# Resource DAG

Resources in CleverAgents form a **directed acyclic graph** (DAG) where
parent resources contain or reference child resources.  This document
describes the linking rules, cycle detection, type compatibility
enforcement, and auto-discovery behaviour.

## DAG Rules

| Rule | Description |
|------|-------------|
| **No self-loops** | A resource cannot be its own child. |
| **No cycles** | If resource A is an ancestor of B, then B cannot become a parent of A. |
| **Type compatibility** | The child's resource type must appear in the parent type's `child_types` list. |
| **Unique links** | A given (parent, child) pair can only be linked once. |
| **Both must exist** | Both the parent and the child resource must be registered before linking. |

## API

### `link_child(parent_id, child_id)`

Links a child resource to a parent in the DAG.

1. Validates that both resources exist in the registry.
2. Checks **type compatibility** — the child resource's type must be
   listed in the parent resource type's `child_types` field.
3. Performs **cycle detection** — walks the ancestor chain of the
   parent to ensure the child is not already an ancestor.
4. Persists the link in the `resource_links` table.

**Errors:**

- `ResourceNotFoundRepoError` — parent or child does not exist.
- `TypeIncompatibleError` — child type not in parent's `child_types`.
- `CycleDetectedError` — linking would create a cycle.
- `DuplicateResourceLinkError` — link already exists.

### `unlink_child(parent_id, child_id)`

Removes a parent-child link from the DAG.

1. Validates that both resources exist.
2. Validates the link exists.
3. Deletes the link from `resource_links`.

**Errors:**

- `ResourceNotFoundRepoError` — parent or child does not exist.
- `LinkNotFoundError` — the link does not exist.

### `get_children(resource_id)`

Returns all direct children of a resource (via `resource_links`).

### `get_parents(resource_id)`

Returns all direct parents of a resource (via `resource_links`).

## Cycle Detection

Cycle detection uses a **breadth-first search** upward through the
`resource_links` table starting from the proposed parent.  If the
proposed child is found among the ancestors, the link is rejected
with a `CycleDetectedError` that includes the cycle path.

### Example

```
A -> B -> C
```

Attempting to link `C -> A` would be rejected because `A` is an
ancestor of `C`.  The error message includes the path:
`A -> B -> C -> A`.

## Type Compatibility

Each resource type defines a `child_types` list of allowed child
type names.  When linking, the system verifies:

```
child.resource_type_name in parent_type.child_types
```

If the parent type's `child_types` list is empty, **any** child type
is allowed (no restriction).

### Example

```yaml
# git-checkout type
child_types: ["fs-directory", "git"]
```

Only resources of type `fs-directory` or `git` can be linked as
children of a `git-checkout` resource.

## Auto-Discovery

### `auto_discover_children(resource_id)`

Materializes child resources based on the parent's type auto-discovery
configuration.

1. Looks up the resource and its type.
2. Reads the `auto_discovery` configuration from the type.
3. For each discovery rule where `enabled` is `true`:
   - Checks the child type exists in the database.
   - Checks type compatibility with the parent.
   - Creates a new child resource with `auto_discovered = true`.
   - Links the child to the parent via `resource_links`.
4. Returns the list of newly created child resources.

### Auto-Discovery Configuration

Auto-discovery is configured per resource type in YAML:

```yaml
auto_discovery:
  enabled: true
  rules:
    - type: fs-directory
      pattern: "*/"
    - type: fs-file
      pattern: "*"
```

Each rule specifies:

- `type` — the child resource type name to create.
- `pattern` — a glob pattern (used by handlers for actual file
  discovery; the repository layer creates placeholder entries).

### When Does Auto-Discovery Run?

Auto-discovery is triggered by calling
`auto_discover_children(resource_id)`.  This is typically invoked:

- When a resource is first registered.
- When a resource's contents change (e.g., new files appear).
- On demand via CLI commands.

## Database Schema

### `resource_links` Table

| Column | Type | Description |
|--------|------|-------------|
| `parent_id` | `String(26)` | FK to `resources.resource_id` |
| `child_id` | `String(26)` | FK to `resources.resource_id` |
| `created_at` | `String(30)` | ISO-8601 timestamp |

Primary key: `(parent_id, child_id)`

Constraints:
- `parent_id != child_id` (no self-loops)
- Foreign keys cascade on delete

### `resource_edges` Table (Extended)

| Column | Type | Description |
|--------|------|-------------|
| `parent_id` | `String(26)` | FK to `resources.resource_id` |
| `child_id` | `String(26)` | FK to `resources.resource_id` |
| `link_type` | `String(20)` | `contains`, `references`, or physical-to-virtual |
| `auto_discovered` | `Boolean` | Whether the link was auto-discovered |
| `coherence` | `String(20)` | `transparent`, `cached`, `independent`, or `NULL` (only set on physical-to-virtual edges) |
| `created_at` | `String(30)` | ISO-8601 timestamp |

## Operational Semantics

Beyond structural rules, the DAG supports runtime operations.
For full details, see [ADR-036](../adr/ADR-036-resource-dag-operational-semantics.md),
[ADR-037](../adr/ADR-037-tool-reachability-and-access-projection.md), and
[ADR-038](../adr/ADR-038-cross-mechanism-sandbox-coordination.md).

### Sandbox Boundary Algebra

- **`sandbox_boundary(r)`**: Nearest sandboxable ancestor of `r` along `contains` edges.
- **Sandbox domain**: All resources sharing the same sandbox boundary share one sandbox instance.
- Resources below a boundary (e.g., files within a git-checkout) cannot be sandboxed independently.

### Tool Reachability

- **Forward**: Tool bound to `R` can reach `R` and all `contains` descendants.
- **Inverse**: Resource `r` is reachable by tools bound to any of `r`'s containment ancestors.
- **Cross-equivalence**: Tools reaching one physical manifestation of a virtual resource also logically reach all equivalent manifestations.

### Access Projection

Each resource type handler implements `project_access()` to compute how
a tool bound to an ancestor reaches a descendant resource (access path,
protocol, sandbox-crossing awareness, read richness score).

### Read/Write Routing

Virtual resources with multiple physical manifestations route:
- **Reads** through the richest available source (LSP > filesystem > raw).
- **Writes** through the canonical write target (strongest sandbox domain).

### Cross-Mechanism Coordination

- **Coherence**: `transparent` (shared storage), `cached` (needs refresh), `independent` (needs sync).
- **Write-then-sync**: Changes propagate at commit time, not during execution.
- **Conflict detection**: Multiple dirty manifestations of the same virtual resource at commit time trigger resolution (canonical-wins, merge, fail, or last-writer-wins).
