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UAT: agents resource remove checks ResourceEdgeModel (resource_edges table) for edges but DAG links are stored in ResourceLinkModel (resource_links table) — dangling links after removal #2837

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opened 2026-04-04 20:46:20 +00:00 by freemo · 1 comment
freemo commented 2026-04-04 20:46:20 +00:00
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Background

The resource_remove CLI command in src/cleveragents/cli/commands/resource.py (around line 1290) checks for existing DAG edges using ResourceEdgeModel (which queries the resource_edges table) before allowing deletion. However, the link_child / unlink_child operations in _resource_registry_dag.py store DAG relationships in ResourceLinkModel (which queries the resource_links table).

This means:

  1. User calls agents resource link-child parent child → link stored in resource_links table via ResourceLinkModel
  2. User calls agents resource remove child → CLI checks resource_edges table via ResourceEdgeModel → finds 0 edges → allows deletion
  3. The resource_links table now has a dangling reference to the deleted resource's ID

Expected behavior: agents resource remove should check BOTH ResourceEdgeModel (resource_edges) AND ResourceLinkModel (resource_links) for existing DAG relationships before allowing deletion. If any links exist in either table, the removal should be rejected with a clear error message.

Actual behavior: agents resource remove only checks ResourceEdgeModel (resource_edges table). Links created via agents resource link-child (stored in resource_links table via ResourceLinkModel) are NOT checked. This allows deletion of resources that still have active DAG parent/child relationships, leaving dangling foreign key references in the resource_links table.

Severity: High — data integrity violation; DAG consistency is broken silently.

Steps to Reproduce

  1. agents resource add git-checkout local/parent-repo --path /tmp/parent
  2. agents resource add fs-directory local/child-dir --path /tmp/child
  3. agents resource link-child local/parent-repo local/child-dir → stored in resource_links
  4. agents resource remove local/child-dir → succeeds (should fail!)
  5. Check resource_links table → dangling row with child_id pointing to deleted resource

Code Locations

  • src/cleveragents/cli/commands/resource.py ~line 1290: checks ResourceEdgeModel only
  • src/cleveragents/application/services/_resource_registry_dag.py lines 104, 138, 173, 210, 266: uses ResourceLinkModel for all DAG operations
  • src/cleveragents/infrastructure/database/models.py: defines both ResourceEdgeModel (table: resource_edges) and ResourceLinkModel (table: resource_links) as separate models

Metadata

  • Branch: fix/resource-remove-check-resource-links
  • Commit Message: fix(cli): check ResourceLinkModel in resource remove to prevent dangling DAG links
  • Milestone: v3.7.0
  • Parent Epic: #398

Subtasks

  • Audit resource_remove in src/cleveragents/cli/commands/resource.py (~line 1290) to understand the current edge-check logic using ResourceEdgeModel
  • Add a pre-deletion guard that queries ResourceLinkModel for any rows where parent_id OR child_id matches the resource being removed
  • Ensure the combined check (both ResourceEdgeModel and ResourceLinkModel) raises a clear, user-facing error message listing the conflicting links if any are found
  • Write Behave unit tests (in features/) covering: removal blocked when resource_links row exists as parent, removal blocked when resource_links row exists as child, removal succeeds when neither table has references
  • Write Robot Framework integration tests (in robot/) reproducing the exact steps-to-reproduce scenario end-to-end
  • Run nox -e typecheck and confirm no Pyright errors introduced
  • Run nox -e lint and confirm no linting violations
  • Run nox -e unit_tests and confirm all Behave scenarios pass
  • Run nox -e integration_tests and confirm Robot Framework tests pass
  • Run nox -e coverage_report and confirm coverage remains ≥ 97%

Definition of Done

  • All subtasks above are checked off
  • agents resource remove rejects deletion of any resource that has active entries in either resource_edges OR resource_links tables, with a descriptive error message
  • No dangling rows are left in resource_links after any resource remove operation
  • Commit created with exact message: fix(cli): check ResourceLinkModel in resource remove to prevent dangling DAG links with footer ISSUES CLOSED: #<this issue number>
  • Commit pushed to branch fix/resource-remove-check-resource-links
  • Pull Request opened, linked to this issue, and merged
  • All nox stages pass
  • Coverage >= 97%

Automated by CleverAgents Bot
Supervisor: UAT Testing | Agent: ca-uat-tester

## Background The `resource_remove` CLI command in `src/cleveragents/cli/commands/resource.py` (around line 1290) checks for existing DAG edges using `ResourceEdgeModel` (which queries the `resource_edges` table) before allowing deletion. However, the `link_child` / `unlink_child` operations in `_resource_registry_dag.py` store DAG relationships in `ResourceLinkModel` (which queries the `resource_links` table). This means: 1. User calls `agents resource link-child parent child` → link stored in `resource_links` table via `ResourceLinkModel` 2. User calls `agents resource remove child` → CLI checks `resource_edges` table via `ResourceEdgeModel` → finds 0 edges → allows deletion 3. The `resource_links` table now has a dangling reference to the deleted resource's ID **Expected behavior**: `agents resource remove` should check BOTH `ResourceEdgeModel` (resource_edges) AND `ResourceLinkModel` (resource_links) for existing DAG relationships before allowing deletion. If any links exist in either table, the removal should be rejected with a clear error message. **Actual behavior**: `agents resource remove` only checks `ResourceEdgeModel` (resource_edges table). Links created via `agents resource link-child` (stored in `resource_links` table via `ResourceLinkModel`) are NOT checked. This allows deletion of resources that still have active DAG parent/child relationships, leaving dangling foreign key references in the `resource_links` table. **Severity**: High — data integrity violation; DAG consistency is broken silently. ## Steps to Reproduce 1. `agents resource add git-checkout local/parent-repo --path /tmp/parent` 2. `agents resource add fs-directory local/child-dir --path /tmp/child` 3. `agents resource link-child local/parent-repo local/child-dir` → stored in `resource_links` 4. `agents resource remove local/child-dir` → succeeds (should fail!) 5. Check `resource_links` table → dangling row with `child_id` pointing to deleted resource ## Code Locations - `src/cleveragents/cli/commands/resource.py` ~line 1290: checks `ResourceEdgeModel` only - `src/cleveragents/application/services/_resource_registry_dag.py` lines 104, 138, 173, 210, 266: uses `ResourceLinkModel` for all DAG operations - `src/cleveragents/infrastructure/database/models.py`: defines both `ResourceEdgeModel` (table: `resource_edges`) and `ResourceLinkModel` (table: `resource_links`) as separate models ## Metadata - **Branch**: `fix/resource-remove-check-resource-links` - **Commit Message**: `fix(cli): check ResourceLinkModel in resource remove to prevent dangling DAG links` - **Milestone**: v3.7.0 - **Parent Epic**: #398 ## Subtasks - [ ] Audit `resource_remove` in `src/cleveragents/cli/commands/resource.py` (~line 1290) to understand the current edge-check logic using `ResourceEdgeModel` - [ ] Add a pre-deletion guard that queries `ResourceLinkModel` for any rows where `parent_id` OR `child_id` matches the resource being removed - [ ] Ensure the combined check (both `ResourceEdgeModel` and `ResourceLinkModel`) raises a clear, user-facing error message listing the conflicting links if any are found - [ ] Write Behave unit tests (in `features/`) covering: removal blocked when `resource_links` row exists as parent, removal blocked when `resource_links` row exists as child, removal succeeds when neither table has references - [ ] Write Robot Framework integration tests (in `robot/`) reproducing the exact steps-to-reproduce scenario end-to-end - [ ] Run `nox -e typecheck` and confirm no Pyright errors introduced - [ ] Run `nox -e lint` and confirm no linting violations - [ ] Run `nox -e unit_tests` and confirm all Behave scenarios pass - [ ] Run `nox -e integration_tests` and confirm Robot Framework tests pass - [ ] Run `nox -e coverage_report` and confirm coverage remains ≥ 97% ## Definition of Done - [ ] All subtasks above are checked off - [ ] `agents resource remove` rejects deletion of any resource that has active entries in either `resource_edges` OR `resource_links` tables, with a descriptive error message - [ ] No dangling rows are left in `resource_links` after any `resource remove` operation - [ ] Commit created with exact message: `fix(cli): check ResourceLinkModel in resource remove to prevent dangling DAG links` with footer `ISSUES CLOSED: #<this issue number>` - [ ] Commit pushed to branch `fix/resource-remove-check-resource-links` - [ ] Pull Request opened, linked to this issue, and merged - [ ] All nox stages pass - [ ] Coverage >= 97% --- **Automated by CleverAgents Bot** Supervisor: UAT Testing | Agent: ca-uat-tester
freemo added this to the v3.7.0 milestone 2026-04-04 20:46:25 +00:00
freemo commented 2026-04-05 06:32:32 +00:00
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Starting implementation on branch fix/resource-remove-check-resource-links.

Analysis:

  • resource_remove in src/cleveragents/cli/commands/resource.py (~line 1295) only checks ResourceEdgeModel (resource_edges table) before allowing deletion
  • link_child/unlink_child operations in _resource_registry_dag.py store DAG relationships in ResourceLinkModel (resource_links table)
  • Fix: add a second query against ResourceLinkModel and combine both counts before rejecting deletion

Plan:

  1. Add ResourceLinkModel import to resource_remove
  2. Query ResourceLinkModel for parent_id OR child_id matches
  3. Combine edge_count + link_count; reject if either > 0 with descriptive error
  4. Write Behave BDD tests for the new scenarios
  5. Write Robot Framework integration test reproducing the exact steps-to-reproduce
  6. Run all quality gates

Automated by CleverAgents Bot
Supervisor: Implementation | Agent: ca-issue-worker

Starting implementation on branch `fix/resource-remove-check-resource-links`. **Analysis:** - `resource_remove` in `src/cleveragents/cli/commands/resource.py` (~line 1295) only checks `ResourceEdgeModel` (resource_edges table) before allowing deletion - `link_child`/`unlink_child` operations in `_resource_registry_dag.py` store DAG relationships in `ResourceLinkModel` (resource_links table) - Fix: add a second query against `ResourceLinkModel` and combine both counts before rejecting deletion **Plan:** 1. Add `ResourceLinkModel` import to `resource_remove` 2. Query `ResourceLinkModel` for parent_id OR child_id matches 3. Combine edge_count + link_count; reject if either > 0 with descriptive error 4. Write Behave BDD tests for the new scenarios 5. Write Robot Framework integration test reproducing the exact steps-to-reproduce 6. Run all quality gates --- **Automated by CleverAgents Bot** Supervisor: Implementation | Agent: ca-issue-worker
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auto-time/update-2026-04-17
docs/auto-docs-8-a2a-rename-documentation
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bugfix/m4-plan-diff-correction-stub
pr-9247
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fix/quality-gates-click82-compat
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fix/issue-6441-session-create-json-output
fix/issue-6331-invariant-add-scope
timeline/day-106-2026-04-16-auto-time-1-v2
spec/auto-arch-23-minor-clarifications
timeline/day-106-2026-04-16-auto-time-2
docs/auto-docs-2-v380-v390
timeline/day-104-2026-04-14-auto-time-1
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auto-docs/changelog-architecture-readme
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chore/timeline-day-105-2026-04-15
docs/timeline-update-2026-04-15-auto-time-1
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benchmark-ci
fix/plan-phase-migration-raw-sql-root-plan-id
auto-arch-12/spec-acms-context-tier-hydrator
timeline/day-106-2026-04-15-auto-time-1
feat/invariant-enforcement-strategize
feat/plan-tree-decision-rendering
feat/plan-correct-revert-append-modes
docs/auto-docs-4-fix-conflicts
docs/auto-docs-1-milestone-docs-v3.0.0-v3.1.0
feat/v3.4.0-acms-lifecycle-policy
pr-9220
fix/a2a-facade-optional-param-validation
feat/ci-guard-llm-secrets
pr-9214
feat/v3.3.0-subplan-status-tracking
feat/v3.3.0-merge-conflict-detection
uat/checkpoint-rollback-merge-tests
fix/pr-review-pool-supervisor-prefix-mismatch
feat/v3.3.0-spawn-subplan-step
auto-time-1-day103-cycle1-session6
feat/v3.8.0-agent-card-endpoint
docs/auto-docs-cycle-24-showcase-nav
auto-inf-3-consolidate-behave-fixtures
fix/issue-7663-docs-writer-missing
auto-time-1-day103-cycle2
docs/timeline-day-104-auto-time-1
auto-arch-16/spec-xml-prompt-injection-mitigation
bugfix/m4-invariant-persistence
uat-a2a-facade-tests-v350
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bugfix/7664-automation-tracking-label-requirements
docs/auto-time-1-timeline-update-2026-04-14
docs/auto-docs-1-milestone-v3-updates
fix/issue-6344-plan-execute-rich-output
docs/action-config-schema-api
fix/bug-hunt-supervisor-nonexistent-file-preflight
fix/retry-policy-model-missing-fields
docs/validation-gate-empty-run-guard
auto-arch-15/spec-retry-policy-canonical-fields
docs/lockservice-advisory-locking
docs/changelog-plan-fix-4197
spec/milestone-plan-section
docs/update-changelog-recent-features
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timeline/day-104-2026-04-14-cycle2
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docs/auto-docs-cycle-1-2026-04-12
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docs/developer-setup-guide
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spec/resource-event-types-clarification
auto-docs-4/changelog-and-observability
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spec/three-way-merge-strategy-v3.3.0
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docs/auto-docs-1-milestone-overview
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feat/issue-6361-shell-safety-service-tui
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docs/timeline-day-102-2026-04-12
docs/cycle-2-git-worktree-acms-hydrator
spec/arch-sandbox-cleanup-discovery
docs/timeline-day96-2026-04-08
docs/auto-docs-cycle-11
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spec/arch-acms-tier-hydration
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docs/add-example-repl-and-actor-run
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docs/auto-docs-cycle-2-worktree-acms
spec/architecture-v3.8.0-milestone-plan
docs/api-lsp-acms-reference
improvement/agent-bug-hunt-pool-supervisor-yaml-syntax-fix
spec/project-delete-deleted-at-field
spec/architecture-provider-registry-tui-materializer
spec/document-reconciliation-blocked-error-5942
fix/issue-7482-git-log-injection
spec/devcontainer-auto-discovery-schema
feat/issue-6350-conversation-content-pruning
docs/update-module-guides-2026-04-10
timeline/day-100-2026-04-10-auto-time-cycle1
timeline/day-99-2026-04-09-auto-time-v2
docs/cycle-3-module-guides
timeline/day-99-2026-04-09-auto-time
pr-4226
spec/additional-llm-providers-gemini-groq-cohere-together-ollama-mistral
spec/document-context-tier-hydrator-6175
docs/timeline-day99-2026-04-09
spec/invariant-cli-clarifications
docs/add-example-project-init-and-context-management
spec/reconciliation-blocked-error-documentation
spec/fix-invariant-precedence-reference-5861
spec/fix-plan-correct-accepts-plan-id-5558
spec/fix-validation-attach-synopsis-5328
docs/timeline-day-99-cycle-1
docs/timeline-day-99-cycle-2
fix/actor-context-list-regex-arg
docs/timeline-day-99-cycle-3
spec/arch-security-mode-init
docs/auto-docs-cycle-9-updates
fix-resource-fix-resource-remove-to-check-correct-edge-table
feat/issue-6434-tui-env-var-expansion
fix/issue-6321-plan-prompt-timing-field
fix/issue-6322-resource-add-url-flag
feat/issue-6348-sessions-screen
spec/plan-show-command
temp
feat/harden-label-restrictions-1775753628
spec/invariant-reconciliation-failure-behavior
spec/add-reconciliation-failure-behavior-5942
spec/architecture-corrections-cycle3
spec/checkpoint-trigger-names-and-config-key-fix
spec/fix-ai-provider-interface-5801
spec/azure-api-version-default-update
docs/auto-docs-writer-cycle1-labels
spec/fix-resource-type-yaml-format-5622
spec/add-plan-revert-resume-commands-5574
docs/auto-docs-cycle-1-2026-04-09
spec/plan-correct-plan-id-or-decision-id-5558
spec/fix-subgraph-node-actor-ref-field-5427
issue/5284-master-ci-fix
timeline/day-99-2026-04-09-v2
merge-me
docs/session-3377-initial-docs-update
fix/llm-provider-subpackage-exports
spec/arce-acronym-and-tui-keybinding-fixes
spec/architecture-corrections-cycle2
spec/architecture-corrections-cycle1
docs/cycle-1-updates
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docs/session-4940-2026-04-08-cycle1
spec/architecture-milestone-plan-v3.2-v3.7
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docs/timeline-day98-2026-04-08-v2
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docs/ca-docs-writer-v3.8.1-2026-04-05
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improvement/agent-arch-guard-clone-failure-handling
improvement/agent-test-infra-health-spam-fix-v2
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docs/timeline-day95-final-2026-04-05
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docs/add-lsp-api-and-changelog-2026-04-05
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docs/v3.7.0-documentation-update
docs/ca-docs-writer-2026-04-05-cycle2
fix/invariant-set-merge-action-scope
docs/unreleased-feature-docs
fix/concurrency-cost-tracker-record-usage-race-condition
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docs/update-changelog-mcp-plan-ci-2026-04-05
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docs/timeline-day95-refresh-2026-04-05
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docs/api-domain-providers-changelog-2026-04-05
docs/ca-docs-writer-2026-04-05
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fix/skill-add-include-validation
docs/timeline-day-95-2026-04-05-update3
docs/timeline-day-95-2026-04-05-update2
docs/ci-incident-runbook-2597
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When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

  
Signed-off: Tech Lead
When an epic or legendary is in review it must be signed off by owner, tech lead, and scrum master before being marked as completed.

  
Spike
A ticket for learning a tool or technology that is needed to be able to do future planning and design.

  
State
Completed
 The ticket has been fully implemented, completed, and merged with the source code. This label should only be applied once a ticket is closed.

  
State
Duplicate
 A ticket that represents the same content as an existing ticket.

  
State
In Progress
 A ticket that is actively being developed.

  
State
In Review
 A ticket that has had some code completed to implement but is waiting to pass peer review and is not yet merged in.

  
State
Paused
 This ticket's work started but wasn't finished. It's on hold (likely in a feature branch) and will be resumed later, either due to a blocker or a delay.

  
State
Unverified
 All new tickets start in this state. A developer may set it to show the ticket is unverified. This means we haven't agreed to work on it. It will either move to a verified state or be closed as wontdo.

  
State
Verified
 The issue has been verified by a developer as legitimate. It will be worked on and verified tickets are now considered part of the backlog.

  
State
Wont Do
 This ticket has been decided it wont be done. This may mean the bug has been determined to not be real (cant verify) or the feature is one we have decided we dont want to adopt.

  
Type
Automation
 Any edits or discussion about the AI automated coding system.

  
Type
Bug
 Something that doesnt work as intended.

  
Type
Discussion
 Anytime a ticket represents a discussion about a subject and doesnt fall into one of the other categories.

  
Type
Documentation
 An error or improvement needed in the documentation.

  
Type
Epic
 Any first tier epic. That is, an epic which contains only issues as children and will not have sub-epics.

  
Type
Feature
 Some new functionality not present.

  
Type
Legendary
 A type of Epic which will contain other Epics.

  
Type
Refactor
 A code change that restructures existing code without changing its external behavior.

  
Type
Support
 Someone needs help using the project.

  
Type
Task
 A generic task that doesnt fit into the other type categories.

  
Type
Testing
 Work exclusively focusing on fixing or expanding testing.

No labels
auto/needs-reevaluation
controller-managed
auto/blocked-by-deps
auto/ci-timeout
auto/claimed-implementer
auto/claimed-merge
auto/claimed-reviewer
auto/driver-down
auto/invariant-violation
auto/last-attempt-tier-0
auto/last-attempt-tier-1
auto/last-attempt-tier-2
auto/last-attempt-tier-min
Automation Tracking
auto/needs-conflict-resolution
auto/needs-implementer
auto/postmortem
auto/ready-to-merge
auto/restart-throttled
auto/revert
auto/sentinel
auto/stale-inactivity
auto/unstable
Blocked
Bounty
$100
Bounty
$1000
Bounty
$10000
Bounty
$20
Bounty
$2000
Bounty
$250
Bounty
$50
Bounty
$500
Bounty
$5000
Bounty
$750
MoSCoW
Could have
MoSCoW
Must have
MoSCoW
Should have
Needs Feedback
Points
1
Points
13
Points
2
Points
21
Points
3
Points
34
Points
5
Points
55
Points
8
Points
88
Priority
Backlog
Priority
CI Blocker
Priority
Critical
Priority
High
Priority
Low
Priority
Medium
Signed-off: Owner
Signed-off: Scrum Master
Signed-off: Tech Lead
Spike
State
Completed
State
Duplicate
State
In Progress
State
In Review
State
Paused
State
Unverified
State
Verified
State
Wont Do
Type
Automation
Type
Bug
Type
Discussion
Type
Documentation
Type
Epic
Type
Feature
Type
Legendary
Type
Refactor
Type
Support
Type
Task
Type
Testing
Milestone
Clear milestone
No items
No milestone
v3.7.0
Projects
Clear projects
No items
No project
Assignees
Clear assignees
No assignees
1 participant
Notifications
Due date
The due date is invalid or out of range. Please use the format "yyyy-mm-dd".

No due date set.

Blocks
#398 Epic: Post-MVP Resources
cleveragents/cleveragents-core
Reference
cleveragents/cleveragents-core#2837
No description provided.