Decision Recording	Hamza (+Jeff review)	Decision recording committed
12	E1.domain Subplan Model	Luis (+Jeff review)	Subplan domain committed
13	E2.service/E2.actor Subplan spawning	Jeff + Aditya (+Luis support)	Subplan spawn committed
14	End-to-end integration testing	All + Rui (tests) + Brent (QA)	M3 milestone verified

Week 3 (Days 15-21) - M4 Target (Decision Tree + Correction)

Day	Focus	Owner	Deliverable
15	D5.db/D5.repo Decision persistence	Hamza (+Jeff review)	Decision storage wired
16	D3.cli Decision viewing	Hamza (+Jeff review)	`agents [--data-dir PATH] [--config-path PATH] plan tree`, `agents [--data-dir PATH] [--config-path PATH] plan explain`
17	D4.revert Decision correction (revert)	Jeff (+Luis support)	`agents [--data-dir PATH] [--config-path PATH] plan correct` revert flow
18	D4.append + D5.di Decision wiring	Jeff + Hamza (+Luis support)	Append correction + service wiring
19	E3.exec Parallel Subplan Execution	Luis (+Jeff review)	Concurrent subplans
20	E4.merge Result Merging	Jeff (+Luis support)	Git-style merge for subplans
21	M4 integration testing	All + Rui (tests) + Brent (QA)	Decision correction working

Week 4 (Days 22-30) - M6 Target (Large Project Autonomy - LOCAL MODE ONLY)

Day	Focus	Owner	Deliverable
22-23	CTX1.index Context indexing + G3.semantic	Hamza + Luis	Large codebase indexing + semantic validation
24-25	G4.context Hot/Warm/Cold tiers + G2.checkpoint	Hamza + Luis	Three-tier memory + checkpointing
26-27	G1.decompose + G5.estimate	Jeff + Hamza	Autonomous decomposition + estimation
28	F0.stubs	Luis	Client stubs (NOT server impl)
29	M6 perf triage + large project tests	All + Rui (tests) + Brent (QA)	10K file perf target
30	M6 integration testing	All + Rui (tests) + Brent (QA)	Large project autonomy verified (Server connectivity DEFERRED)

Note

: Server connectivity (F1-F4) is DEFERRED beyond Day 30. Days 26-29 focus on client stubs only and large project testing. The server is a separate project.

Week 5 (Days 31-35) - M7 Target (Server Connectivity - Client Side Only)

Day	Focus	Owner	Deliverable
31-32	F1.client Server client infrastructure	Luis (+Jeff review)	HTTP client for server communication
33	F2.sync Plan sync client	Luis (+Jeff review)	Client can sync plans to server
34	F3.ws WebSocket client	Luis (+Jeff review)	Client receives real-time updates
35	F4.remote Remote project support	Hamza (+Jeff review)	Client can request server execution

Week 6 (Days 36-40) - M8 Target (Full Feature Set + Polish)

Day	Focus	Owner	Deliverable
36	A6.* automation level refinements	Jeff + Luis	Automation modes stabilized
37	G5.estimate cost/risk estimation	Hamza (+Jeff review)	Estimation working
38	G2.checkpoint rollback	Luis (+Jeff review)	Checkpointing + rollback
39	G1.decompose + G3.semantic performance tuning	Jeff + Luis	Benchmarks passing
40	Final integration + documentation	All + Rui (tests) + Brent (QA)	Release candidate ready

Continuous Tasks (Throughout)

Brent (Quality - Independent, Low Contention):

Review all PRs within 4 hours of submission
Run nox -s typecheck on all branches before merge
Run nox -s lint and ensure 0 warnings
Monitor test coverage (must stay >=97%)
Update documentation for API changes
Security audit: no eval(), no template injection, no secrets in code

Rui (Testing - Parallel with Feature Work):

Write Behave scenarios for each feature (before implementation starts)
Write Robot integration tests for each milestone
Run full test suite daily
Report test failures immediately
Maintain test fixtures and mocks in features/

Critical Path Dependencies

Day 1: A5 (Persistence + Action Args) ───────────────────────────────┐
Day 2: B1.core/B2.persistence/B2.service/B3.cli (Project/Resource) ─┐│
Day 3: B4.sandbox (Sandbox) ────────────────────────────────────────┼┤
Day 4: C1.schema/C2.legacy/C2.compiler (Actor) ─────────────────────┘│
Day 5: C3.protocol/C4.file (Skills) ─────────────────────────────────┤
Day 6: C4.search/C5.model (Change Tracking) ─────────────────────────┤
Day 7: C6.pipeline/C7.mcp/C8.providers (Validation + Providers) ─────┘
                                                        │
Day 8-9: C9.execute/C9.apply (Integration + Apply) ────────────────┤
Day 10-14: D1-E2 (Decisions + Subplans) ────────────────┤
                                                        │
                          MERGE POINT M3 ◄──────────────┘
                                                        │
Day 15-21: D3-E4 (Correction + Parallel) ───────────────┤
                                                        │
                          MERGE POINT M4 ◄──────────────┘
                                                        │
Day 22-30: CTX/G + F0 (Context + Large Project + Stubs) ─┘

Risk Mitigation

Risk	Mitigation	Owner
Git worktree complexity	Use B4.sandbox git_worktree with pre-commit verification and isolation tests	Jeff
Multi-file generation reliability	Validate C9.execute/C9.apply flows with diff review artifacts and Robot E2E	Luis + Rui
Decision tree correction bugs	Jeff reviews D4 correction + checkpointing; add revert/append Behave coverage	Jeff
Large codebase performance	Profile CTX1/CTX2 indexing + hot/warm/cold tiers; enforce bounded memory tests	Luis + Hamza
Server connectivity stubs stability	Keep client-only stubs isolated; gate with feature flags and contract tests	Jeff + Luis

Definition of Done (Each Task)

✅ Code implemented with full type annotations
✅ Behave scenarios written and passing
✅ Robot integration tests (for CLI/E2E tasks) passing
✅ nox -s typecheck passes with 0 errors
✅ nox -s lint passes with 0 warnings
✅ Test coverage >=97%
✅ PR reviewed by Brent (or Jeff for critical items)
✅ Implementation notes added to this document

MILESTONE SUCCESS CRITERIA (DETAILED)

M1: MVP (Day 7) - Minimally Usable for Source Code

End-to-end verification command sequence:

# 1. Create an action
cat > /tmp/test_action.yaml <<EOF
name: local/test-action
description: MVP test action
strategy_actor: openai/gpt-4
execution_actor: openai/gpt-4
definition_of_done: "All files created successfully"
EOF
agents [--data-dir PATH] [--config-path PATH] action create --config /tmp/test_action.yaml
agents [--data-dir PATH] [--config-path PATH] action available local/test-action

# 2. Register a git resource (built-in git-checkout type)
agents [--data-dir PATH] [--config-path PATH] resource add git-checkout local/main-repo \
  --path /path/to/repo \
  --branch main  # Optional; default is main per spec

# 3. Create project and link resource
agents [--data-dir PATH] [--config-path PATH] project create local/test-project
agents [--data-dir PATH] [--config-path PATH] project link-resource local/test-project local/main-repo

# Note: project link-resource is defined in Section 4 (B3.cli)

# 4. Use action to create plan
agents [--data-dir PATH] [--config-path PATH] plan use local/test-action local/test-project

# 5. Execute plan (sandbox created, changes made)
agents [--data-dir PATH] [--config-path PATH] plan execute <plan_id>

# 6. Review diff
agents [--data-dir PATH] [--config-path PATH] plan diff <plan_id>

# 7. Apply changes
agents [--data-dir PATH] [--config-path PATH] plan apply <plan_id>

# 8. Verify changes in repo
cd /path/to/repo && git log -1  # Shows CleverAgents commit

Technical Criteria:

Plan and Action records persist to SQLite database.
Phase transitions (ACTION → STRATEGIZE → EXECUTE → APPLY → APPLIED) work correctly.
Git worktree sandbox creates isolated working directory.
Changes in sandbox do not affect original until Apply.
At least 3 automation levels work (manual mode minimum).
Error handling produces actionable messages.
Test coverage remains >=97%.

M3: Full Plan Lifecycle with Actors (Day 14)

End-to-end verification:

# Create actor YAML file
cat > my_actor.yaml <<EOF
version: "3"
name: my_coder
namespace: local
type: llm
model: openai/gpt-4
temperature: 0.7
system_prompt: "You are a helpful coding assistant."
EOF

# Load actor
agents [--data-dir PATH] [--config-path PATH] actor add --file ./my_actor.yaml

# Create action using custom actor
cat > /tmp/custom_action.yaml <<EOF
name: local/custom-action
strategy_actor: local/my_coder
execution_actor: local/my_coder
definition_of_done: "Code written and tests pass"
EOF
agents [--data-dir PATH] [--config-path PATH] action create --config /tmp/custom_action.yaml --available

# Use and execute (should use custom actor)
agents [--data-dir PATH] [--config-path PATH] plan use local/custom-action local/test-project
agents [--data-dir PATH] [--config-path PATH] plan execute <plan_id>

# Verify multi-file generation
agents [--data-dir PATH] [--config-path PATH] plan artifacts <plan_id>  # Should show multiple files

Technical Criteria:

Actor YAML files parse and validate correctly.
Actors compile to LangGraph StateGraphs.
Inline skill code executes in sandboxed environment.
Built-in file skills (read/write/edit/delete) work.
ChangeSet built from skill invocations (not parsed from output).
Validation pipeline runs (syntax check, lint, tests).
Multi-file generation produces correct ChangeSet.
MCP skill adapter can connect to external servers (basic).

M4: Decision Tree & Correction (Day 21)

End-to-end verification:

# Execute a plan to generate decisions
agents [--data-dir PATH] [--config-path PATH] plan use local/complex-action local/large-project
agents [--data-dir PATH] [--config-path PATH] plan execute <plan_id>

# View decision tree
agents [--data-dir PATH] [--config-path PATH] plan tree <plan_id>
# Output shows:
# ├── [prompt_definition] "Build user authentication"
# │   ├── [strategy_choice] "Use JWT tokens" (confidence: 0.85)
# │   │   └── [subplan_spawn] "Create token service" → subplan_01ABC
# │   └── [implementation_choice] "Store tokens in Redis"

# Explain a decision
agents [--data-dir PATH] [--config-path PATH] plan explain <decision_id>
# Shows: question, chosen_option, alternatives, rationale, context

# Add and list project invariants
agents [--data-dir PATH] [--config-path PATH] invariant add --project local/large-project "Use session cookies"
agents [--data-dir PATH] [--config-path PATH] invariant list --project local/large-project

# Correct a decision (dry run first)
agents [--data-dir PATH] [--config-path PATH] plan correct <decision_id> --mode=revert --guidance "Use session cookies instead of JWT" --dry-run
# Shows impact: 3 decisions, 1 subplan affected

# Execute correction
agents [--data-dir PATH] [--config-path PATH] plan correct <decision_id> --mode=revert --guidance "Use session cookies instead of JWT"
# Re-executes from that point

# Verify new outcome
agents [--data-dir PATH] [--config-path PATH] plan tree <plan_id>
# Shows corrected decision and regenerated downstream work

Technical Criteria:

Decisions recorded during Strategize with full context snapshot.
Decision tree persists to database.
agents [--data-dir PATH] [--config-path PATH] plan tree displays ASCII tree correctly.
agents [--data-dir PATH] [--config-path PATH] plan explain shows all decision details.
Correction in revert mode:
- Archives old decisions.
- Rolls back sandbox to checkpoint.
- Re-executes from decision point.
- Generates new downstream decisions.
Correction in append mode creates fix subplan.
History preserved for comparison.

M5: Subplans & Parallel Execution (Day 25)

End-to-end verification:

# Execute plan that spawns multiple subplans
agents [--data-dir PATH] [--config-path PATH] plan use local/refactor-action local/monorepo
agents [--data-dir PATH] [--config-path PATH] plan execute <plan_id>

# View subplan tree
agents [--data-dir PATH] [--config-path PATH] plan tree <plan_id>
# Shows:
# ├── [root] Refactor codebase
# │   ├── [subplan] Refactor auth module (status: COMPLETE)
# │   ├── [subplan] Refactor api module (status: PROCESSING)
# │   └── [subplan] Refactor utils module (status: QUEUED)

# Check status until complete
agents [--data-dir PATH] [--config-path PATH] plan status <plan_id>

# Verify merged results
agents [--data-dir PATH] [--config-path PATH] plan diff <plan_id>  # Shows merged changes from all subplans

Technical Criteria:

SUBPLAN_SPAWN decisions created during Strategize.
Subplans actually spawned during Execute.
Sequential subplan execution works (one at a time).
Parallel subplan execution works (with max_parallel limit).
Each subplan has isolated sandbox.
Three-way merge combines non-conflicting changes.
Merge conflicts detected and marked.
Parent plan tracks all subplan statuses.
A plan with 10+ subplans completes successfully.

M6: Large Project Handling (Day 30)

End-to-end verification:

# Index a large project (10,000+ files)
agents [--data-dir PATH] [--config-path PATH] project create local/large-project
agents [--data-dir PATH] [--config-path PATH] resource add git-checkout local/large-repo \
  --path /path/to/large/repo \
  --branch main  # Optional; default is main per spec
agents [--data-dir PATH] [--config-path PATH] project link-resource local/large-project local/large-repo

# Note: project link-resource is defined in Section 4 (B3.cli)

# Verify indexing handles scale
agents [--data-dir PATH] [--config-path PATH] project show local/large-project
# Shows: 15,247 files indexed, 2.3M tokens

# Execute complex hierarchical task
cat > /tmp/port_action.yaml <<EOF
name: local/port-to-typescript
strategy_actor: local/architect
execution_actor: local/coder
definition_of_done: "All Python files converted to TypeScript with tests"
EOF
agents [--data-dir PATH] [--config-path PATH] action create --config /tmp/port_action.yaml --available

agents [--data-dir PATH] [--config-path PATH] plan use local/port-to-typescript local/large-project
agents [--data-dir PATH] [--config-path PATH] plan execute <plan_id>

# Monitor hierarchical decomposition
agents [--data-dir PATH] [--config-path PATH] plan tree <plan_id>
# Shows multi-level hierarchy:
# ├── Root: Port codebase to TypeScript
# │   ├── Phase 1: Core modules (3 subplans)
# │   │   ├── Port auth module (5 subplans)
# │   │   │   ├── Convert auth types
# │   │   │   ├── Convert auth handlers
# │   │   │   └── ...
# │   ├── Phase 2: API layer (4 subplans)
# │   └── Phase 3: Integration tests (2 subplans)

# Correct mid-level decision if needed
agents [--data-dir PATH] [--config-path PATH] plan correct <module_decision_id> --mode=revert --guidance "Use Zod instead of io-ts for validation"
# Only affected module and its subplans recompute

# Complete and apply
agents [--data-dir PATH] [--config-path PATH] plan status <plan_id>
agents [--data-dir PATH] [--config-path PATH] plan apply <plan_id>

Technical Criteria:

Projects with 10,000+ files index without timeout.
Context window management works (hot/warm/cold tiers).
Hierarchical decomposition creates 4+ levels of subplans.
Decision correction at any level recomputes only affected subtree.
Parallel execution scales to 10+ concurrent subplans.
Memory usage stays bounded (lazy context loading).
A realistic porting task (500 file Python → TypeScript) completes autonomously.

M6 SUCCESS CRITERIA (Day 30):

10,000+ file project indexes with bounded memory and hot/warm/cold tiering.
Hierarchical decomposition reaches 4+ levels with correction limited to affected subtree.
Parallel execution scales to 10+ subplans with merge and conflict handling.
Autonomous porting task completes with validation and review gates.
nox passes with coverage >=97% including large-project suites.

QUICK REFERENCE: TASK DEPENDENCIES

LEGEND:
  ───► = Sequential dependency (must complete before next)
  ═══► = Parallel tracks that can proceed simultaneously
  ⊕    = Merge point (all parallel tracks must complete)

WEEK 1 CRITICAL PATH:

DAY 1-2: DATA LAYER
┌─────────────────────────────────────────────────────────────────┐
│  [Jeff] A5.alpha DB migrations ═══► [Luis] A5.beta ORM models    │
│              │                           │                       │
│              └───────────⊕───────────────┘                       │
│                          │                                       │
│              [Jeff] A5.gamma Repos + Service + DI                │
│                          │                                       │
│              [Rui] A5.tests Persistence suites                   │
└─────────────────────────────────────────────────────────────────┘

DAY 1-3: RESOURCE LAYER (PARALLEL)
┌─────────────────────────────────────────────────────────────────┐
│  [Hamza] B1.core Domain Models                                  │
│              │                                                   │
│              ▼                                                   │
│  [Hamza] B2.persistence + B2.service + B3.cli                   │
└─────────────────────────────────────────────────────────────────┘

DAY 3-5: SANDBOX LAYER
┌─────────────────────────────────────────────────────────────────┐
│  [Luis] B4.sandbox strategy + manager ═══► [Hamza] git_worktree  │
│              │                           │                       │
│              └───────────⊕───────────────┘                       │
│                          │                                       │
│              [Luis] B4.sandbox copy_on_write stub                │
└─────────────────────────────────────────────────────────────────┘

DAY 4-7: ACTOR/SKILL LAYER
┌─────────────────────────────────────────────────────────────────┐
│  [Aditya] C1.schema/C1.examples Actor Schema                    │
│              │                                                   │
│              ▼                                                   │
│  [Jeff] C2.legacy Drop v2 actor configs                          │
│              │                                                   │
│              ▼                                                   │
│  [Aditya+Jeff] C2.loader/C2.compiler Actor Compiler             │
│              │                                                   │
│  [Jeff] C3.protocol/C3.context/C3.inline ═══► [Aditya] C7.mcp   │
└─────────────────────────────────────────────────────────────────┘

DAY 6-9: CHANGE TRACKING LAYER
┌─────────────────────────────────────────────────────────────────┐
│  [Luis] C5.model/C5.router Change Model + Router                │
│              │                                                   │
│              ▼                                                   │
│  [Luis] C5.diff + C6.pipeline Validation Pipeline               │
└─────────────────────────────────────────────────────────────────┘

DAY 8: M1 MERGE POINT ⊕
┌─────────────────────────────────────────────────────────────────┐
│  All tracks converge:                                           │
│  - Plan lifecycle (A) + Resources (B) + Actors (C) + Skills     │
│  - End-to-end verification of MVP criteria                      │
│  - All tests must pass                                          │
└─────────────────────────────────────────────────────────────────┘

WEEK 2: INTEGRATION + DECISIONS
┌─────────────────────────────────────────────────────────────────┐
│  [Jeff+Luis] C9 Plan-Actor Integration                          │
│              │                                                   │
│              ▼                                                   │
│  [Hamza] D1.domain/D2.service/D3.cli Decisions                  │
│              │                                                   │
│              ▼                                                   │
│  [Luis] E1 Subplan Model                                        │
└─────────────────────────────────────────────────────────────────┘

DAY 14: M3 MERGE POINT ⊕
┌─────────────────────────────────────────────────────────────────┐
│  Full plan lifecycle with actors verified                       │
│  Multi-file generation working                                  │
│  Validation pipeline operational                                │
└─────────────────────────────────────────────────────────────────┘

WEEK 3: DECISION CORRECTION + SUBPLANS
┌─────────────────────────────────────────────────────────────────┐
│  [Jeff] D4.revert/D4.append Decision Correction ─┐              │
│                                                  │              │
│  [Jeff+Luis] E2/E3/E4 Subplan Spawning + Merging ┤              │
│                                                  │              │
│  [Hamza] D5.db/D5.repo Decision Persistence ────┘              │
└─────────────────────────────────────────────────────────────────┘

DAY 21: M4 MERGE POINT ⊕
┌─────────────────────────────────────────────────────────────────┐
│  Decision tree viewing and correction working                   │
│  Can correct any decision and recompute affected work           │
└─────────────────────────────────────────────────────────────────┘

WEEK 4: SCALE + SERVER PREP
┌─────────────────────────────────────────────────────────────────┐
│  [Hamza] CTX1.index Context indexing                            │
│  [Luis] G3.semantic validation + perf tuning                    │
│  [Jeff] F0.stubs server connectivity (client-only)              │
└─────────────────────────────────────────────────────────────────┘

DAY 30: M6 TARGET ⊕
┌─────────────────────────────────────────────────────────────────┐
│  Handle 10,000+ file projects                                   │
│  Autonomous language porting with hierarchical subplans         │
│  Decision correction enables efficient iteration                │
└─────────────────────────────────────────────────────────────────┘

SERVER CONNECTIVITY DEFERRAL NOTICE

Server connectivity (WORKSTREAM F) is deferred beyond the 30-day timeline. The server is a separate project—this implementation covers the client only.

The CleverAgents executable (agents) is purely a client application that can:

Run in stand-alone local-only mode (no server required)
Connect to an independently developed CleverAgents server for multi-user/collaborative features

During Days 1-30, client stub infrastructure is delivered via Section 9 (F0.stubs), covering the connect command, client interfaces, local/remote detection, and NotImplementedError stubs.

What is NOT needed by Day 30:

Server implementation (the server is a separate project)
Full client-server API implementation
WebSocket client implementation
Remote plan execution requests
Authentication flow with server
Permission system integration

The client code should be structured so that adding server connectivity later is straightforward, but no functional server communication code is required for the 30-day milestone. The server will be developed as a separate project.

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CleverAgents Implementation Plan

CRITICAL: Execute These Rules Without Exception

CONTINUOUS CHECKLIST AND KNOWLEDGE STEWARDSHIP (MANDATORY)

CleverAgents Vision

Key Concepts

Objectives and Guiding Principles

Core Architectural Requirements

Continuous Testing and Documentation Policy

Completion Criteria

Architecture Overview

Plan Lifecycle Phases

Plan States (Per Phase)

Key Architectural Components

Namespace Rules

Configuration Philosophy

Environment Variables for Testing

Current Environment Variables

Development Log

Phase 0: Discovery and Requirements Elaboration (Python Tooling)

Phase 0 Notes

Phase 1: Target Architecture Definition

Phase 1 Notes

Phase 2: Runtime Foundation (Completed Work)

Completed Infrastructure

Phase 2 Notes (Preserved from Previous Work)

Implementation Roadmap

Milestone Overview

Critical Path to 7-Day MVP (Source Code Only)

Parallel Workstreams

Quick Reference for Development

Tool Commands

Key Files and Their Purpose

Environment Variables (CLEVERAGENTS_* only)

Schedule Adhereance

2026-02-12 (Day 2 since kickoff on 2026-02-11)

Implementation Checklist

Updated Team Assignments (by Expertise)

Work Assignment Philosophy

Jeff's Critical Path Task Summary (Day-by-Day)

Updated Timeline Targets

CRITICAL: Server Connectivity Policy

Critical Path Analysis

Parallel Workstream Allocation

Parallel Workstreams Structure

Section 0: Quality Automation Setup [WORKSTREAM Q - Brent Lead]

Section 1: Completed Foundation (Phases 0-1) [PRESERVED]

Section 2: Preserved Work from Previous Implementation [PRESERVED]

Section 3: Plan Lifecycle [WORKSTREAM A - Luis Lead]

Section 4: Projects & Resources [WORKSTREAM B - Hamza Lead]

Section 5: Actors, Skills & Tool Execution [WORKSTREAM C - Aditya Lead]

Section 6: Execution Pipeline, Decisions & Invariants [M3-M4]

Section 7: Subplans & Parallelism [M5]

Section 8: Large Project Autonomy & Context [M6]

Section 9: Server Connectivity (Stubs Only) [Beyond Day 30]

Section 10: Async Infrastructure & Later-Stage Quality Work [Various Leads]

Section 11: Security & Safety [WORKSTREAM F - Luis + Brent]

Section 12: Session & Provider Fixes [WORKSTREAM G - Hamza]

Section 13: Additional CLI Commands & UX [Days 10-14]

Section 14: Concurrency & Cleanup [Days 12-14]

Section 16: Context Indexing [Days 15-17]

Section 17: Skill Registry [Days 17-18]

Section 18: Deferred Work

Timeline Summary

TEAM ROLES AND ASSIGNMENTS

Week 1 (Days 1-7) - MVP Target (Source Code Only)

Week 2 (Days 8-14) - M3 Complete + Plan-Actor Integration

Week 3 (Days 15-21) - M4 Target (Decision Tree + Correction)

Week 4 (Days 22-30) - M6 Target (Large Project Autonomy - LOCAL MODE ONLY)

Week 5 (Days 31-35) - M7 Target (Server Connectivity - Client Side Only)

Week 6 (Days 36-40) - M8 Target (Full Feature Set + Polish)

Continuous Tasks (Throughout)

Critical Path Dependencies

Risk Mitigation

Definition of Done (Each Task)

MILESTONE SUCCESS CRITERIA (DETAILED)

M1: MVP (Day 7) - Minimally Usable for Source Code

M3: Full Plan Lifecycle with Actors (Day 14)

M4: Decision Tree & Correction (Day 21)

M5: Subplans & Parallel Execution (Day 25)

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