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fix(test): remove skip guard and soft assertions from scientific paper E2E test #893

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opened 2026-03-13 23:46:23 +00:00 by freemo · 0 comments

freemo commented

2026-03-13 23:46:23 +00:00

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Commit Message: fix(test): remove skip guard and soft assertions from scientific paper E2E test
Branch: fix/integration-paper-e2e-skip-guard

Background

The scientific paper E2E test (robot/scientific_paper_e2e_test.robot, 283 lines) contains multiple failure-masking patterns that allow tests to pass green even when the underlying functionality is broken.

Problems Identified

Skip guard in Suite Setup (lines 280–282): Require OpenAI Key silently skips the entire suite when OPENAI_API_KEY is absent. Robot Framework treats skipped tests as non-failures (exit code 0), so CI reports green.
Unchecked return code (line 73): ${rc_ok}= Run Keyword And Return Status Should Be Equal As Integers ${result.rc} 0 captures the RC check result as a boolean but never asserts on it. The test cannot fail on a non-zero exit code.
Soft LaTeX presence check (lines 137–145): LaTeX file existence is checked via Run Keyword And Return Status, and if absent, the test merely logs a warning and continues — all subsequent LaTeX-dependent assertions are silently skipped.
Soft latex_source context field check (lines 158–163): Same pattern — Run Keyword And Return Status captures whether the context field exists, then skips assertions if it doesn't.
Dead stderr check (line 130): Should Not Contain ${result.stderr} Error is meaningless because stderr=STDOUT was used on line 127, making ${result.stderr} always empty.

Acceptance Criteria

Require OpenAI Key skip guard is removed from Suite Setup
Line 73: Run Keyword And Return Status is replaced with a direct Should Be Equal As Integers ${result.rc} 0 assertion
Lines 137–145: LaTeX file existence uses File Should Exist directly (hard failure)
Lines 158–163: latex_source context field check uses a direct assertion
Line 130: Dead stderr check is either removed or stderr=STDOUT is removed so stderr is actually captured
nox -s integration_tests passes
No new Run Keyword And Return Status used as soft assertion remains

Subtasks

Remove Require OpenAI Key from Suite Setup and the keyword definition if it exists locally
Replace Run Keyword And Return Status RC check with direct assertion on line 73
Convert LaTeX file soft-check to hard File Should Exist assertion
Convert latex_source context field soft-check to hard assertion
Fix or remove dead stderr check on line 130
Run nox -s integration_tests and verify the test suite passes
Verify coverage >= 97% via nox -s coverage_report

Definition of Done

This issue is complete when:

All subtasks above are completed and checked off.
A Git commit is created where the first line of the commit message matches the Commit Message in Metadata exactly, followed by a blank line, then additional lines providing relevant details about the implementation.
The commit is pushed to the remote on the branch matching the Branch in Metadata exactly.
The commit is submitted as a pull request to master, reviewed, and merged before this issue is marked done.

## Metadata - **Commit Message**: `fix(test): remove skip guard and soft assertions from scientific paper E2E test` - **Branch**: `fix/integration-paper-e2e-skip-guard` ## Background The scientific paper E2E test (`robot/scientific_paper_e2e_test.robot`, 283 lines) contains multiple failure-masking patterns that allow tests to pass green even when the underlying functionality is broken. ### Problems Identified 1. **Skip guard in Suite Setup** (lines 280–282): `Require OpenAI Key` silently skips the entire suite when `OPENAI_API_KEY` is absent. Robot Framework treats skipped tests as non-failures (exit code 0), so CI reports green. 2. **Unchecked return code** (line 73): `${rc_ok}= Run Keyword And Return Status Should Be Equal As Integers ${result.rc} 0` captures the RC check result as a boolean but **never asserts on it**. The test cannot fail on a non-zero exit code. 3. **Soft LaTeX presence check** (lines 137–145): LaTeX file existence is checked via `Run Keyword And Return Status`, and if absent, the test merely logs a warning and continues — all subsequent LaTeX-dependent assertions are silently skipped. 4. **Soft `latex_source` context field check** (lines 158–163): Same pattern — `Run Keyword And Return Status` captures whether the context field exists, then skips assertions if it doesn't. 5. **Dead stderr check** (line 130): `Should Not Contain ${result.stderr} Error` is meaningless because `stderr=STDOUT` was used on line 127, making `${result.stderr}` always empty. ## Acceptance Criteria - [ ] `Require OpenAI Key` skip guard is removed from Suite Setup - [ ] Line 73: `Run Keyword And Return Status` is replaced with a direct `Should Be Equal As Integers ${result.rc} 0` assertion - [ ] Lines 137–145: LaTeX file existence uses `File Should Exist` directly (hard failure) - [ ] Lines 158–163: `latex_source` context field check uses a direct assertion - [ ] Line 130: Dead `stderr` check is either removed or `stderr=STDOUT` is removed so stderr is actually captured - [ ] `nox -s integration_tests` passes - [ ] No new `Run Keyword And Return Status` used as soft assertion remains ## Subtasks - [ ] Remove `Require OpenAI Key` from Suite Setup and the keyword definition if it exists locally - [ ] Replace `Run Keyword And Return Status` RC check with direct assertion on line 73 - [ ] Convert LaTeX file soft-check to hard `File Should Exist` assertion - [ ] Convert `latex_source` context field soft-check to hard assertion - [ ] Fix or remove dead stderr check on line 130 - [ ] Run `nox -s integration_tests` and verify the test suite passes - [ ] Verify coverage >= 97% via `nox -s coverage_report` ## Definition of Done This issue is complete when: - All subtasks above are completed and checked off. - A Git commit is created where the **first line** of the commit message matches the Commit Message in Metadata exactly, followed by a blank line, then additional lines providing relevant details about the implementation. - The commit is pushed to the remote on the branch matching the **Branch** in Metadata exactly. - The commit is submitted as a **pull request** to `master`, reviewed, and **merged** before this issue is marked done.

freemo added this to the v3.2.0 milestone

2026-03-13 23:46:23 +00:00

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2026-03-13 23:46:23 +00:00

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2026-03-13 23:51:29 +00:00

#892 Epic: Remove Failure-Masking Patterns from Integration Tests

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2026-03-13 23:52:05 +00:00

freemo referenced this issue from a pull request that will close it,

2026-03-13 23:54:53 +00:00

fix(test): remove skip guard and soft assertions from scientific paper E2E test #906

freemo referenced this issue from a commit

2026-03-13 23:54:58 +00:00

fix(test): remove skip guard and soft assertions from scientific paper E2E test

freemo

2026-03-14 00:56:37 +00:00

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docs/changelog-plan-fix-4197

spec/milestone-plan-section

docs/update-changelog-recent-features

fix/test-infra-remove-redundant-python-variable-robot-files

timeline/day-104-2026-04-14-cycle2

fix/bdd-feature-file-tags

auto-arch-13/spec-default-automation-profile

docs/auto-docs-cycle-1-2026-04-12

docs/cycle-1-git-worktree-sandbox

spec/architecture-critical-gap-fixes

docs/timeline-day-104-auto-time-2

auto-arch-1/add-v380-v390-milestone-plan

docs/developer-setup-guide

fix/auto-profile-spec-prose-description

auto-arch-10/spec-tui-a2a-integration-layer

spec/resource-event-types-clarification

auto-docs-4/changelog-and-observability

auto-arch-4/adr-049-layered-boundary-enforcement

docs/a2a-protocol-autonomy-hardening

auto-arch-9/spec-v3.8.0-milestone-plan

docs/auto-docs-3-reference-index

auto-arch-7/spec-apply-git-worktree

docs/timeline-day104-cycle1-auto-time-4

docs/auto-docs-cycle-1-changelog-updates

auto-arch-6/adr-049-spec-restructuring

docs/auto-docs-1-v340-acms-context-management

docs/auto-docs-1-v320-v330-cli-reference

auto-arch-5/v3.9.0-milestone-plan

test/create-scripts

auto-time-1-day104

timeline/day-104-2026-04-14

docs/auto-time-4-day103-cycle5

auto-time-3-day103-cycle4

auto-docs-5-architecture-overview

spec/three-way-merge-strategy-v3.3.0

spec/checkpoint-system-v3.3.0

auto-docs-4-api-docs-update

auto-docs-1-changelog-expansion

spec/invariant-management-system-v3.2.0

pr-8289

spec/plan-correction-engine-v3.2.0

spec/layered-architecture-boundary-policy

spec/tui-materializer-a2a-integration-v3.7.0

spec/decision-recording-system-v3.2.0

docs/auto-docs-1-milestone-overview

pr-7484

pr-4212

auto-arch-3/v3.8.0-milestone-plan

auto-docs-6/troubleshooting-and-config

auto-time-1-day103-session5

auto-docs-5/contributor-guide-and-readme

docs/plan-tree-ulid-examples

docs/m3-spec-clarify-path-datetime-plugin-contracts

docs/auto-docs-cycle-10-diagnostics-ref

auto-docs-3/user-guide-and-architecture

docs/cycle-7-changelog-update

spec/reconciliation-failure-behavior

auto-docs-2/api-documentation

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auto-docs-1/release-notes-v3.0-v3.1

spec/update-validation-attach-project-delete

spec/architecture-cycle2-impl-clarifications

auto-arch-1/adr-049-052-violations

auto-time-1-day103

docs/auto-docs-cycle-13-updates

docs/timeline-day-102-auto-time

timeline/day-103-2026-04-13

spec/arch-invariant-cli-completeness

spec/update-cycle1-validation-attach-project-delete

docs/add-session-management-showcase

spec/arch-sandbox-path-correction-cycle9

spec/architecture-v380-milestone-plan

docs/auto-docs-cycle-12-updates

docs/cycle-1-validation-gate-fix

docs/2026-04-08-unreleased-changelog

docs/auto-docs-cycle-2-2026-04-10

docs/session-4615-2026-04-08-cycle1

feat/issue-6361-shell-safety-service-tui

spec/architecture-cycle-25-new-features

fix/issue-6345-automation-profile-add-output

docs/timeline-day-102-2026-04-12

docs/cycle-2-git-worktree-acms-hydrator

spec/arch-sandbox-cleanup-discovery

docs/timeline-day96-2026-04-08

docs/auto-docs-cycle-11

spec/fix-sandbox-strategy-protocol-name

spec/arch-acms-tier-hydration

fix/v3.4.0/context-settings-defaults

docs/add-example-repl-and-actor-run

docs/auto-docs-cycle-10-updates

docs/session-4-2026-04-08-updates

docs/showcase-all-examples-consolidated

docs/timeline-day-97

docs/acms-context-hydrator-cycle2

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timeline/day-101-2026-04-11

docs/timeline-day99-2026-04-09-v2

docs/auto-docs-cycle-2-worktree-acms

spec/architecture-v3.8.0-milestone-plan

docs/api-lsp-acms-reference

improvement/agent-bug-hunt-pool-supervisor-yaml-syntax-fix

spec/project-delete-deleted-at-field

spec/architecture-provider-registry-tui-materializer

spec/document-reconciliation-blocked-error-5942

fix/issue-7482-git-log-injection

spec/devcontainer-auto-discovery-schema

feat/issue-6350-conversation-content-pruning

docs/update-module-guides-2026-04-10

timeline/day-100-2026-04-10-auto-time-cycle1

timeline/day-99-2026-04-09-auto-time-v2

docs/cycle-3-module-guides

timeline/day-99-2026-04-09-auto-time

pr-4226

spec/additional-llm-providers-gemini-groq-cohere-together-ollama-mistral

spec/document-context-tier-hydrator-6175

docs/timeline-day99-2026-04-09

spec/invariant-cli-clarifications

docs/add-example-project-init-and-context-management

spec/reconciliation-blocked-error-documentation

spec/fix-invariant-precedence-reference-5861

spec/fix-plan-correct-accepts-plan-id-5558

spec/fix-validation-attach-synopsis-5328

docs/timeline-day-99-cycle-1

docs/timeline-day-99-cycle-2

fix/actor-context-list-regex-arg

docs/timeline-day-99-cycle-3

spec/arch-security-mode-init

docs/auto-docs-cycle-9-updates

fix-resource-fix-resource-remove-to-check-correct-edge-table

feat/issue-6434-tui-env-var-expansion

fix/issue-6321-plan-prompt-timing-field

fix/issue-6322-resource-add-url-flag

feat/issue-6348-sessions-screen

spec/plan-show-command

temp

feat/harden-label-restrictions-1775753628

spec/invariant-reconciliation-failure-behavior

spec/add-reconciliation-failure-behavior-5942

spec/architecture-corrections-cycle3

spec/checkpoint-trigger-names-and-config-key-fix

spec/fix-ai-provider-interface-5801

spec/azure-api-version-default-update

docs/auto-docs-writer-cycle1-labels

spec/fix-resource-type-yaml-format-5622

spec/add-plan-revert-resume-commands-5574

docs/auto-docs-cycle-1-2026-04-09

spec/plan-correct-plan-id-or-decision-id-5558

spec/fix-subgraph-node-actor-ref-field-5427

issue/5284-master-ci-fix

timeline/day-99-2026-04-09-v2

merge-me

docs/session-3377-initial-docs-update

fix/llm-provider-subpackage-exports

spec/arce-acronym-and-tui-keybinding-fixes

spec/architecture-corrections-cycle2

spec/architecture-corrections-cycle1

docs/cycle-1-updates

spec/tui-clarifications-session-export-persona

docs/session-4940-2026-04-08-cycle1

spec/architecture-milestone-plan-v3.2-v3.7

docs/session-4743-2026-04-08-cycle1

docs/timeline-day-98

fix/plan-lifecycle-service-rollback-method

docs/timeline-day98-2026-04-08-v2

docs/add-example-action-and-plan-management

docs/session-2026-04-06-updates

docs/ca-docs-writer-v3.8.1-2026-04-05

fix/session-tell-stub-missing-panels-and-actor-execution

improvement/agent-arch-guard-clone-failure-handling

improvement/agent-test-infra-health-spam-fix-v2

fix-tdd-invert-non-assertion-exceptions

improvement/agent-arch-guard-clone-failure

bugfix/3472-fix-tdd-inversion-logic

bugfix/989-fix-persistence-json-decode-error

improvement/agent-supervisor-tracking-labels-v2

docs/timeline-day95-v2

docs/timeline-day95-final

docs/update-lsp-api-and-changelog

fix/lsp-resource-handler-module-missing

docs/timeline-day95-final-2026-04-05

fix/a2a-plan-correct-rollback-wiring

docs/add-lsp-api-and-changelog-2026-04-05

fix/tool-registry-validation-type-discriminator

docs/v3.7.0-documentation-update

docs/ca-docs-writer-2026-04-05-cycle2

fix/invariant-set-merge-action-scope

docs/unreleased-feature-docs

fix/concurrency-cost-tracker-record-usage-race-condition

improvement/agent-ca-test-infra-improver-failure-handling

docs/update-changelog-mcp-plan-ci-2026-04-05

improvement/agent-pr-reviewer-milestone-prioritization

docs/timeline-day95-refresh-2026-04-05

improvement/agent-mandatory-labels-tracking-issues

docs/api-domain-providers-changelog-2026-04-05

docs/ca-docs-writer-2026-04-05

docs/timeline-day95-refresh

fix/skill-add-include-validation

docs/timeline-day-95-2026-04-05-update3

docs/timeline-day-95-2026-04-05-update2

docs/ci-incident-runbook-2597

improvement/agent-ca-test-infra-improver-worker-api-mode

docs/shell-safety-api-and-readme-highlights

docs/timeline-day-55-2026-04-04-v2

docs/timeline-day-55-2026-04-04

docs/timeline-day54-update3

improvement/agent-ca-test-infra-improver-fixes

spec/restructure-monolithic-to-split

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fix/1473-plan-cancel

fix/1425-test

fix/1426-config

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test/int-wf16-devcontainer

feature/m8-tui-persona-export

feature/m7-post-resource-equivalence

test/e2e-m4-acceptance

feature/m6-tantivy-backend

feature/m6-estimation

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feature/observability-prometheus-audit

feat/server-auth-namespace

feature/m8-session-editing

feature/llm-actor-subplan-wiring

feature/m8-tui-first-run-actor-selection

feature/m8-tui-conversation-block-catalog

feature/m8-tui-settings-screen

feature/m7-e2e-porting

feature/m6-estimation-historical-stats

feature/m8-tui-persona-export-import

feature/m8-tui-sessions-screen

feature/m7-graph-backend

feature/m8-tui-block-context-menu

feature/m8-tui-tool-call-expand

feature/m4-missing-builtin-tools

docs/v3.7.0-release-docs

feature/m8-tui-session-export

test/e2e-wf15-disaster-recovery

test/e2e-wf03-refactoring

test/e2e-m3-acceptance

feature/m8-tui-prompt-history

feature/m8-tui-actor-thought-block-rendering

bugfix/m6-build-hierarchy-child-ids

feature/resource-inheritance-wiring

test/e2e-wf09-session

test/e2e-wf06-doc-generation

test/e2e-wf08-cloud-infra

test/e2e-wf02-test-generation

test/e2e-wf13-custom-profile

test/e2e-wf11-graph-actor

test/e2e-wf01-hello-world

test/int-wf17-explicit-container

test/int-wf12-hierarchical

test/int-wf15-disaster-recovery

test/int-wf13-custom-profile

test/int-wf03-refactoring

test/int-wf11-graph-actor

test/int-wf10-batch

test/int-wf09-session

feature/m3-tdd-issue-consistency-gate

feature/m3-invariant-enforcement-strategize

test/int-wf18-container-clone

test/int-wf01-hello-world

feature/m6-diagnostic-dashboard-health-categories

feature/m6-cli-polish

fix/e2e-db-isolation

feature/m7-post-tui

feature/m9-asgi-endpoint

feature/m7-post-server

tdd/m7-audit-session-race

tdd/m3-skill-add-regression

feature/m9-remote-repos

feature/fs-mount-file-types

tdd/container-resolve-crash

test/e2e-m1-acceptance

test/e2e-m2-acceptance

eugen.thaci-patch-3

eugen.thaci-patch-2

eugen.thaci-patch-1

aditya-fix-latest

feature/m4-secret-masking-llm-context

aditya-fix

refactor/m3-replace-mktemp

refactor/m3-remove-unittest-mock-integration

refactor/m3-remove-robot-mock-imports

refactor/m3-remove-mock-llm-integration

docs/improved-menu-adr

feature/m7-post-auth

feature/m3-fix-resource-bootstrap

feature/post-safety-profile-tests

integration/batch-2026-03-02

feat/slipcover

docs/safety-profile-spec-composition

integrate/freemo-batch-1

feature/m4-error-recovery

feature/m4-security-template

feature/m3-validation-pipeline

develop-aditya-2

feature/m3-diff-review

feature/m3-validation-apply

feature/m6-acp-stubs

feature/m4-correction-flows

feature/m1-plan-execute-runtime

feature/m4-security-exceptions

feature/m4-definition-of-done

feature/m4-correction-model

feature/m1-apply-pipeline

feature/m5-automation-profiles

feature/m2-lsp-stubs

feature/m3-invariants

feature/m1-actor-runtime

feature/docs-v2-restore

feature/m6-perf-scale

feature/m6-validation-edge

feature/m3-session-cli

feature/m1-persistence-tests-robot

feature/m3-config-cli

feature/m1-cli-tests-robot

feature/m5-subplan-tests

feature/m6-review-playbook

feature/aditya-m3-actor-loader

feature/m3-skill-protocol

feature/m4-automation-legacy-cleanup

feature/m3-change-model

feature/m3-skill-git

feature/m3-skill-registry

feature/m4-security-eval

fix/robot-tests

feature/m3-actor-registry

feature/m3-tool-cli

feature/m4-automation-profiles-cli

feature/m2-resource-cli-extensions

feature/m3-actor-loader

feature/m3-tool-domain-robot

feature/m3-skill-domain-robot

feature/m3-skill-cli

feature/m1-resource-db-robot-tests

feature/m3-session-domain-robot

feature/m1-persistence-tests

feature/m1-cli-tests

ten-branches-backup

feature/m3-skill-schema

feature/m3-session-persistence

feature/automation-profiles-and-resource-dag

feature/m1-plan-repo

feature/m1-db-plan-phase-rebaseline

feat/B4-sandbox

feat/B2-cli-wiring

feat/B5-project-persistence

feat/B1-project-data-models

feat/b1-data-models

feat-repo-manager-and-sourcegraph-support

feat/actor-schema

fix/component-isolation-security-fix

feat/ontology-agent

fix/error-handling-security-fix

fix/concurrency-security-fix

fix/serialization-security-fix

fix/server-side-request-forgery-security-fix

fix/file-system-security

fix/template-injection-fix

fix/data-injection-fix

tests/unit-tests

latest/poetry-generator

poetry-generator

config/contract-metadata-extractor

docs/readme-yaml-syntax

config/memory-yaml

fix/double-response

brent-additions

intel_2_demo

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