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feat(acms): operationalize UKO runtime with provenance tracking and temporal versioning #891

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opened 2026-03-13 23:27:53 +00:00 by freemo · 3 comments
freemo commented 2026-03-13 23:27:53 +00:00
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  • Commit Message: feat(acms): operationalize UKO runtime with provenance and temporal versioning
  • Branch: feature/m6-uko-runtime

Background and Context

The specification describes the Universal Knowledge Ontology (UKO) as an "RDF-based, inheritance-driven ontology representing resources at multiple abstraction levels with provenance and temporal versioning." The UKO has four layers: universal foundation, domain specializations, paradigm/format specializations, and technology-specific.

The codebase has UKO infrastructure:

  • domain/models/core/uko.py: UKOPrefix, UKONode, UKOVersion, UKOOntology
  • domain/models/acms/provenance.py: ProvenanceMetadata, ProvenancedTriple, IndexResult
  • application/services/uko_indexer.py: UKO indexing service
  • application/services/uko_loader.py: Ontology loader

However, no existing Forgejo issue tracks the operationalization of this subsystem. The UKO indexer exists but its runtime integration with the ACMS context pipeline — specifically the semantic relationship inference, temporal versioning, and provenance tracking described in the spec — is not tracked.

Expected Behavior

The UKO should:

  1. Maintain an RDF-based ontology that classifies indexed resources
  2. Track provenance metadata (source, confidence, extraction method) for each triple
  3. Support temporal versioning so context strategies can query historical states
  4. Infer implicit relationships from content analysis
  5. Feed classification data into the ACMS context assembly pipeline

Acceptance Criteria

  • UKO indexer produces typed triples with provenance metadata
  • Temporal versioning tracks ontology state across indexing runs
  • ACMS context strategies can query UKO for resource classification
  • Four ontology layers are populated: universal, domain, paradigm, technology
  • Implicit relationship inference runs during indexing
  • UKO data persists across application restarts

Subtasks

  • Verify UKO indexer produces provenance-annotated triples
  • Implement temporal versioning (revision chain) for UKO state
  • Wire UKO query interface into ACMS context strategies
  • Populate four ontology layers during resource indexing
  • Add implicit relationship inference (semantic analysis)
  • Persist UKO graph to storage backend
  • Tests (Behave): Indexing produces typed triples, temporal query, provenance
  • Verify coverage >= 97% via nox -s coverage_report
  • Run nox (all default sessions), fix any errors

Definition of Done

This issue is complete when:

  • All subtasks above are completed and checked off.
  • A Git commit is created where the first line of the commit message matches the Commit Message in Metadata exactly, followed by a blank line, then additional lines providing relevant details about the implementation.
  • The commit is pushed to the remote on the branch matching the Branch in Metadata exactly.
  • The commit is submitted as a pull request to master, reviewed, and merged before this issue is marked done.
## Metadata - **Commit Message**: `feat(acms): operationalize UKO runtime with provenance and temporal versioning` - **Branch**: `feature/m6-uko-runtime` ## Background and Context The specification describes the Universal Knowledge Ontology (UKO) as an "RDF-based, inheritance-driven ontology representing resources at multiple abstraction levels with provenance and temporal versioning." The UKO has four layers: universal foundation, domain specializations, paradigm/format specializations, and technology-specific. The codebase has UKO infrastructure: - `domain/models/core/uko.py`: `UKOPrefix`, `UKONode`, `UKOVersion`, `UKOOntology` - `domain/models/acms/provenance.py`: `ProvenanceMetadata`, `ProvenancedTriple`, `IndexResult` - `application/services/uko_indexer.py`: UKO indexing service - `application/services/uko_loader.py`: Ontology loader However, no existing Forgejo issue tracks the operationalization of this subsystem. The UKO indexer exists but its runtime integration with the ACMS context pipeline — specifically the semantic relationship inference, temporal versioning, and provenance tracking described in the spec — is not tracked. ## Expected Behavior The UKO should: 1. Maintain an RDF-based ontology that classifies indexed resources 2. Track provenance metadata (source, confidence, extraction method) for each triple 3. Support temporal versioning so context strategies can query historical states 4. Infer implicit relationships from content analysis 5. Feed classification data into the ACMS context assembly pipeline ## Acceptance Criteria - [ ] UKO indexer produces typed triples with provenance metadata - [ ] Temporal versioning tracks ontology state across indexing runs - [ ] ACMS context strategies can query UKO for resource classification - [ ] Four ontology layers are populated: universal, domain, paradigm, technology - [ ] Implicit relationship inference runs during indexing - [ ] UKO data persists across application restarts ## Subtasks - [ ] Verify UKO indexer produces provenance-annotated triples - [ ] Implement temporal versioning (revision chain) for UKO state - [ ] Wire UKO query interface into ACMS context strategies - [ ] Populate four ontology layers during resource indexing - [ ] Add implicit relationship inference (semantic analysis) - [ ] Persist UKO graph to storage backend - [ ] Tests (Behave): Indexing produces typed triples, temporal query, provenance - [ ] Verify coverage >= 97% via `nox -s coverage_report` - [ ] Run `nox` (all default sessions), fix any errors ## Definition of Done This issue is complete when: - All subtasks above are completed and checked off. - A Git commit is created where the **first line** of the commit message matches the Commit Message in Metadata exactly, followed by a blank line, then additional lines providing relevant details about the implementation. - The commit is pushed to the remote on the branch matching the **Branch** in Metadata exactly. - The commit is submitted as a **pull request** to `master`, reviewed, and **merged** before this issue is marked done.
freemo added this to the v3.6.0 milestone 2026-03-13 23:30:33 +00:00
freemo commented 2026-03-13 23:30:56 +00:00
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Dependencies / Related Issues:

  • Related: #872 (graph backend — UKO triples need a graph backend for persistence and SPARQL queries)
  • The UKO runtime operationalization depends on a functional graph backend. If #872 is not yet complete, the UKO can use InMemoryGraphBackend as a temporary store.
**Dependencies / Related Issues:** - Related: #872 (graph backend — UKO triples need a graph backend for persistence and SPARQL queries) - The UKO runtime operationalization depends on a functional graph backend. If #872 is not yet complete, the UKO can use `InMemoryGraphBackend` as a temporary store.
freemo self-assigned this 2026-04-02 06:13:59 +00:00
freemo commented 2026-04-02 16:53:56 +00:00
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[Backlog Groomer - groomer-1] 📋 Label state mismatch. This issue has State/Verified but PR #1312 (feat(acms): operationalize UKO runtime with provenance and temporal verification) is open and references this issue. The state should be updated to State/In Review.

**[Backlog Groomer - groomer-1]** 📋 **Label state mismatch.** This issue has `State/Verified` but PR #1312 (`feat(acms): operationalize UKO runtime with provenance and temporal verification`) is open and references this issue. The state should be updated to `State/In Review`.
freemo commented 2026-04-02 17:09:23 +00:00
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PR #1312 reviewed, approved, and merged.

The UKO runtime has been operationalized with:

  • Provenance tracking (sourceResource, validFrom, isCurrent)
  • Temporal versioning via revision chains
  • ACMS context strategy integration via UKOQueryInterface
  • Four-layer ontology population (universal, domain, paradigm, technology)
  • Implicit relationship inference (sibling, containment, dependency)
  • Graph persistence across application restarts

47 BDD scenarios verify all acceptance criteria.

PR #1312 reviewed, approved, and merged. The UKO runtime has been operationalized with: - Provenance tracking (sourceResource, validFrom, isCurrent) - Temporal versioning via revision chains - ACMS context strategy integration via `UKOQueryInterface` - Four-layer ontology population (universal, domain, paradigm, technology) - Implicit relationship inference (sibling, containment, dependency) - Graph persistence across application restarts 47 BDD scenarios verify all acceptance criteria.
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feat/v3.8.0-agent-card-endpoint
docs/auto-docs-cycle-24-showcase-nav
auto-inf-3-consolidate-behave-fixtures
fix/issue-7663-docs-writer-missing
auto-time-1-day103-cycle2
docs/timeline-day-104-auto-time-1
auto-arch-16/spec-xml-prompt-injection-mitigation
bugfix/m4-invariant-persistence
uat-a2a-facade-tests-v350
bugfix/m3-behave-parallel-failed-chunk-logs
bugfix/7664-automation-tracking-label-requirements
docs/auto-time-1-timeline-update-2026-04-14
docs/auto-docs-1-milestone-v3-updates
fix/issue-6344-plan-execute-rich-output
docs/action-config-schema-api
fix/bug-hunt-supervisor-nonexistent-file-preflight
fix/retry-policy-model-missing-fields
docs/validation-gate-empty-run-guard
auto-arch-15/spec-retry-policy-canonical-fields
docs/lockservice-advisory-locking
docs/changelog-plan-fix-4197
spec/milestone-plan-section
docs/update-changelog-recent-features
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timeline/day-104-2026-04-14-cycle2
fix/bdd-feature-file-tags
auto-arch-13/spec-default-automation-profile
docs/auto-docs-cycle-1-2026-04-12
docs/cycle-1-git-worktree-sandbox
spec/architecture-critical-gap-fixes
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auto-arch-1/add-v380-v390-milestone-plan
docs/developer-setup-guide
fix/auto-profile-spec-prose-description
auto-arch-10/spec-tui-a2a-integration-layer
spec/resource-event-types-clarification
auto-docs-4/changelog-and-observability
auto-arch-4/adr-049-layered-boundary-enforcement
docs/a2a-protocol-autonomy-hardening
auto-arch-9/spec-v3.8.0-milestone-plan
docs/auto-docs-3-reference-index
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docs/timeline-day104-cycle1-auto-time-4
docs/auto-docs-cycle-1-changelog-updates
auto-arch-6/adr-049-spec-restructuring
docs/auto-docs-1-v340-acms-context-management
docs/auto-docs-1-v320-v330-cli-reference
auto-arch-5/v3.9.0-milestone-plan
test/create-scripts
auto-time-1-day104
timeline/day-104-2026-04-14
docs/auto-time-4-day103-cycle5
auto-time-3-day103-cycle4
auto-docs-5-architecture-overview
spec/three-way-merge-strategy-v3.3.0
spec/checkpoint-system-v3.3.0
auto-docs-4-api-docs-update
auto-docs-1-changelog-expansion
spec/invariant-management-system-v3.2.0
pr-8289
spec/plan-correction-engine-v3.2.0
spec/layered-architecture-boundary-policy
spec/tui-materializer-a2a-integration-v3.7.0
spec/decision-recording-system-v3.2.0
docs/auto-docs-1-milestone-overview
pr-7484
pr-4212
auto-arch-3/v3.8.0-milestone-plan
auto-docs-6/troubleshooting-and-config
auto-time-1-day103-session5
auto-docs-5/contributor-guide-and-readme
docs/plan-tree-ulid-examples
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spec/update-validation-attach-project-delete
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auto-arch-1/adr-049-052-violations
auto-time-1-day103
docs/auto-docs-cycle-13-updates
docs/timeline-day-102-auto-time
timeline/day-103-2026-04-13
spec/arch-invariant-cli-completeness
spec/update-cycle1-validation-attach-project-delete
docs/add-session-management-showcase
spec/arch-sandbox-path-correction-cycle9
spec/architecture-v380-milestone-plan
docs/auto-docs-cycle-12-updates
docs/cycle-1-validation-gate-fix
docs/2026-04-08-unreleased-changelog
docs/auto-docs-cycle-2-2026-04-10
docs/session-4615-2026-04-08-cycle1
feat/issue-6361-shell-safety-service-tui
spec/architecture-cycle-25-new-features
fix/issue-6345-automation-profile-add-output
docs/timeline-day-102-2026-04-12
docs/cycle-2-git-worktree-acms-hydrator
spec/arch-sandbox-cleanup-discovery
docs/timeline-day96-2026-04-08
docs/auto-docs-cycle-11
spec/fix-sandbox-strategy-protocol-name
spec/arch-acms-tier-hydration
fix/v3.4.0/context-settings-defaults
docs/add-example-repl-and-actor-run
docs/auto-docs-cycle-10-updates
docs/session-4-2026-04-08-updates
docs/showcase-all-examples-consolidated
docs/timeline-day-97
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docs/timeline-day99-2026-04-09-v2
docs/auto-docs-cycle-2-worktree-acms
spec/architecture-v3.8.0-milestone-plan
docs/api-lsp-acms-reference
improvement/agent-bug-hunt-pool-supervisor-yaml-syntax-fix
spec/project-delete-deleted-at-field
spec/architecture-provider-registry-tui-materializer
spec/document-reconciliation-blocked-error-5942
fix/issue-7482-git-log-injection
spec/devcontainer-auto-discovery-schema
feat/issue-6350-conversation-content-pruning
docs/update-module-guides-2026-04-10
timeline/day-100-2026-04-10-auto-time-cycle1
timeline/day-99-2026-04-09-auto-time-v2
docs/cycle-3-module-guides
timeline/day-99-2026-04-09-auto-time
pr-4226
spec/additional-llm-providers-gemini-groq-cohere-together-ollama-mistral
spec/document-context-tier-hydrator-6175
docs/timeline-day99-2026-04-09
spec/invariant-cli-clarifications
docs/add-example-project-init-and-context-management
spec/reconciliation-blocked-error-documentation
spec/fix-invariant-precedence-reference-5861
spec/fix-plan-correct-accepts-plan-id-5558
spec/fix-validation-attach-synopsis-5328
docs/timeline-day-99-cycle-1
docs/timeline-day-99-cycle-2
fix/actor-context-list-regex-arg
docs/timeline-day-99-cycle-3
spec/arch-security-mode-init
docs/auto-docs-cycle-9-updates
fix-resource-fix-resource-remove-to-check-correct-edge-table
feat/issue-6434-tui-env-var-expansion
fix/issue-6321-plan-prompt-timing-field
fix/issue-6322-resource-add-url-flag
feat/issue-6348-sessions-screen
spec/plan-show-command
temp
feat/harden-label-restrictions-1775753628
spec/invariant-reconciliation-failure-behavior
spec/add-reconciliation-failure-behavior-5942
spec/architecture-corrections-cycle3
spec/checkpoint-trigger-names-and-config-key-fix
spec/fix-ai-provider-interface-5801
spec/azure-api-version-default-update
docs/auto-docs-writer-cycle1-labels
spec/fix-resource-type-yaml-format-5622
spec/add-plan-revert-resume-commands-5574
docs/auto-docs-cycle-1-2026-04-09
spec/plan-correct-plan-id-or-decision-id-5558
spec/fix-subgraph-node-actor-ref-field-5427
issue/5284-master-ci-fix
timeline/day-99-2026-04-09-v2
merge-me
docs/session-3377-initial-docs-update
fix/llm-provider-subpackage-exports
spec/arce-acronym-and-tui-keybinding-fixes
spec/architecture-corrections-cycle2
spec/architecture-corrections-cycle1
docs/cycle-1-updates
spec/tui-clarifications-session-export-persona
docs/session-4940-2026-04-08-cycle1
spec/architecture-milestone-plan-v3.2-v3.7
docs/session-4743-2026-04-08-cycle1
docs/timeline-day-98
fix/plan-lifecycle-service-rollback-method
docs/timeline-day98-2026-04-08-v2
docs/add-example-action-and-plan-management
docs/session-2026-04-06-updates
docs/ca-docs-writer-v3.8.1-2026-04-05
fix/session-tell-stub-missing-panels-and-actor-execution
improvement/agent-arch-guard-clone-failure-handling
improvement/agent-test-infra-health-spam-fix-v2
fix-tdd-invert-non-assertion-exceptions
improvement/agent-arch-guard-clone-failure
bugfix/3472-fix-tdd-inversion-logic
bugfix/989-fix-persistence-json-decode-error
improvement/agent-supervisor-tracking-labels-v2
docs/timeline-day95-v2
docs/timeline-day95-final
docs/update-lsp-api-and-changelog
fix/lsp-resource-handler-module-missing
docs/timeline-day95-final-2026-04-05
fix/a2a-plan-correct-rollback-wiring
docs/add-lsp-api-and-changelog-2026-04-05
fix/tool-registry-validation-type-discriminator
docs/v3.7.0-documentation-update
docs/ca-docs-writer-2026-04-05-cycle2
fix/invariant-set-merge-action-scope
docs/unreleased-feature-docs
fix/concurrency-cost-tracker-record-usage-race-condition
improvement/agent-ca-test-infra-improver-failure-handling
docs/update-changelog-mcp-plan-ci-2026-04-05
improvement/agent-pr-reviewer-milestone-prioritization
docs/timeline-day95-refresh-2026-04-05
improvement/agent-mandatory-labels-tracking-issues
docs/api-domain-providers-changelog-2026-04-05
docs/ca-docs-writer-2026-04-05
docs/timeline-day95-refresh
fix/skill-add-include-validation
docs/timeline-day-95-2026-04-05-update3
docs/timeline-day-95-2026-04-05-update2
docs/ci-incident-runbook-2597
improvement/agent-ca-test-infra-improver-worker-api-mode
docs/shell-safety-api-and-readme-highlights
docs/timeline-day-55-2026-04-04-v2
docs/timeline-day-55-2026-04-04
docs/timeline-day54-update3
improvement/agent-ca-test-infra-improver-fixes
spec/restructure-monolithic-to-split
docs/timeline-day54-update-v2
docs/timeline-day54-update
fix-agents
docs/shell-safety-and-domain-base-model
fix/1452-impl
fix/1473-plan-cancel
fix/1425-test
fix/1426-config
fix/1421-perf
fix/1424-impl
test/int-wf16-devcontainer
feature/m8-tui-persona-export
feature/m7-post-resource-equivalence
test/e2e-m4-acceptance
feature/m6-tantivy-backend
feature/m6-estimation
feature/m6-estimation-report-model
feature/observability-prometheus-audit
feat/server-auth-namespace
feature/m8-session-editing
feature/llm-actor-subplan-wiring
feature/m8-tui-first-run-actor-selection
feature/m8-tui-conversation-block-catalog
feature/m8-tui-settings-screen
feature/m7-e2e-porting
feature/m6-estimation-historical-stats
feature/m8-tui-persona-export-import
feature/m8-tui-sessions-screen
feature/m7-graph-backend
feature/m8-tui-block-context-menu
feature/m8-tui-tool-call-expand
feature/m4-missing-builtin-tools
docs/v3.7.0-release-docs
feature/m8-tui-session-export
test/e2e-wf15-disaster-recovery
test/e2e-wf03-refactoring
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feature/m8-tui-prompt-history
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bugfix/m6-build-hierarchy-child-ids
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test/e2e-wf09-session
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test/int-wf17-explicit-container
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test/int-wf15-disaster-recovery
test/int-wf13-custom-profile
test/int-wf03-refactoring
test/int-wf11-graph-actor
test/int-wf10-batch
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feature/m3-tdd-issue-consistency-gate
feature/m3-invariant-enforcement-strategize
test/int-wf18-container-clone
test/int-wf01-hello-world
feature/m6-diagnostic-dashboard-health-categories
feature/m6-cli-polish
fix/e2e-db-isolation
feature/m7-post-tui
feature/m9-asgi-endpoint
feature/m7-post-server
tdd/m7-audit-session-race
tdd/m3-skill-add-regression
feature/m9-remote-repos
feature/fs-mount-file-types
tdd/container-resolve-crash
test/e2e-m1-acceptance
test/e2e-m2-acceptance
eugen.thaci-patch-3
eugen.thaci-patch-2
eugen.thaci-patch-1
aditya-fix-latest
feature/m4-secret-masking-llm-context
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refactor/m3-replace-mktemp
refactor/m3-remove-unittest-mock-integration
refactor/m3-remove-robot-mock-imports
refactor/m3-remove-mock-llm-integration
docs/improved-menu-adr
feature/m7-post-auth
feature/m3-fix-resource-bootstrap
feature/post-safety-profile-tests
integration/batch-2026-03-02
feat/slipcover
docs/safety-profile-spec-composition
integrate/freemo-batch-1
feature/m4-error-recovery
feature/m4-security-template
feature/m3-validation-pipeline
develop-aditya-2
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feature/m3-validation-apply
feature/m6-acp-stubs
feature/m4-correction-flows
feature/m1-plan-execute-runtime
feature/m4-security-exceptions
feature/m4-definition-of-done
feature/m4-correction-model
feature/m1-apply-pipeline
feature/m5-automation-profiles
feature/m2-lsp-stubs
feature/m3-invariants
feature/m1-actor-runtime
feature/docs-v2-restore
feature/m6-perf-scale
feature/m6-validation-edge
feature/m3-session-cli
feature/m1-persistence-tests-robot
feature/m3-config-cli
feature/m1-cli-tests-robot
feature/m5-subplan-tests
feature/m6-review-playbook
feature/aditya-m3-actor-loader
feature/m3-skill-protocol
feature/m4-automation-legacy-cleanup
feature/m3-change-model
feature/m3-skill-git
feature/m3-skill-registry
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fix/robot-tests
feature/m3-actor-registry
feature/m3-tool-cli
feature/m4-automation-profiles-cli
feature/m2-resource-cli-extensions
feature/m3-actor-loader
feature/m3-tool-domain-robot
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intel_2_demo
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auto/needs-conflict-resolution
auto/needs-implementer
auto/postmortem
auto/ready-to-merge
auto/restart-throttled
auto/revert
auto/sentinel
auto/stale-inactivity
auto/unstable
Blocked
Bounty
$100
Bounty
$1000
Bounty
$10000
Bounty
$20
Bounty
$2000
Bounty
$250
Bounty
$50
Bounty
$500
Bounty
$5000
Bounty
$750
MoSCoW
Could have
MoSCoW
Must have
MoSCoW
Should have
Needs Feedback
Points
1
Points
13
Points
2
Points
21
Points
3
Points
34
Points
5
Points
55
Points
8
Points
88
Priority
Backlog
Priority
CI Blocker
Priority
Critical
Priority
High
Priority
Low
Priority
Medium
Signed-off: Owner
Signed-off: Scrum Master
Signed-off: Tech Lead
Spike
State
Completed
State
Duplicate
State
In Progress
State
In Review
State
Paused
State
Unverified
State
Verified
State
Wont Do
Type
Automation
Type
Bug
Type
Discussion
Type
Documentation
Type
Epic
Type
Feature
Type
Legendary
Type
Refactor
Type
Support
Type
Task
Type
Testing
Milestone
Clear milestone
No items
No milestone
v3.6.0
Projects
Clear projects
No items
No project
Assignees
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freemo
1 participant
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Reference
cleveragents/cleveragents-core#891
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