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`agents resource add fs-directory` should not cause an error. #523

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opened 2026-03-03 01:31:27 +00:00 by brent.edwards · 1 comment

brent.edwards commented

2026-03-03 01:31:27 +00:00

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Commit Message: fix(resource): call bootstrap_builtin_types during initialization
Branch: feature/m3-fix-resource-bootstrap

Background and Context

agents resource add fs-directory local/source --path /home/devuser/python fails with "Resource type not found: fs-directory". The root cause is that bootstrap_builtin_types() in src/cleveragents/application/services/resource_registry_service.py:151 is never called during initialization. The built-in resource types (fs-directory, git-checkout) are defined in _BUILTIN_TYPES (lines 66-124) but never seeded into the database.

The init_command (cli/commands/project.py:176) calls project_service.initialize_project(), which calls unit_of_work.init_database() to create tables — but never bootstraps the built-in resource types into them.

This bug shares the same root cause as #524 (git-checkout also not found). A single fix will resolve both.

Expected Behavior

After agents init, the built-in resource types (fs-directory, git-checkout, and any others in _BUILTIN_TYPES) are seeded into the database and available for agents resource add.

Acceptance Criteria

agents resource add fs-directory local/test --path /tmp/test succeeds after agents init.
bootstrap_builtin_types() is called during the initialization path.
All built-in resource types from _BUILTIN_TYPES are present in the database after init.
All failing tests from #537 now pass.
This fix also resolves #524 (git-checkout type not found).

Definition of Done

This issue is complete when:

All subtasks below are completed and checked off.
A Git commit is created where the first line of the commit message matches the Commit Message in Metadata exactly, followed by a blank line, then additional lines providing relevant details about the implementation.
The commit is pushed to the remote on the branch matching the Branch in Metadata exactly.
The commit is submitted as a pull request to master, reviewed, and merged before this issue is marked done.

Subtasks

Code [freemo]: Add a call to resource_registry_service.bootstrap_builtin_types() in the initialization path (either in init_command, initialize_project(), or as a post-init_database() hook) so that built-in resource types are seeded on first run.
Code [freemo]: Ensure bootstrap_builtin_types() is idempotent — calling it multiple times does not duplicate types.
Code [freemo]: Verify that both fs-directory and git-checkout (and any other _BUILTIN_TYPES) are present in the database after initialization.
Docs [freemo]: Add a comment in the initialization code explaining that built-in types must be bootstrapped after schema creation.
Tests (Behave) [freemo]: Verify that all Behave scenarios from #537 now pass with the fix applied.
Tests (Robot) [freemo]: Verify the Robot smoke test from #537 passes.
Tests (ASV) [freemo]: Verify the ASV benchmark from #537 runs correctly.
Quality [freemo]: Verify coverage >=97% via nox -s coverage_report. If coverage is <97% then review the current unit test coverage report at build/coverage.xml and use it to write new Behave based unit tests to improve code coverage. Specifically, write Behave style unit tests that are descriptively named and specifically improve coverage on whichever file has the most uncovered lines by writing tests that will target the uncovered lines in the report. Once that is done rerun nox -s coverage_report to verify all tests pass and coverage is above >=97%. Only mark this as complete once coverage is >=97%, if not repeat this task as many times as is needed until coverage reaches >=97%.
Quality [freemo]: Run nox (all default sessions, including benchmark), fix any errors if needed ensuring nox passes across entire code base, do not ignore any failure even if it seems unrelated to this commit, fix it.

Parent: #401
Blocked by: #537

## Metadata - **Commit Message**: `fix(resource): call bootstrap_builtin_types during initialization` - **Branch**: `feature/m3-fix-resource-bootstrap` ## Background and Context `agents resource add fs-directory local/source --path /home/devuser/python` fails with "Resource type not found: fs-directory". The root cause is that `bootstrap_builtin_types()` in `src/cleveragents/application/services/resource_registry_service.py:151` is never called during initialization. The built-in resource types (`fs-directory`, `git-checkout`) are defined in `_BUILTIN_TYPES` (lines 66-124) but never seeded into the database. The `init_command` (`cli/commands/project.py:176`) calls `project_service.initialize_project()`, which calls `unit_of_work.init_database()` to create tables — but never bootstraps the built-in resource types into them. This bug shares the same root cause as #524 (`git-checkout` also not found). A single fix will resolve both. ## Expected Behavior After `agents init`, the built-in resource types (`fs-directory`, `git-checkout`, and any others in `_BUILTIN_TYPES`) are seeded into the database and available for `agents resource add`. ## Acceptance Criteria - [ ] `agents resource add fs-directory local/test --path /tmp/test` succeeds after `agents init`. - [ ] `bootstrap_builtin_types()` is called during the initialization path. - [ ] All built-in resource types from `_BUILTIN_TYPES` are present in the database after init. - [ ] All failing tests from #537 now pass. - [ ] This fix also resolves #524 (git-checkout type not found). ## Definition of Done This issue is complete when: - All subtasks below are completed and checked off. - A Git commit is created where the **first line** of the commit message matches the Commit Message in Metadata exactly, followed by a blank line, then additional lines providing relevant details about the implementation. - The commit is pushed to the remote on the branch matching the **Branch** in Metadata exactly. - The commit is submitted as a **pull request** to `master`, reviewed, and **merged** before this issue is marked done. ## Subtasks - [ ] Code [freemo]: Add a call to `resource_registry_service.bootstrap_builtin_types()` in the initialization path (either in `init_command`, `initialize_project()`, or as a post-`init_database()` hook) so that built-in resource types are seeded on first run. - [ ] Code [freemo]: Ensure `bootstrap_builtin_types()` is idempotent — calling it multiple times does not duplicate types. - [ ] Code [freemo]: Verify that both `fs-directory` and `git-checkout` (and any other `_BUILTIN_TYPES`) are present in the database after initialization. - [ ] Docs [freemo]: Add a comment in the initialization code explaining that built-in types must be bootstrapped after schema creation. - [ ] Tests (Behave) [freemo]: Verify that all Behave scenarios from #537 now pass with the fix applied. - [ ] Tests (Robot) [freemo]: Verify the Robot smoke test from #537 passes. - [ ] Tests (ASV) [freemo]: Verify the ASV benchmark from #537 runs correctly. - [ ] Quality [freemo]: Verify coverage >=97% via `nox -s coverage_report`. If coverage is <97% then review the current unit test coverage report at `build/coverage.xml` and use it to write new Behave based unit tests to improve code coverage. Specifically, write Behave style unit tests that are descriptively named and specifically improve coverage on whichever file has the most uncovered lines by writing tests that will target the uncovered lines in the report. Once that is done rerun `nox -s coverage_report` to verify all tests pass and coverage is above >=97%. Only mark this as complete once coverage is >=97%, if not repeat this task as many times as is needed until coverage reaches >=97%. - [ ] Quality [freemo]: Run `nox` (all default sessions, including benchmark), fix any errors if needed ensuring nox passes across **entire** code base, do not ignore any failure even if it seems unrelated to this commit, fix it. Parent: #401 Blocked by: #537

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test(resource): add failing tests for built-in fs-directory type bootstrap (#523) #537

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agents resource add git-checkout should not cause an error. #524

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test(resource): add failing tests for built-in fs-directory type bootstrap (#537) #567

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test(resource): add failing tests for built-in fs-directory type bootstrap (#523) #537

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test(resource): add failing tests for built-in fs-directory type bootstrap (#537) #567

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test(resource): add failing tests for built-in fs-directory type bootstrap (#537) #567

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test(resource): add failing tests for built-in fs-directory type bootstrap (#537) #567

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#567 test(resource): add failing tests for built-in fs-directory type bootstrap (#537)

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test(e2e): validate M3 acceptance criteria for v3.2.0 milestone closure #494

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test(resource): add failing tests for built-in fs-directory type bootstrap (#537) #567

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Implementation Summary

Root cause: bootstrap_builtin_types() in ResourceRegistryService was never called during project initialization, so built-in resource types (including fs-directory) were not seeded into the database.

Fix: Added a call to bootstrap_builtin_types() in init_command() in src/cleveragents/cli/commands/project.py (after project_service.initialize_project() returns). The call is idempotent and placed after initialize_project() because the database tables are created there via unit_of_work.init_database().

Additional fixes in the same commit:

Fixed the TDD robot test (resource_type_bootstrap_git.robot) to properly initialize a project before running resource add, since the CLI command requires an initialized project with a database.
Fixed a pre-existing parallel test failure in plan_commands_new_coverage.feature:78 where unittest.mock.patch couldn't reliably intercept PlanApplyService under behave-parallel's fork()-based workers. The fix patches PlanApplyService at both the canonical source module and the plan module (with create=True).

Verification: All nox stages pass — lint, typecheck, unit_tests (8940 scenarios, 0 failures), integration_tests (1286 tests, 0 failures), coverage_report (97%).

## Implementation Summary **Root cause:** `bootstrap_builtin_types()` in `ResourceRegistryService` was never called during project initialization, so built-in resource types (including `fs-directory`) were not seeded into the database. **Fix:** Added a call to `bootstrap_builtin_types()` in `init_command()` in `src/cleveragents/cli/commands/project.py` (after `project_service.initialize_project()` returns). The call is idempotent and placed after `initialize_project()` because the database tables are created there via `unit_of_work.init_database()`. **Additional fixes in the same commit:** - Fixed the TDD robot test (`resource_type_bootstrap_git.robot`) to properly initialize a project before running `resource add`, since the CLI command requires an initialized project with a database. - Fixed a pre-existing parallel test failure in `plan_commands_new_coverage.feature:78` where `unittest.mock.patch` couldn't reliably intercept `PlanApplyService` under `behave-parallel`'s `fork()`-based workers. The fix patches `PlanApplyService` at both the canonical source module and the plan module (with `create=True`). **Verification:** All nox stages pass — lint, typecheck, unit_tests (8940 scenarios, 0 failures), integration_tests (1286 tests, 0 failures), coverage_report (97%).

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Detected master commit violating the strict merge invariant. Tracked as an issue (not a PR label); kept here for label completeness.

auto/last-attempt-tier-0

In-cycle escalation: most recent attempt ran at the Tier 0 slot (`tier-0`). Slot's model defined in .opencode/models/tiers.yaml.

auto/last-attempt-tier-1

In-cycle escalation: most recent attempt ran at the Tier 1 slot (`tier-1`). Slot's model defined in .opencode/models/tiers.yaml.

auto/last-attempt-tier-2

In-cycle escalation: most recent attempt ran at the Tier 2 slot (`tier-2`). Slot's model defined in .opencode/models/tiers.yaml. Gated behind IMPLEMENTER_ESCALATION_TIER2_ENABLED.

auto/last-attempt-tier-min

In-cycle escalation: most recent attempt ran at the Tier -1 slot (`tier-min`). Slot's model defined in .opencode/models/tiers.yaml. Suffix is ``-min`` (not ``--1``) so the Forgejo UI reads naturally.

Automation Tracking

Tracking issues used by the AI Automation system for agents to communicate and report.

auto/needs-conflict-resolution

Rebase conflict needs LLM conflict-resolver.

auto/needs-implementer

Failing CI needs implementer attention.

auto/postmortem

Documenting a driver incident or rollback.

auto/ready-to-merge

Reviewer has APPROVED this PR and no later REQUEST_CHANGES is outstanding. The merge driver requires this label to even consider a PR for merging. Set by the reviewer worker on APPROVE; cleared on REQUEST_CHANGES.

auto/restart-throttled

Train repeatedly lost master-tempo races. Driver excludes via merge_cycle until cooldown elapses; label persists as visible history.

auto/revert

Revert PR backing out an invariant violation. Fast-tracked through the merge driver.

auto/sentinel

Sentinel PR duplicated from upstream into a personal fork by tools/duplicate_prs_to_fork.py for pipeline testing. Lives only in the fork; the canonical pipeline never sees it.

auto/stale-inactivity

No implementer activity for N days. Flagged for human review. Auto-cleared on next push to head branch.

auto/unstable

Repeatedly fails on current master (>= 3 ci-fail-on-rebased-sha releases in 12 h). Excluded from driver until human triage.

Blocked

A ticket in a blocked state and unable to complete until some other task is completed first.

Bounty

$100

A bounty of $100 for any open-source contributor who provides a MR that solves this issue

Bounty

$1000

A bounty of $1000 for any open-source contributor who provides a MR that solves this issue

Bounty

$10000

A bounty of $10000 for any open-source contributor who provides a MR that solves this issue

Bounty

$20

A bounty of $20 for any open-source contributor who provides a MR that solves this issue

Bounty

$2000

A bounty of $2000 for any open-source contributor who provides a MR that solves this issue

Bounty

$250

A bounty of $250 for any open-source contributor who provides a MR that solves this issue

Bounty

$50

A bounty of $50 for any open-source contributor who provides a MR that solves this issue

Bounty

$500

A bounty of $500 for any open-source contributor who provides a MR that solves this issue

Bounty

$5000

A bounty of $5000 for any open-source contributor who provides a MR that solves this issue

Bounty

$750

A bounty of $750 for any open-source contributor who provides a MR that solves this issue

MoSCoW

Could have

Could have feature in order to satisfy the epic/legendary.

MoSCoW

Must have

Must have feature in order to satisfy the epic/legendary.

MoSCoW

Should have

Should have feature in order to satisfy the epic/legendary.

Needs Feedback

There are questions in the ticket that can not be completed until the project owner provides clarity.

Points

1 man-hours worth of work for an expert with no learning curve.

Points

13 man-hours worth of work for an expert with no learning curve.

Points

2 man-hours worth of work for an expert with no learning curve.

Points

21 man-hours worth of work for an expert with no learning curve.

Points

3 man-hours worth of work for an expert with no learning curve.

Points

34 man-hours worth of work for an expert with no learning curve.

Points

5 man-hours worth of work for an expert with no learning curve.

Points

55 man-hours worth of work for an expert with no learning curve.

Points

8 man-hours worth of work for an expert with no learning curve.

Points

88 man-hours worth of work for an expert with no learning curve.

Priority

Backlog

This ticket has backlogged priority and is not to be worked on yet

Priority

CI Blocker

Critical priority issue that blocks CI/CD pipeline and prevents PR merges

Priority

Critical

The priority is critical

The priority is medium

Signed-off: Owner

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

Signed-off: Scrum Master

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

Signed-off: Tech Lead

When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

Spike

A ticket for learning a tool or technology that is needed to be able to do future planning and design.

State

Completed

The ticket has been fully implemented, completed, and merged with the source code. This label should only be applied once a ticket is closed.

State

Duplicate

A ticket that represents the same content as an existing ticket.

State

In Progress

A ticket that is actively being developed.

State

In Review

A ticket that has had some code completed to implement but is waiting to pass peer review and is not yet merged in.

State

Paused

This ticket's work started but wasn't finished. It's on hold (likely in a feature branch) and will be resumed later, either due to a blocker or a delay.

State

Unverified

All new tickets start in this state. A developer may set it to show the ticket is unverified. This means we haven't agreed to work on it. It will either move to a verified state or be closed as wontdo.

State

Verified

The issue has been verified by a developer as legitimate. It will be worked on and verified tickets are now considered part of the backlog.

State

Wont Do

This ticket has been decided it wont be done. This may mean the bug has been determined to not be real (cant verify) or the feature is one we have decided we dont want to adopt.

Type

Automation

Any edits or discussion about the AI automated coding system.

Type

Bug

Something that doesnt work as intended.

Type

Discussion

Anytime a ticket represents a discussion about a subject and doesnt fall into one of the other categories.

Type

Documentation

An error or improvement needed in the documentation.

Type

Epic

Any first tier epic. That is, an epic which contains only issues as children and will not have sub-epics.

Type

Feature

Some new functionality not present.

Type

Legendary

A type of Epic which will contain other Epics.

Type

Refactor

A code change that restructures existing code without changing its external behavior.

Type

Support

Someone needs help using the project.

Type

Task

A generic task that doesnt fit into the other type categories.

Type

Testing

Work exclusively focusing on fixing or expanding testing.

No labels

auto/needs-reevaluation

controller-managed

auto/blocked-by-deps

auto/ci-timeout

auto/claimed-implementer

auto/claimed-merge

auto/claimed-reviewer

auto/driver-down

auto/invariant-violation

auto/last-attempt-tier-0

auto/last-attempt-tier-1

auto/last-attempt-tier-2

auto/last-attempt-tier-min

Automation Tracking

auto/needs-conflict-resolution

auto/needs-implementer

auto/postmortem

auto/ready-to-merge

auto/restart-throttled

auto/revert

auto/sentinel

auto/stale-inactivity

Signed-off: Scrum Master

Signed-off: Tech Lead

Milestone

Clear milestone

No items

No milestone

v3.2.0

Projects

Clear projects

No items

No project

Assignees

Clear assignees

No assignees

freemo

2 participants

Notifications

Due date

The due date is invalid or out of range. Please use the format "yyyy-mm-dd".

No due date set.

Depends on

#567 test(resource): add failing tests for built-in fs-directory type bootstrap (#537)

cleveragents/cleveragents-core

#626 fix(resource): call bootstrap_builtin_types during initialization

cleveragents/cleveragents-core

Reference

cleveragents/cleveragents-core#523

Reference in a new issue

Repository

cleveragents/cleveragents-core

Title

Body

No description provided.

Delete branch "%!s()"

Deleting a branch is permanent. Although the deleted branch may continue to exist for a short time before it actually gets removed, it CANNOT be undone in most cases. Continue?

Rows
Columns

agents resource add fs-directory should not cause an error. #523

Metadata

Background and Context

Expected Behavior

Acceptance Criteria

Definition of Done

Subtasks

Implementation Summary

`agents resource add fs-directory` should not cause an error. #523