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TEST-INFRA: [dependency-security] Perform a comprehensive dependency security audit #3621

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opened 2026-04-05 20:53:27 +00:00 by freemo · 0 comments

freemo commented

2026-04-05 20:53:27 +00:00

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Branch: task/dependency-security-audit
Commit Message: chore(security): perform comprehensive dependency security audit and integrate scanner into CI
Milestone: Backlog
Parent Epic: #362

Description

A brief manual review of the project's dependencies has revealed that a comprehensive security audit is necessary. Due to limitations in the current environment, it is not possible to perform a full scan for vulnerabilities.

Current Situation

A manual review of pyproject.toml and uv.lock was performed.
The exact version of some dependencies, like jinja2, could not be determined from the available information.
While some dependencies like aiohttp appear to be up-to-date with respect to known CVEs, a full audit is required to ensure all dependencies are secure.

Subtasks

Configure and run a security scanner (e.g., uv pip audit, snyk, or trivy) in the CI pipeline.
Review and update all dependencies to their latest secure versions.
Investigate and address any reported vulnerabilities.
Add a nox -s security session (or equivalent) that runs the dependency scanner.
Tests (Behave): Add scenarios validating the CI security gate is present and configured.
Run nox (all default sessions), fix any errors.
Verify coverage >= 97% via nox -s coverage_report.

Definition of Done

All subtasks above are completed and checked off.
A security scanner is integrated into the CI pipeline.
All high and critical vulnerabilities are addressed.
A plan is in place to regularly review and update dependencies.
A Git commit is created where the first line of the commit message matches the Commit Message in Metadata exactly.
The commit is pushed to the remote on the branch matching the Branch in Metadata exactly.
The commit is submitted as a pull request, reviewed, and merged.
All nox stages pass.
Coverage >= 97%.

Backlog note: This issue was discovered during autonomous operation
on milestone v3.6.0. It does not block milestone completion and has been
placed in the backlog for human review and future milestone assignment.

Automated by CleverAgents Bot
Supervisor: Test Infrastructure | Agent: ca-new-issue-creator

## Metadata - **Branch**: `task/dependency-security-audit` - **Commit Message**: `chore(security): perform comprehensive dependency security audit and integrate scanner into CI` - **Milestone**: Backlog - **Parent Epic**: #362 **Description** A brief manual review of the project's dependencies has revealed that a comprehensive security audit is necessary. Due to limitations in the current environment, it is not possible to perform a full scan for vulnerabilities. **Current Situation** - A manual review of `pyproject.toml` and `uv.lock` was performed. - The exact version of some dependencies, like `jinja2`, could not be determined from the available information. - While some dependencies like `aiohttp` appear to be up-to-date with respect to known CVEs, a full audit is required to ensure all dependencies are secure. ## Subtasks - [ ] Configure and run a security scanner (e.g., `uv pip audit`, `snyk`, or `trivy`) in the CI pipeline. - [ ] Review and update all dependencies to their latest secure versions. - [ ] Investigate and address any reported vulnerabilities. - [ ] Add a `nox -s security` session (or equivalent) that runs the dependency scanner. - [ ] Tests (Behave): Add scenarios validating the CI security gate is present and configured. - [ ] Run `nox` (all default sessions), fix any errors. - [ ] Verify coverage >= 97% via `nox -s coverage_report`. ## Definition of Done - [ ] All subtasks above are completed and checked off. - [ ] A security scanner is integrated into the CI pipeline. - [ ] All high and critical vulnerabilities are addressed. - [ ] A plan is in place to regularly review and update dependencies. - [ ] A Git commit is created where the **first line** of the commit message matches the Commit Message in Metadata exactly. - [ ] The commit is pushed to the remote on the branch matching the **Branch** in Metadata exactly. - [ ] The commit is submitted as a **pull request**, reviewed, and **merged**. - [ ] All nox stages pass. - [ ] Coverage >= 97%. > **Backlog note:** This issue was discovered during autonomous operation > on milestone v3.6.0. It does not block milestone completion and has been > placed in the backlog for human review and future milestone assignment. --- **Automated by CleverAgents Bot** Supervisor: Test Infrastructure | Agent: ca-new-issue-creator

freemo added a new dependency

2026-04-05 20:53:42 +00:00

#362 Epic: Security & Safety Hardening

freemo added this to the v3.7.0 milestone

2026-04-05 20:54:50 +00:00

freemo referenced this issue

2026-04-05 20:55:21 +00:00

[Automated] CleverAgents Build Session - 2026-04-05 #3572

HAL9000 referenced this issue

2026-04-15 23:33:31 +00:00

[AUTO-INF-8] Harden dependency security posture for cleveragents-core #9889

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auto-docs-1-changelog-expansion

spec/invariant-management-system-v3.2.0

pr-8289

spec/plan-correction-engine-v3.2.0

spec/layered-architecture-boundary-policy

spec/tui-materializer-a2a-integration-v3.7.0

spec/decision-recording-system-v3.2.0

docs/auto-docs-1-milestone-overview

pr-7484

pr-4212

auto-arch-3/v3.8.0-milestone-plan

auto-docs-6/troubleshooting-and-config

auto-time-1-day103-session5

auto-docs-5/contributor-guide-and-readme

docs/plan-tree-ulid-examples

docs/m3-spec-clarify-path-datetime-plugin-contracts

docs/auto-docs-cycle-10-diagnostics-ref

auto-docs-3/user-guide-and-architecture

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auto-docs-1/release-notes-v3.0-v3.1

spec/update-validation-attach-project-delete

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docs/auto-docs-cycle-13-updates

docs/timeline-day-102-auto-time

timeline/day-103-2026-04-13

spec/arch-invariant-cli-completeness

spec/update-cycle1-validation-attach-project-delete

docs/add-session-management-showcase

spec/arch-sandbox-path-correction-cycle9

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docs/auto-docs-cycle-12-updates

docs/cycle-1-validation-gate-fix

docs/2026-04-08-unreleased-changelog

docs/auto-docs-cycle-2-2026-04-10

docs/session-4615-2026-04-08-cycle1

feat/issue-6361-shell-safety-service-tui

spec/architecture-cycle-25-new-features

fix/issue-6345-automation-profile-add-output

docs/timeline-day-102-2026-04-12

docs/cycle-2-git-worktree-acms-hydrator

spec/arch-sandbox-cleanup-discovery

docs/timeline-day96-2026-04-08

docs/auto-docs-cycle-11

spec/fix-sandbox-strategy-protocol-name

spec/arch-acms-tier-hydration

fix/v3.4.0/context-settings-defaults

docs/add-example-repl-and-actor-run

docs/auto-docs-cycle-10-updates

docs/session-4-2026-04-08-updates

docs/showcase-all-examples-consolidated

docs/timeline-day-97

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timeline/day-101-2026-04-11

docs/timeline-day99-2026-04-09-v2

docs/auto-docs-cycle-2-worktree-acms

spec/architecture-v3.8.0-milestone-plan

docs/api-lsp-acms-reference

improvement/agent-bug-hunt-pool-supervisor-yaml-syntax-fix

spec/project-delete-deleted-at-field

spec/architecture-provider-registry-tui-materializer

spec/document-reconciliation-blocked-error-5942

fix/issue-7482-git-log-injection

spec/devcontainer-auto-discovery-schema

feat/issue-6350-conversation-content-pruning

docs/update-module-guides-2026-04-10

timeline/day-100-2026-04-10-auto-time-cycle1

timeline/day-99-2026-04-09-auto-time-v2

docs/cycle-3-module-guides

timeline/day-99-2026-04-09-auto-time

pr-4226

spec/additional-llm-providers-gemini-groq-cohere-together-ollama-mistral

spec/document-context-tier-hydrator-6175

docs/timeline-day99-2026-04-09

spec/invariant-cli-clarifications

docs/add-example-project-init-and-context-management

spec/reconciliation-blocked-error-documentation

spec/fix-invariant-precedence-reference-5861

spec/fix-plan-correct-accepts-plan-id-5558

spec/fix-validation-attach-synopsis-5328

docs/timeline-day-99-cycle-1

docs/timeline-day-99-cycle-2

fix/actor-context-list-regex-arg

docs/timeline-day-99-cycle-3

spec/arch-security-mode-init

docs/auto-docs-cycle-9-updates

fix-resource-fix-resource-remove-to-check-correct-edge-table

feat/issue-6434-tui-env-var-expansion

fix/issue-6321-plan-prompt-timing-field

fix/issue-6322-resource-add-url-flag

feat/issue-6348-sessions-screen

spec/plan-show-command

temp

feat/harden-label-restrictions-1775753628

spec/invariant-reconciliation-failure-behavior

spec/add-reconciliation-failure-behavior-5942

spec/architecture-corrections-cycle3

spec/checkpoint-trigger-names-and-config-key-fix

spec/fix-ai-provider-interface-5801

spec/azure-api-version-default-update

docs/auto-docs-writer-cycle1-labels

spec/fix-resource-type-yaml-format-5622

spec/add-plan-revert-resume-commands-5574

docs/auto-docs-cycle-1-2026-04-09

spec/plan-correct-plan-id-or-decision-id-5558

spec/fix-subgraph-node-actor-ref-field-5427

issue/5284-master-ci-fix

timeline/day-99-2026-04-09-v2

merge-me

docs/session-3377-initial-docs-update

fix/llm-provider-subpackage-exports

spec/arce-acronym-and-tui-keybinding-fixes

spec/architecture-corrections-cycle2

spec/architecture-corrections-cycle1

docs/cycle-1-updates

spec/tui-clarifications-session-export-persona

docs/session-4940-2026-04-08-cycle1

spec/architecture-milestone-plan-v3.2-v3.7

docs/session-4743-2026-04-08-cycle1

docs/timeline-day-98

fix/plan-lifecycle-service-rollback-method

docs/timeline-day98-2026-04-08-v2

docs/add-example-action-and-plan-management

docs/session-2026-04-06-updates

docs/ca-docs-writer-v3.8.1-2026-04-05

fix/session-tell-stub-missing-panels-and-actor-execution

improvement/agent-arch-guard-clone-failure-handling

improvement/agent-test-infra-health-spam-fix-v2

fix-tdd-invert-non-assertion-exceptions

improvement/agent-arch-guard-clone-failure

bugfix/3472-fix-tdd-inversion-logic

bugfix/989-fix-persistence-json-decode-error

improvement/agent-supervisor-tracking-labels-v2

docs/timeline-day95-v2

docs/timeline-day95-final

docs/update-lsp-api-and-changelog

fix/lsp-resource-handler-module-missing

docs/timeline-day95-final-2026-04-05

fix/a2a-plan-correct-rollback-wiring

docs/add-lsp-api-and-changelog-2026-04-05

fix/tool-registry-validation-type-discriminator

docs/v3.7.0-documentation-update

docs/ca-docs-writer-2026-04-05-cycle2

fix/invariant-set-merge-action-scope

docs/unreleased-feature-docs

fix/concurrency-cost-tracker-record-usage-race-condition

improvement/agent-ca-test-infra-improver-failure-handling

docs/update-changelog-mcp-plan-ci-2026-04-05

improvement/agent-pr-reviewer-milestone-prioritization

docs/timeline-day95-refresh-2026-04-05

improvement/agent-mandatory-labels-tracking-issues

docs/api-domain-providers-changelog-2026-04-05

docs/ca-docs-writer-2026-04-05

docs/timeline-day95-refresh

fix/skill-add-include-validation

docs/timeline-day-95-2026-04-05-update3

docs/timeline-day-95-2026-04-05-update2

docs/ci-incident-runbook-2597

improvement/agent-ca-test-infra-improver-worker-api-mode

docs/shell-safety-api-and-readme-highlights

docs/timeline-day-55-2026-04-04-v2

docs/timeline-day-55-2026-04-04

docs/timeline-day54-update3

improvement/agent-ca-test-infra-improver-fixes

spec/restructure-monolithic-to-split

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docs/shell-safety-and-domain-base-model

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fix/1473-plan-cancel

fix/1425-test

fix/1426-config

fix/1421-perf

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test/int-wf16-devcontainer

feature/m8-tui-persona-export

feature/m7-post-resource-equivalence

test/e2e-m4-acceptance

feature/m6-tantivy-backend

feature/m6-estimation

feature/m6-estimation-report-model

feature/observability-prometheus-audit

feat/server-auth-namespace

feature/m8-session-editing

feature/llm-actor-subplan-wiring

feature/m8-tui-first-run-actor-selection

feature/m8-tui-conversation-block-catalog

feature/m8-tui-settings-screen

feature/m7-e2e-porting

feature/m6-estimation-historical-stats

feature/m8-tui-persona-export-import

feature/m8-tui-sessions-screen

feature/m7-graph-backend

feature/m8-tui-block-context-menu

feature/m8-tui-tool-call-expand

feature/m4-missing-builtin-tools

docs/v3.7.0-release-docs

feature/m8-tui-session-export

test/e2e-wf15-disaster-recovery

test/e2e-wf03-refactoring

test/e2e-m3-acceptance

feature/m8-tui-prompt-history

feature/m8-tui-actor-thought-block-rendering

bugfix/m6-build-hierarchy-child-ids

feature/resource-inheritance-wiring

test/e2e-wf09-session

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test/e2e-wf08-cloud-infra

test/e2e-wf02-test-generation

test/e2e-wf13-custom-profile

test/e2e-wf11-graph-actor

test/e2e-wf01-hello-world

test/int-wf17-explicit-container

test/int-wf12-hierarchical

test/int-wf15-disaster-recovery

test/int-wf13-custom-profile

test/int-wf03-refactoring

test/int-wf11-graph-actor

test/int-wf10-batch

test/int-wf09-session

feature/m3-tdd-issue-consistency-gate

feature/m3-invariant-enforcement-strategize

test/int-wf18-container-clone

test/int-wf01-hello-world

feature/m6-diagnostic-dashboard-health-categories

feature/m6-cli-polish

fix/e2e-db-isolation

feature/m7-post-tui

feature/m9-asgi-endpoint

feature/m7-post-server

tdd/m7-audit-session-race

tdd/m3-skill-add-regression

feature/m9-remote-repos

feature/fs-mount-file-types

tdd/container-resolve-crash

test/e2e-m1-acceptance

test/e2e-m2-acceptance

eugen.thaci-patch-3

eugen.thaci-patch-2

eugen.thaci-patch-1

aditya-fix-latest

feature/m4-secret-masking-llm-context

aditya-fix

refactor/m3-replace-mktemp

refactor/m3-remove-unittest-mock-integration

refactor/m3-remove-robot-mock-imports

refactor/m3-remove-mock-llm-integration

docs/improved-menu-adr

feature/m7-post-auth

feature/m3-fix-resource-bootstrap

feature/post-safety-profile-tests

integration/batch-2026-03-02

feat/slipcover

docs/safety-profile-spec-composition

integrate/freemo-batch-1

feature/m4-error-recovery

feature/m4-security-template

feature/m3-validation-pipeline

develop-aditya-2

feature/m3-diff-review

feature/m3-validation-apply

feature/m6-acp-stubs

feature/m4-correction-flows

feature/m1-plan-execute-runtime

feature/m4-security-exceptions

feature/m4-definition-of-done

feature/m4-correction-model

feature/m1-apply-pipeline

feature/m5-automation-profiles

feature/m2-lsp-stubs

feature/m3-invariants

feature/m1-actor-runtime

feature/docs-v2-restore

feature/m6-perf-scale

feature/m6-validation-edge

feature/m3-session-cli

feature/m1-persistence-tests-robot

feature/m3-config-cli

feature/m1-cli-tests-robot

feature/m5-subplan-tests

feature/m6-review-playbook

feature/aditya-m3-actor-loader

feature/m3-skill-protocol

feature/m4-automation-legacy-cleanup

feature/m3-change-model

feature/m3-skill-git

feature/m3-skill-registry

feature/m4-security-eval

fix/robot-tests

feature/m3-actor-registry

feature/m3-tool-cli

feature/m4-automation-profiles-cli

feature/m2-resource-cli-extensions

feature/m3-actor-loader

feature/m3-tool-domain-robot

feature/m3-skill-domain-robot

feature/m3-skill-cli

feature/m1-resource-db-robot-tests

feature/m3-session-domain-robot

feature/m1-persistence-tests

feature/m1-cli-tests

ten-branches-backup

feature/m3-skill-schema

feature/m3-session-persistence

feature/automation-profiles-and-resource-dag

feature/m1-plan-repo

feature/m1-db-plan-phase-rebaseline

feat/B4-sandbox

feat/B2-cli-wiring

feat/B5-project-persistence

feat/B1-project-data-models

feat/b1-data-models

feat-repo-manager-and-sourcegraph-support

feat/actor-schema

fix/component-isolation-security-fix

feat/ontology-agent

fix/error-handling-security-fix

fix/concurrency-security-fix

fix/serialization-security-fix

fix/server-side-request-forgery-security-fix

fix/file-system-security

fix/template-injection-fix

fix/data-injection-fix

tests/unit-tests

latest/poetry-generator

poetry-generator

config/contract-metadata-extractor

docs/readme-yaml-syntax

config/memory-yaml

fix/double-response

brent-additions

intel_2_demo

auto-working-v6

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